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The map label for this gene is ccmF [H]

Identifier: 160877107

GI number: 160877107

Start: 4713271

End: 4715346

Strand: Direct

Name: ccmF [H]

Synonym: Sbal195_4003

Alternate gene names: 160877107

Gene position: 4713271-4715346 (Clockwise)

Preceding gene: 160877094

Following gene: 160877108

Centisome position: 88.14

GC content: 44.46

Gene sequence:

>2076_bases
ATGACCACTATGCTTCCAGAAATAGGCCATATATTGCTGATTATCAGCACTGTCATTGCACTATTATCTGCAATGGTACC
TTTAGTGGGAATTTATAGAGATAATGCTTACTTAACAGGCTACAGCCCAGCATTATTTAGAGCATTATTTACCTCGATAT
CCGCAGCACTCCTTTGCTTAATTTATAGTTTTATCAGTGATGATTTTTCTGTTGCCTATGTTGCCAATCATTCCAATAGT
CAATTAGCCCTTGGGTATAAAGTGGCTGCGGTTTGGGGCAGCCACGAAGGTTCAATGCTCTTTTGGGTATTTGCAATCGC
ACTCTGGGGCGCCATTATCAGTTATCGCCTACCAATAACGGATTGCACTCAGGCCAAAGCCAGCAACCAATACCAAGACG
CTGTTTACTTTGCGAGATTGCTGGCGATTTTGTCGCTAGTGATTCTGGGGTTTAACTTATTTTTACTTTTTACTTCGAAT
CCTTTTGCCCGCTTGCTACCCAATATCCCCATAGAAGGACGCGATCTCAACCCAATATTGCAAGACATAGGCCTTATATT
GCACCCACCTATGCTTTTCCTCGGGTATGTCGGACTTACCGTTTGTTTTGCCGCCGCCTTAGCATCGCTGCTCGGCGGCA
AGTTTAATGCTCGTCAAGTTAACCACTTAAAGCCTTGGGTGTTACTCGCATGGATTTTTTTAACGGGCGGAAATGCCTTT
GGATCTTGGTGGGCCTATAACGAATTAGGCTGGGGAGGATGGTGGTTTTGGGATCCAGTAGAAAACGCCTCTTTTATTCC
TTGGCTTGTCGCCACCGCATTAGTCCATTCTATTGTCCTGACTAAACGCACTAATGGCTTTCAAATTACAACTTTGCTGC
TGTGTATATTGGCTTTCTCACTCAGTTTACTCGGCAGTTTTTTAGTGCGTTCCGGCATAGTGCAATCGGTGCATGCCTTT
GCCGCCGACCCGACACGTGGCATGTCAATCCTCTGTTTATTAATACTTTTTATTGGTGCAGCTCTGCTCATTTTCGCACT
TAAAGCCAATAACCTAAGACACTCAGTCCAGCATGCGATTTTCAGTAAAGAAACGCTGTTATTACTCGGTATTGTAATAT
TAGTCGTCGCTGCATTTTCAGTTCTACTCGGTACCTTCTATCCCTTGATCTATGAACTACTCGGTTTAGGTACACTTTCT
GTCGGTGCCCCTTATTTTAATGCGATCTTTGTACCGCTGACCTTCTTACTCGTACTCTTGATGGGTGTAGCCCCTTTAGC
CCATTGGCAAAAAACATCCAAAGCTCAAGTTAAGCCTTTGATCATTCCTGGCACGCTGATTTTAATTTCGGCTTTGTGGA
TAAGCTTGCAGGCAGCTACTGGCAATAGTTTATTTCTGTTACTTGGTACTGCAGCAGCACTTTGGTTACTGGTTTGCTTA
TTATTAACACTGATCGCAGCATTAGGATTGAACAAGCAAACTCATCAACATAAACAGTCAGTTAAAGATGCCGTGAACAT
GGCTAAGCCTACCTCTAAACGACGCTTCATGGCCATGCTGCTCGCTCATTTAGGCGTTGCTGTAACAATAATAGGTGCGA
CGGCCGTCTCTTTCTTTGAACAAGAAGCCCTGCTAAGAATGGGGCCTGGGCAAGGAAAACCTCTGGCAGGTTATGTCTTA
GTTTATGAAAGTACAGAGAATATCGAGACCAAGAGTTTTACTGCCATTCAAGCCAATATCAGTATCCGTGATGCAGCCCA
AGATGAGCTGGTACTAAACTATCTCACCCCACAACGACAAACCTTTAAAAGCAATGCCATGGAAATGTCCCATGCGGGAA
TTGACCACGGCCTATGGCGGGATATTTATGTCTCGATGGGATTGCAACTTAGTGATAACGAATACCTGATCCGTATCAGC
TATAAACCTCTTGCTAGTTGGATCTGGCTTGGGGCACTGCTAATGATGTTAGGCGGAACTGTCGCCGCTTGGCCTGCTCG
CAGCCTTTGTTATTACCCGAAATCAGAAACTTTAGCTGACCCATCCCATTCATTGAAAAGGGAGACACTTGCCTAA

Upstream 100 bases:

>100_bases
TATGAGAAGTACCATTCAATTAATCTCGCCGTTAGCAATTAAAAATTCTCGTTTAACCATTAACTAAAATTTAATTCACA
CTATCCGAATGGAATAAAAT

Downstream 100 bases:

>100_bases
TGAATCCATTTTTTCGCTCACCTTACCTCTGCGCTTTTACCTGGTTGCTCTTTACCACACTATTTTTAGGAGGGACTGCA
TTCCTCGCGGTGGCTCAAGA

Product: cytochrome c nitrate reductase biogenesis protein NrfE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 691; Mature: 690

Protein sequence:

>691_residues
MTTMLPEIGHILLIISTVIALLSAMVPLVGIYRDNAYLTGYSPALFRALFTSISAALLCLIYSFISDDFSVAYVANHSNS
QLALGYKVAAVWGSHEGSMLFWVFAIALWGAIISYRLPITDCTQAKASNQYQDAVYFARLLAILSLVILGFNLFLLFTSN
PFARLLPNIPIEGRDLNPILQDIGLILHPPMLFLGYVGLTVCFAAALASLLGGKFNARQVNHLKPWVLLAWIFLTGGNAF
GSWWAYNELGWGGWWFWDPVENASFIPWLVATALVHSIVLTKRTNGFQITTLLLCILAFSLSLLGSFLVRSGIVQSVHAF
AADPTRGMSILCLLILFIGAALLIFALKANNLRHSVQHAIFSKETLLLLGIVILVVAAFSVLLGTFYPLIYELLGLGTLS
VGAPYFNAIFVPLTFLLVLLMGVAPLAHWQKTSKAQVKPLIIPGTLILISALWISLQAATGNSLFLLLGTAAALWLLVCL
LLTLIAALGLNKQTHQHKQSVKDAVNMAKPTSKRRFMAMLLAHLGVAVTIIGATAVSFFEQEALLRMGPGQGKPLAGYVL
VYESTENIETKSFTAIQANISIRDAAQDELVLNYLTPQRQTFKSNAMEMSHAGIDHGLWRDIYVSMGLQLSDNEYLIRIS
YKPLASWIWLGALLMMLGGTVAAWPARSLCYYPKSETLADPSHSLKRETLA

Sequences:

