Click here to switch to the map view.

The map label for this gene is ompC [H]

Identifier: 160877276

GI number: 160877276

Start: 4937743

End: 4938897

Strand: Direct

Name: ompC [H]

Synonym: Sbal195_4173

Alternate gene names: 160877276

Gene position: 4937743-4938897 (Clockwise)

Preceding gene: 160877275

Following gene: 160877278

Centisome position: 92.34

GC content: 49.35

Gene sequence:

>1155_bases
ATGAATAAGACTTGTCTCGCCTTAGCGTTACCTATGCTATTAACGGCCACCAGCAGTCAGGCGGTTGAGCTCTATAAAGA
TCAAAAAAACACATTAGATTTAACCGGTTGGTTGGGGTTTGCCGCCTTGAATGACAGCCACGACACCTCGGTTATCGACG
ATTCATCACGCTTAAGATTTAGCTTCGAGCGCAGTGAGAGAAACGGCTGGACCGCCTTCGCCACCACAGAATGGGGGATC
AATATGGTCTCCAGCGACGATGGCCTAGTGATGCAAGGGGGCAAACTCGCTGCCGAAAAGACCGATGATTTTCTCTATAA
CCGCTTAGGTTATGTCGGCATGTCCCACGATGTCTGGGGGAGTTTGAGCTTTGGTAAACAATGGGGCGCCTATTACGATG
TCGCCGGCACCACAGATTTACCCAACGTTTTCGCAGGCTACAGCGTTGGCGCTTACACCTTTGGCGATGGCGGCCTCACC
GGCACTGGCCGTGCCGACTCCGCCTTTATTTACCGCAATAGTGTCGGCCCCGTGCAAATCGCCTTGCAATATGCCGCCAA
AACCAATGGCGATGTCAGCTTAAAAAATGATGACGGCAGCGAAATGAGTAACTCTGAGCTGAGTTTCGACAGCAGTTACG
GTGCCAGTATCACCTATTCAGCAACCGAAAAATTCAAGCTGCTTGCAGGCTTTAACCGCGGTGATTTTGAAGGCCACTTA
GGCAATACTCAAGTCGACGAAACCAATGAAATCATCGGCATTGGTGCCATGTATGGTGACTACTACCACTATGCCGAAGG
ACGCGAAGCCAGCGGTCTTTATGTGGGTTTTAACGCTCACCAAAGTAAGAGTAATGAACTGGTCAATGGTGATCTCTACG
ACGCCACTGGTGCCGAGTTGATGACGGCCTATCAATTCGACAACGGTTTTGTGCCTATGGTCGTACTCAGTTATTTAGAT
TTAGACACAGATGCAACTACGCCCATCCAAGGTAATTGGACCCGCCAATTTGCCATGCTGGGTCTGCACTATCGCTATAG
CAACGACACTGTGATGTTTGCTGAAATGAAGTTAGATTTCAGTGATATGGATGATACCGCGCTCGAGGCCCAGGAAGACA
ACAGCTTCGCAGTCGGGATTAATTACTTCTTTTAA

Upstream 100 bases:

>100_bases
CGAAAACGATTAATCACACCATCTAAAAGAACGGTTACTCAGGGATCATAGGCCAAGCCTATGATCCCCTGGAGAATACT
TGCTCATTATCGGGGGATTT

Downstream 100 bases:

>100_bases
GGCTCAAGGGAATTTAGCTAAGGTGACTAAAGCGCCCATTCAACTTTAGCATTCCTTGGTCATATATAGCGGGACTATTT
TACATAACAGTGTTCAGTGG

Product: porin

Products: NA

Alternate protein names: Porin ompC [H]

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MNKTCLALALPMLLTATSSQAVELYKDQKNTLDLTGWLGFAALNDSHDTSVIDDSSRLRFSFERSERNGWTAFATTEWGI
NMVSSDDGLVMQGGKLAAEKTDDFLYNRLGYVGMSHDVWGSLSFGKQWGAYYDVAGTTDLPNVFAGYSVGAYTFGDGGLT
GTGRADSAFIYRNSVGPVQIALQYAAKTNGDVSLKNDDGSEMSNSELSFDSSYGASITYSATEKFKLLAGFNRGDFEGHL
GNTQVDETNEIIGIGAMYGDYYHYAEGREASGLYVGFNAHQSKSNELVNGDLYDATGAELMTAYQFDNGFVPMVVLSYLD
LDTDATTPIQGNWTRQFAMLGLHYRYSNDTVMFAEMKLDFSDMDDTALEAQEDNSFAVGINYFF

Sequences:

>Translated_384_residues
MNKTCLALALPMLLTATSSQAVELYKDQKNTLDLTGWLGFAALNDSHDTSVIDDSSRLRFSFERSERNGWTAFATTEWGI
NMVSSDDGLVMQGGKLAAEKTDDFLYNRLGYVGMSHDVWGSLSFGKQWGAYYDVAGTTDLPNVFAGYSVGAYTFGDGGLT
GTGRADSAFIYRNSVGPVQIALQYAAKTNGDVSLKNDDGSEMSNSELSFDSSYGASITYSATEKFKLLAGFNRGDFEGHL
GNTQVDETNEIIGIGAMYGDYYHYAEGREASGLYVGFNAHQSKSNELVNGDLYDATGAELMTAYQFDNGFVPMVVLSYLD
LDTDATTPIQGNWTRQFAMLGLHYRYSNDTVMFAEMKLDFSDMDDTALEAQEDNSFAVGINYFF
>Mature_384_residues
MNKTCLALALPMLLTATSSQAVELYKDQKNTLDLTGWLGFAALNDSHDTSVIDDSSRLRFSFERSERNGWTAFATTEWGI
NMVSSDDGLVMQGGKLAAEKTDDFLYNRLGYVGMSHDVWGSLSFGKQWGAYYDVAGTTDLPNVFAGYSVGAYTFGDGGLT
GTGRADSAFIYRNSVGPVQIALQYAAKTNGDVSLKNDDGSEMSNSELSFDSSYGASITYSATEKFKLLAGFNRGDFEGHL
GNTQVDETNEIIGIGAMYGDYYHYAEGREASGLYVGFNAHQSKSNELVNGDLYDATGAELMTAYQFDNGFVPMVVLSYLD
LDTDATTPIQGNWTRQFAMLGLHYRYSNDTVMFAEMKLDFSDMDDTALEAQEDNSFAVGINYFF

Specific function: Forms passive diffusion pores which allow small molecular weight hydrophilic materials across the outer membrane [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 42084; Mature: 42084

Theoretical pI: Translated: 4.08; Mature: 4.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTCLALALPMLLTATSSQAVELYKDQKNTLDLTGWLGFAALNDSHDTSVIDDSSRLRF
CCCHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEEEEEEEECCCCCCCEECCCCEEEE
SFERSERNGWTAFATTEWGINMVSSDDGLVMQGGKLAAEKTDDFLYNRLGYVGMSHDVWG
EEEECCCCCEEEEEEECCCCEEEECCCCEEEECCEEECCCHHHHHHHHHHHEECCCCCCE
SLSFGKQWGAYYDVAGTTDLPNVFAGYSVGAYTFGDGGLTGTGRADSAFIYRNSVGPVQI
ECCCCCCCCCEEECCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCCCEEEEECCCCCEEE
ALQYAAKTNGDVSLKNDDGSEMSNSELSFDSSYGASITYSATEKFKLLAGFNRGDFEGHL
EEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCC
GNTQVDETNEIIGIGAMYGDYYHYAEGREASGLYVGFNAHQSKSNELVNGDLYDATGAEL
CCCCCCCCCCEEEEEEECCCEEEECCCCCCCCEEEEEECCCCCCCCEECCCCCCCCCCCE
MTAYQFDNGFVPMVVLSYLDLDTDATTPIQGNWTRQFAMLGLHYRYSNDTVMFAEMKLDF
EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEECC
SDMDDTALEAQEDNSFAVGINYFF
CCCCCCCEECCCCCCEEEEEEECC
>Mature Secondary Structure
MNKTCLALALPMLLTATSSQAVELYKDQKNTLDLTGWLGFAALNDSHDTSVIDDSSRLRF
CCCHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEEEEEEEECCCCCCCEECCCCEEEE
SFERSERNGWTAFATTEWGINMVSSDDGLVMQGGKLAAEKTDDFLYNRLGYVGMSHDVWG
EEEECCCCCEEEEEEECCCCEEEECCCCEEEECCEEECCCHHHHHHHHHHHEECCCCCCE
SLSFGKQWGAYYDVAGTTDLPNVFAGYSVGAYTFGDGGLTGTGRADSAFIYRNSVGPVQI
ECCCCCCCCCEEECCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCCCEEEEECCCCCEEE
ALQYAAKTNGDVSLKNDDGSEMSNSELSFDSSYGASITYSATEKFKLLAGFNRGDFEGHL
EEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCC
GNTQVDETNEIIGIGAMYGDYYHYAEGREASGLYVGFNAHQSKSNELVNGDLYDATGAEL
CCCCCCCCCCEEEEEEECCCEEEECCCCCCCCEEEEEECCCCCCCCEECCCCCCCCCCCE
MTAYQFDNGFVPMVVLSYLDLDTDATTPIQGNWTRQFAMLGLHYRYSNDTVMFAEMKLDF
EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEECC
SDMDDTALEAQEDNSFAVGINYFF
CCCCCCCEECCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8180703 [H]