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The map label for this gene is ifcA [H]

Identifier: 160877427

GI number: 160877427

Start: 5108192

End: 5109940

Strand: Reverse

Name: ifcA [H]

Synonym: Sbal195_4325

Alternate gene names: 160877427

Gene position: 5109940-5108192 (Counterclockwise)

Preceding gene: 160877428

Following gene: 160877426

Centisome position: 95.56

GC content: 42.31

Gene sequence:

>1749_bases
ATGCATTATAAAAAATCCATGATAGGTCTTACTGTAACTGCGATAGCTATTATTGCTGGCTGCCAAGTTACGCATCAAAT
AATAAAAAGCCAAGGTACTGCTCAAGGTAAGCATGGCGAAGTGCAGGTCGAAACAACATTCAAAGACGGGCATATTGTTG
CGATTGATGTACTTAAGCAAAAGGAAAATAAAGTCCTTGCAGGTGCCGTATTTAAAGATGTGAAACAGGCAATTATTGAT
AACAACTCTATCGAGGTTGATGGTATCACTGGTGCAACAGTGACGTCTAAAGCGCTAAAAGAAGCCGTGGGCAAGAGTAT
TGAAGCCGCAGGGGTAACACTAGTTGCTGTCGCTTCTGCTAAAAAAAGTGAAGCATTAACTCCTGCAGAATATACCTATG
ATGTCGTGGTCATTGGCTCTGGTGGTGCAGGCTTTAGTGCAGGCTTAGAAGCAATGGCCGCAGGCCGAACTGCCGTTATT
ATTGAAAAAATGCCAATTATTGGTGGTAACTCATTGATCTCGGGTGCTGAGATGAATGTTGCTGGTAGTTGGGTACAGAA
AAATATGGGTGTGACTGATAGCAAAGACCTGTTTATTAGCGATACGTTAAAAGGTGGCGATTTTAAAGGTGATCCTGAAA
TGGTTAAGACCATGGTCGATAATGCTGTAGGGGCTGCAGAGTGGTTAAGGGATTACGTCAAAGTAGAATTTTATCCCGAT
CAGTTATTTCAGTTTGGTGGACATAGCGTTAAACGGGCCTTAATCCCTAAAGGTCACACTGGCGCTGAGGTGATTAGTAA
GTTTTCTATTAAAGCTGAAGAAGTGGGCTTACCGATCCATACTAATACTAAGGCTGAAAAGTTAATCCAAGATCAAACGG
GTCGAATTGTTGGTGTAGAAGCGACTCATAATGGAAAAACGATTACATACCATGCTAAACGCGGTGTTGTGATTGCTACG
GGTGGATTCTCATCTAACATGAAAATGCGCAAAAAATACAATCCAGAGTTAGATGAACGTTATGGTAGCACTGGTCATTC
AGGTGGTACTGGTGACGGTATTGTGATGGCAGAAAAAATACATGCAGCAGCTAAAAATATGGGATATATCCAGTCATATC
CTATTTGTAGCCCAACCTCTGGTGCTATTGCCTTGATTGCAGACTCTCGCTTCTTTGGTGCAGTGTTAATCAACCAGAAG
GGCGAGCGCTTTGTTGAGGAATTAGAGCGCCGCGATGTTATCTCACAAGCCATTTTAGCCCAACCTGGCCGTTATACTTA
TGTGTTATGGAACCAAGCTATTGAAGATGTTGCCCATACCGTTGCTATGCACCAAGGAGAGCTAAAAGAGTTCACTAAAG
ATGGCCTGATGCATAAAGTTGATACATTGGAAGAAGCGGCGAAGGTTTTCGATATTCCAGTGGAAAAACTAGCATCGACT
ATCAAAGATGTTAATCATTATGCTGCTATTGGTAAGGATGAGGCTTTTAATCATCGCTCAGGATTGGTTGATTTAAGTAA
AGGACCTTATTGGATTTTAAAGGCTACACCTTCTGTGCACCATACAATGGGTGGACTCGTGGTTGATACTCATACTCGTG
TATTGGATGAGCAAGGAAATGCTATTCCCGGCTTATTTGCCGCAGGTGAAGTGACAGGCTTAACACATGGTACTAATCGT
CTTGGTGGCAATGCCTACACTGATATTATTGTTTTTGGTCGTATAGCAGGACAAGAAGCGGCTAAATAA

