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The map label for this gene is ccmH [H]

Identifier: 160877108

GI number: 160877108

Start: 4715346

End: 4715780

Strand: Direct

Name: ccmH [H]

Synonym: Sbal195_4004

Alternate gene names: 160877108

Gene position: 4715346-4715780 (Clockwise)

Preceding gene: 160877107

Following gene: 160877109

Centisome position: 88.18

GC content: 43.91

Gene sequence:

>435_bases
ATGAATCCATTTTTTCGCTCACCTTACCTCTGCGCTTTTACCTGGTTGCTCTTTACCACACTATTTTTAGGAGGGACTGC
ATTCCTCGCGGTGGCTCAAGAGCAGCCCATCTCTAGCCCTTCTCATAAACAACAAGCTATGAATATCACTAAAGTGCTGC
GCTGTCCTATGGCAACTAATCTGAGCCTGTTTGAATCACAAGCTCCTATCGCCCATGAGCTTAAAGCTCAGATATTTTTG
ATGTTGGAACAAGGATATAGCCAAGATGAAATCATTCTATTTATGGTAGAGCGCTATGGTGAAAAAATTCGTTATCAACC
CGAACTTAAAGGTTCTACCGTCGCACTTTGGTTTGGCCCATTATTCTTGCTATTACTCGGTGTAGGTCTTTGCCTTGGAC
TCATTAAACGCGGAGCACTGAGCTCCCCTTCCTAA

Upstream 100 bases:

>100_bases
GAACTGTCGCCGCTTGGCCTGCTCGCAGCCTTTGTTATTACCCGAAATCAGAAACTTTAGCTGACCCATCCCATTCATTG
AAAAGGGAGACACTTGCCTA

Downstream 100 bases:

>100_bases
AAATAAGGATTCACCATGAAACGATATTCTCTGCGACTAATTCTGCTGTGCAGTTTTGTCCTGTTAAACAACGCAGTCCA
AGCCCATTCATTGCAGAATA

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MNPFFRSPYLCAFTWLLFTTLFLGGTAFLAVAQEQPISSPSHKQQAMNITKVLRCPMATNLSLFESQAPIAHELKAQIFL
MLEQGYSQDEIILFMVERYGEKIRYQPELKGSTVALWFGPLFLLLLGVGLCLGLIKRGALSSPS

Sequences:

>Translated_144_residues
MNPFFRSPYLCAFTWLLFTTLFLGGTAFLAVAQEQPISSPSHKQQAMNITKVLRCPMATNLSLFESQAPIAHELKAQIFL
MLEQGYSQDEIILFMVERYGEKIRYQPELKGSTVALWFGPLFLLLLGVGLCLGLIKRGALSSPS
>Mature_144_residues
MNPFFRSPYLCAFTWLLFTTLFLGGTAFLAVAQEQPISSPSHKQQAMNITKVLRCPMATNLSLFESQAPIAHELKAQIFL
MLEQGYSQDEIILFMVERYGEKIRYQPELKGSTVALWFGPLFLLLLGVGLCLGLIKRGALSSPS

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1790512, Length=76, Percent_Identity=44.7368421052632, Blast_Score=73, Evalue=9e-15,
Organism=Escherichia coli, GI1788522, Length=107, Percent_Identity=32.7102803738318, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 16104; Mature: 16104

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPFFRSPYLCAFTWLLFTTLFLGGTAFLAVAQEQPISSPSHKQQAMNITKVLRCPMATN
CCCCCCCCHHHHHHHHHHHHHHHCHHHHEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCC
LSLFESQAPIAHELKAQIFLMLEQGYSQDEIILFMVERYGEKIRYQPELKGSTVALWFGP
HHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHH
LFLLLLGVGLCLGLIKRGALSSPS
HHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNPFFRSPYLCAFTWLLFTTLFLGGTAFLAVAQEQPISSPSHKQQAMNITKVLRCPMATN
CCCCCCCCHHHHHHHHHHHHHHHCHHHHEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCC
LSLFESQAPIAHELKAQIFLMLEQGYSQDEIILFMVERYGEKIRYQPELKGSTVALWFGP
HHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHH
LFLLLLGVGLCLGLIKRGALSSPS
HHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA