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The map label for this gene is yciR [C]

Identifier: 160877131

GI number: 160877131

Start: 4737574

End: 4738557

Strand: Reverse

Name: yciR [C]

Synonym: Sbal195_4027

Alternate gene names: 160877131

Gene position: 4738557-4737574 (Counterclockwise)

Preceding gene: 160877132

Following gene: 160877125

Centisome position: 88.62

GC content: 47.76

Gene sequence:

>984_bases
GTGGCATCGGATACGGCAGCAGAACACATCAAGCAACTTCAGGCTGAAATTGCTCAGCTCAAACGCGAAAACGCCCAGTT
AACGGCGTTGAATCGTCGTGCCGAAGAAAAACTGTTTGCTGCCCTCGATGGCAATGGCTTGTGCCTGTGGGAACAGCATA
TTCCAAGTGGGAATTTAACGATATTCAATATGCGCTGGGGCGAAATGCTCGGTTTTAGTCCTGAAGAATTAGCCGCCCAC
GTTGATATCTGGAAAAGTAAGTTACACCCAGAAGATAAAGCATGGGTGATAAAAGCCTTTGAAGATCATGTCAGTGGTAA
GGCCGATTACTATCAGGCAGTACACAGAATGTTGCATAAAGATGGTAGCGTTACTTGGGTGTCTGACCGTGGCCGTATCG
TTGAGCGTTTTGCCGATGGCACGCCGCTGCGGATGATGGGCAGCCATATCGATATCACCCAAGAAAAACGCTACGAACTG
GATCTGGCACTGTTAGCTCACAGCGATCCCCTCACCAACTTAATGAATCGCCAAGCCATAGCCAAAGCGTTCGATGAGTG
TTTGCAACCCGAGATGCGCGGCGCATTATTCTTTATCGATCTGGATGGTTTTAAAGCCTTAAATGATCGTCACGGCCATA
AGTTTGGCGACAATTTATTGGTGCATGTGGCGCATACATTAGTGTCTCATTCGGGTGAGTTAGCGAAGATCGCTCGGCTA
GGTGGCGATGAGTTTGTGATCATACTGCCGTCCTCGGATATTGAATCTTTAGCTATGCTCGCACAATCCTTGCTCGATGT
TTATCGACAGGGCTTTTTGCTTGAAGGTTGTGACGTGGAGATAGGCCTGAGTATCGGTATCGATATATTTAGCTATGGTG
ATAGTTTTGCCAAAAGCTGCGATCGCGCGGATGCTGCTATGTACCGCGTGAAACACCAAGGTAAAAATGGCTACCGCTTT
TACCAGCAAGCTGATGATTGCTAA

Upstream 100 bases:

>100_bases
AATATGATTTTGACTCATCTTGCACTCCTCGCTATCTTGCTTCGGCATTGAGTGTTTTACACTGAACGAGATTTTCCCGC
TTTAATGAAAGAGATTTTTC

Downstream 100 bases:

>100_bases
CCCTTAACCCGCCCGTCATTTACTCGTTTAGCGAACATCAATAGGCGCGACATTTGCCTGTTCACAACCCCACACCTCAA
CGGCGGCATCTTGCTTGTTC

Product: PAS/PAC sensor-containing diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MASDTAAEHIKQLQAEIAQLKRENAQLTALNRRAEEKLFAALDGNGLCLWEQHIPSGNLTIFNMRWGEMLGFSPEELAAH
VDIWKSKLHPEDKAWVIKAFEDHVSGKADYYQAVHRMLHKDGSVTWVSDRGRIVERFADGTPLRMMGSHIDITQEKRYEL
DLALLAHSDPLTNLMNRQAIAKAFDECLQPEMRGALFFIDLDGFKALNDRHGHKFGDNLLVHVAHTLVSHSGELAKIARL
GGDEFVIILPSSDIESLAMLAQSLLDVYRQGFLLEGCDVEIGLSIGIDIFSYGDSFAKSCDRADAAMYRVKHQGKNGYRF
YQQADDC

Sequences:

>Translated_327_residues
MASDTAAEHIKQLQAEIAQLKRENAQLTALNRRAEEKLFAALDGNGLCLWEQHIPSGNLTIFNMRWGEMLGFSPEELAAH
VDIWKSKLHPEDKAWVIKAFEDHVSGKADYYQAVHRMLHKDGSVTWVSDRGRIVERFADGTPLRMMGSHIDITQEKRYEL
DLALLAHSDPLTNLMNRQAIAKAFDECLQPEMRGALFFIDLDGFKALNDRHGHKFGDNLLVHVAHTLVSHSGELAKIARL
GGDEFVIILPSSDIESLAMLAQSLLDVYRQGFLLEGCDVEIGLSIGIDIFSYGDSFAKSCDRADAAMYRVKHQGKNGYRF
YQQADDC
>Mature_326_residues
ASDTAAEHIKQLQAEIAQLKRENAQLTALNRRAEEKLFAALDGNGLCLWEQHIPSGNLTIFNMRWGEMLGFSPEELAAHV
DIWKSKLHPEDKAWVIKAFEDHVSGKADYYQAVHRMLHKDGSVTWVSDRGRIVERFADGTPLRMMGSHIDITQEKRYELD
LALLAHSDPLTNLMNRQAIAKAFDECLQPEMRGALFFIDLDGFKALNDRHGHKFGDNLLVHVAHTLVSHSGELAKIARLG
GDEFVIILPSSDIESLAMLAQSLLDVYRQGFLLEGCDVEIGLSIGIDIFSYGDSFAKSCDRADAAMYRVKHQGKNGYRFY
QQADDC

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=192, Percent_Identity=30.7291666666667, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788381, Length=200, Percent_Identity=36, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87081881, Length=222, Percent_Identity=31.0810810810811, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788956, Length=150, Percent_Identity=35.3333333333333, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI145693134, Length=160, Percent_Identity=28.125, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787802, Length=162, Percent_Identity=29.6296296296296, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87082007, Length=183, Percent_Identity=32.2404371584699, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081977, Length=175, Percent_Identity=34.2857142857143, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786584, Length=177, Percent_Identity=28.8135593220339, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787816, Length=168, Percent_Identity=27.3809523809524, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI87081921, Length=191, Percent_Identity=23.0366492146597, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787056, Length=153, Percent_Identity=31.3725490196078, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 36745; Mature: 36614

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASDTAAEHIKQLQAEIAQLKRENAQLTALNRRAEEKLFAALDGNGLCLWEQHIPSGNLT
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCEEEECCCCCCCCEE
IFNMRWGEMLGFSPEELAAHVDIWKSKLHPEDKAWVIKAFEDHVSGKADYYQAVHRMLHK
EEEEEHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCHHHHHHHHHHHHC
DGSVTWVSDRGRIVERFADGTPLRMMGSHIDITQEKRYELDLALLAHSDPLTNLMNRQAI
CCCEEEECCCCHHHHHHCCCCCHHHCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHH
AKAFDECLQPEMRGALFFIDLDGFKALNDRHGHKFGDNLLVHVAHTLVSHSGELAKIARL
HHHHHHHCCHHHCCEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHC
GGDEFVIILPSSDIESLAMLAQSLLDVYRQGFLLEGCDVEIGLSIGIDIFSYGDSFAKSC
CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECEEHHHCCCHHHHHH
DRADAAMYRVKHQGKNGYRFYQQADDC
HHHHHHHHHHHHCCCCCCCHHHCCCCC
>Mature Secondary Structure 
ASDTAAEHIKQLQAEIAQLKRENAQLTALNRRAEEKLFAALDGNGLCLWEQHIPSGNLT
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCEEEECCCCCCCCEE
IFNMRWGEMLGFSPEELAAHVDIWKSKLHPEDKAWVIKAFEDHVSGKADYYQAVHRMLHK
EEEEEHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCHHHHHHHHHHHHC
DGSVTWVSDRGRIVERFADGTPLRMMGSHIDITQEKRYELDLALLAHSDPLTNLMNRQAI
CCCEEEECCCCHHHHHHCCCCCHHHCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHH
AKAFDECLQPEMRGALFFIDLDGFKALNDRHGHKFGDNLLVHVAHTLVSHSGELAKIARL
HHHHHHHCCHHHCCEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHC
GGDEFVIILPSSDIESLAMLAQSLLDVYRQGFLLEGCDVEIGLSIGIDIFSYGDSFAKSC
CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECEEHHHCCCHHHHHH
DRADAAMYRVKHQGKNGYRFYQQADDC
HHHHHHHHHHHHCCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]