Upstream 100 bases:

>100_bases
AATCTGAGGGTCTGATGTTTTTCAAATATACGGCCTCATCTCTATTAGTGATCATTTCAAATATTCAATCTCTTTATAAA
AGTTGATAAGGGAAGCAATA

Downstream 100 bases:

>100_bases
GTAGTGTTTTATGCCTAGCTTAAGCGACCTAATTGGGTCGCTTTTGTTTGTAAAGAATGCTTGTTTATTCGTGCATAATA
CGGTGTTTATAGTCTTATTT

Product: flavocytochrome c

Products: NA

Alternate protein names: Fe(3+)-induced flavocytochrome C3; Ifc3; Iron(III)-induced flavocytochrome C3 [H]

Number of amino acids: Translated: 582; Mature: 582

Protein sequence:

>582_residues
MHYKKSMIGLTVTAIAIIAGCQVTHQIIKSQGTAQGKHGEVQVETTFKDGHIVAIDVLKQKENKVLAGAVFKDVKQAIID
NNSIEVDGITGATVTSKALKEAVGKSIEAAGVTLVAVASAKKSEALTPAEYTYDVVVIGSGGAGFSAGLEAMAAGRTAVI
IEKMPIIGGNSLISGAEMNVAGSWVQKNMGVTDSKDLFISDTLKGGDFKGDPEMVKTMVDNAVGAAEWLRDYVKVEFYPD
QLFQFGGHSVKRALIPKGHTGAEVISKFSIKAEEVGLPIHTNTKAEKLIQDQTGRIVGVEATHNGKTITYHAKRGVVIAT
GGFSSNMKMRKKYNPELDERYGSTGHSGGTGDGIVMAEKIHAAAKNMGYIQSYPICSPTSGAIALIADSRFFGAVLINQK
GERFVEELERRDVISQAILAQPGRYTYVLWNQAIEDVAHTVAMHQGELKEFTKDGLMHKVDTLEEAAKVFDIPVEKLAST
IKDVNHYAAIGKDEAFNHRSGLVDLSKGPYWILKATPSVHHTMGGLVVDTHTRVLDEQGNAIPGLFAAGEVTGLTHGTNR
LGGNAYTDIIVFGRIAGQEAAK

Sequences:

>Translated_582_residues
MHYKKSMIGLTVTAIAIIAGCQVTHQIIKSQGTAQGKHGEVQVETTFKDGHIVAIDVLKQKENKVLAGAVFKDVKQAIID
NNSIEVDGITGATVTSKALKEAVGKSIEAAGVTLVAVASAKKSEALTPAEYTYDVVVIGSGGAGFSAGLEAMAAGRTAVI
IEKMPIIGGNSLISGAEMNVAGSWVQKNMGVTDSKDLFISDTLKGGDFKGDPEMVKTMVDNAVGAAEWLRDYVKVEFYPD
QLFQFGGHSVKRALIPKGHTGAEVISKFSIKAEEVGLPIHTNTKAEKLIQDQTGRIVGVEATHNGKTITYHAKRGVVIAT
GGFSSNMKMRKKYNPELDERYGSTGHSGGTGDGIVMAEKIHAAAKNMGYIQSYPICSPTSGAIALIADSRFFGAVLINQK
GERFVEELERRDVISQAILAQPGRYTYVLWNQAIEDVAHTVAMHQGELKEFTKDGLMHKVDTLEEAAKVFDIPVEKLAST
IKDVNHYAAIGKDEAFNHRSGLVDLSKGPYWILKATPSVHHTMGGLVVDTHTRVLDEQGNAIPGLFAAGEVTGLTHGTNR
LGGNAYTDIIVFGRIAGQEAAK
>Mature_582_residues
MHYKKSMIGLTVTAIAIIAGCQVTHQIIKSQGTAQGKHGEVQVETTFKDGHIVAIDVLKQKENKVLAGAVFKDVKQAIID
NNSIEVDGITGATVTSKALKEAVGKSIEAAGVTLVAVASAKKSEALTPAEYTYDVVVIGSGGAGFSAGLEAMAAGRTAVI
IEKMPIIGGNSLISGAEMNVAGSWVQKNMGVTDSKDLFISDTLKGGDFKGDPEMVKTMVDNAVGAAEWLRDYVKVEFYPD
QLFQFGGHSVKRALIPKGHTGAEVISKFSIKAEEVGLPIHTNTKAEKLIQDQTGRIVGVEATHNGKTITYHAKRGVVIAT
GGFSSNMKMRKKYNPELDERYGSTGHSGGTGDGIVMAEKIHAAAKNMGYIQSYPICSPTSGAIALIADSRFFGAVLINQK
GERFVEELERRDVISQAILAQPGRYTYVLWNQAIEDVAHTVAMHQGELKEFTKDGLMHKVDTLEEAAKVFDIPVEKLAST
IKDVNHYAAIGKDEAFNHRSGLVDLSKGPYWILKATPSVHHTMGGLVVDTHTRVLDEQGNAIPGLFAAGEVTGLTHGTNR
LGGNAYTDIIVFGRIAGQEAAK

Specific function: Catalyzes unidirectional fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown [H]

COG id: COG1053

COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

Organism=Homo sapiens, GI156416003, Length=408, Percent_Identity=25.9803921568627, Blast_Score=95, Evalue=2e-19,
Organism=Escherichia coli, GI1788928, Length=486, Percent_Identity=27.5720164609054, Blast_Score=105, Evalue=8e-24,
Organism=Escherichia coli, GI1786942, Length=477, Percent_Identity=26.2054507337526, Blast_Score=87, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI71986328, Length=475, Percent_Identity=32.2105263157895, Blast_Score=184, Evalue=1e-46,
Organism=Caenorhabditis elegans, GI17505833, Length=409, Percent_Identity=26.6503667481663, Blast_Score=92, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17550100, Length=408, Percent_Identity=25.7352941176471, Blast_Score=84, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6320788, Length=481, Percent_Identity=30.7692307692308, Blast_Score=161, Evalue=2e-40,
Organism=Saccharomyces cerevisiae, GI6322511, Length=481, Percent_Identity=27.6507276507277, Blast_Score=158, Evalue=2e-39,
Organism=Saccharomyces cerevisiae, GI6322416, Length=489, Percent_Identity=27.8118609406953, Blast_Score=90, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6322701, Length=481, Percent_Identity=27.027027027027, Blast_Score=86, Evalue=1e-17,
Organism=Drosophila melanogaster, GI17137288, Length=490, Percent_Identity=27.5510204081633, Blast_Score=93, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24655642, Length=490, Percent_Identity=27.5510204081633, Blast_Score=93, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24655647, Length=490, Percent_Identity=27.5510204081633, Blast_Score=93, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003953
- InterPro:   IPR013027
- InterPro:   IPR010960
- InterPro:   IPR011031 [H]

Pfam domain/function: PF00890 FAD_binding_2 [H]

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 62129; Mature: 62129

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHYKKSMIGLTVTAIAIIAGCQVTHQIIKSQGTAQGKHGEVQVETTFKDGHIVAIDVLKQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCEEEEEEECC
KENKVLAGAVFKDVKQAIIDNNSIEVDGITGATVTSKALKEAVGKSIEAAGVTLVAVASA
CCCCEEHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCHHCCEEEEEEECC
KKSEALTPAEYTYDVVVIGSGGAGFSAGLEAMAAGRTAVIIEKMPIIGGNSLISGAEMNV
CCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCEECCCCCCC
AGSWVQKNMGVTDSKDLFISDTLKGGDFKGDPEMVKTMVDNAVGAAEWLRDYVKVEFYPD
CHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHEEEEEHH
QLFQFGGHSVKRALIPKGHTGAEVISKFSIKAEEVGLPIHTNTKAEKLIQDQTGRIVGVE
HHHHHCCCHHHHHCCCCCCCHHHHHHHHCCCHHHCCCCEECCCHHHHHHHHCCCCEEEEE
ATHNGKTITYHAKRGVVIATGGFSSNMKMRKKYNPELDERYGSTGHSGGTGDGIVMAEKI
EECCCCEEEEEECCCEEEEECCCCCCCHHHHCCCCCHHHHCCCCCCCCCCCCCEEEHHHH
HAAAKNMGYIQSYPICSPTSGAIALIADSRFFGAVLINQKGERFVEELERRDVISQAILA
HHHHHCCCCEECCCCCCCCCCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHC
QPGRYTYVLWNQAIEDVAHTVAMHQGELKEFTKDGLMHKVDTLEEAAKVFDIPVEKLAST
CCCCEEEEEHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHH
IKDVNHYAAIGKDEAFNHRSGLVDLSKGPYWILKATPSVHHTMGGLVVDTHTRVLDEQGN
HHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCHHHHCCCEEEECHHHHHHCCCC
AIPGLFAAGEVTGLTHGTNRLGGNAYTDIIVFGRIAGQEAAK
CCCCEEECCCEEECCCCCCCCCCCCEEEEEEEEEECCCCCCC
>Mature Secondary Structure
MHYKKSMIGLTVTAIAIIAGCQVTHQIIKSQGTAQGKHGEVQVETTFKDGHIVAIDVLKQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCEEEEEEECC
KENKVLAGAVFKDVKQAIIDNNSIEVDGITGATVTSKALKEAVGKSIEAAGVTLVAVASA
CCCCEEHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCHHCCEEEEEEECC
KKSEALTPAEYTYDVVVIGSGGAGFSAGLEAMAAGRTAVIIEKMPIIGGNSLISGAEMNV
CCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCEECCCCCCC
AGSWVQKNMGVTDSKDLFISDTLKGGDFKGDPEMVKTMVDNAVGAAEWLRDYVKVEFYPD
CHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHEEEEEHH
QLFQFGGHSVKRALIPKGHTGAEVISKFSIKAEEVGLPIHTNTKAEKLIQDQTGRIVGVE
HHHHHCCCHHHHHCCCCCCCHHHHHHHHCCCHHHCCCCEECCCHHHHHHHHCCCCEEEEE
ATHNGKTITYHAKRGVVIATGGFSSNMKMRKKYNPELDERYGSTGHSGGTGDGIVMAEKI
EECCCCEEEEEECCCEEEEECCCCCCCHHHHCCCCCHHHHCCCCCCCCCCCCCEEEHHHH
HAAAKNMGYIQSYPICSPTSGAIALIADSRFFGAVLINQKGERFVEELERRDVISQAILA
HHHHHCCCCEECCCCCCCCCCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHC
QPGRYTYVLWNQAIEDVAHTVAMHQGELKEFTKDGLMHKVDTLEEAAKVFDIPVEKLAST
CCCCEEEEEHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHH
IKDVNHYAAIGKDEAFNHRSGLVDLSKGPYWILKATPSVHHTMGGLVVDTHTRVLDEQGN
HHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCHHHHCCCEEEECHHHHHHCCCC
AIPGLFAAGEVTGLTHGTNRLGGNAYTDIIVFGRIAGQEAAK
CCCCEEECCCEEECCCCCCCCCCCCEEEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10455032; 10581549 [H]