>Translated_691_residues
MTTMLPEIGHILLIISTVIALLSAMVPLVGIYRDNAYLTGYSPALFRALFTSISAALLCLIYSFISDDFSVAYVANHSNS
QLALGYKVAAVWGSHEGSMLFWVFAIALWGAIISYRLPITDCTQAKASNQYQDAVYFARLLAILSLVILGFNLFLLFTSN
PFARLLPNIPIEGRDLNPILQDIGLILHPPMLFLGYVGLTVCFAAALASLLGGKFNARQVNHLKPWVLLAWIFLTGGNAF
GSWWAYNELGWGGWWFWDPVENASFIPWLVATALVHSIVLTKRTNGFQITTLLLCILAFSLSLLGSFLVRSGIVQSVHAF
AADPTRGMSILCLLILFIGAALLIFALKANNLRHSVQHAIFSKETLLLLGIVILVVAAFSVLLGTFYPLIYELLGLGTLS
VGAPYFNAIFVPLTFLLVLLMGVAPLAHWQKTSKAQVKPLIIPGTLILISALWISLQAATGNSLFLLLGTAAALWLLVCL
LLTLIAALGLNKQTHQHKQSVKDAVNMAKPTSKRRFMAMLLAHLGVAVTIIGATAVSFFEQEALLRMGPGQGKPLAGYVL
VYESTENIETKSFTAIQANISIRDAAQDELVLNYLTPQRQTFKSNAMEMSHAGIDHGLWRDIYVSMGLQLSDNEYLIRIS
YKPLASWIWLGALLMMLGGTVAAWPARSLCYYPKSETLADPSHSLKRETLA
>Mature_690_residues
TTMLPEIGHILLIISTVIALLSAMVPLVGIYRDNAYLTGYSPALFRALFTSISAALLCLIYSFISDDFSVAYVANHSNSQ
LALGYKVAAVWGSHEGSMLFWVFAIALWGAIISYRLPITDCTQAKASNQYQDAVYFARLLAILSLVILGFNLFLLFTSNP
FARLLPNIPIEGRDLNPILQDIGLILHPPMLFLGYVGLTVCFAAALASLLGGKFNARQVNHLKPWVLLAWIFLTGGNAFG
SWWAYNELGWGGWWFWDPVENASFIPWLVATALVHSIVLTKRTNGFQITTLLLCILAFSLSLLGSFLVRSGIVQSVHAFA
ADPTRGMSILCLLILFIGAALLIFALKANNLRHSVQHAIFSKETLLLLGIVILVVAAFSVLLGTFYPLIYELLGLGTLSV
GAPYFNAIFVPLTFLLVLLMGVAPLAHWQKTSKAQVKPLIIPGTLILISALWISLQAATGNSLFLLLGTAAALWLLVCLL
LTLIAALGLNKQTHQHKQSVKDAVNMAKPTSKRRFMAMLLAHLGVAVTIIGATAVSFFEQEALLRMGPGQGKPLAGYVLV
YESTENIETKSFTAIQANISIRDAAQDELVLNYLTPQRQTFKSNAMEMSHAGIDHGLWRDIYVSMGLQLSDNEYLIRISY
KPLASWIWLGALLMMLGGTVAAWPARSLCYYPKSETLADPSHSLKRETLA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=686, Percent_Identity=41.5451895043732, Blast_Score=498, Evalue=1e-142,
Organism=Escherichia coli, GI1790511, Length=392, Percent_Identity=45.4081632653061, Blast_Score=278, Evalue=9e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 75650; Mature: 75519

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTMLPEIGHILLIISTVIALLSAMVPLVGIYRDNAYLTGYSPALFRALFTSISAALLCL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEECCCHHHHHHHHHHHHHHHHHH
IYSFISDDFSVAYVANHSNSQLALGYKVAAVWGSHEGSMLFWVFAIALWGAIISYRLPIT
HHHHHCCCCEEEEEEECCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC
DCTQAKASNQYQDAVYFARLLAILSLVILGFNLFLLFTSNPFARLLPNIPIEGRDLNPIL
CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHCCCCCCCCCCCCHHH
QDIGLILHPPMLFLGYVGLTVCFAAALASLLGGKFNARQVNHLKPWVLLAWIFLTGGNAF
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHCCCCC
GSWWAYNELGWGGWWFWDPVENASFIPWLVATALVHSIVLTKRTNGFQITTLLLCILAFS
CCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHH
LSLLGSFLVRSGIVQSVHAFAADPTRGMSILCLLILFIGAALLIFALKANNLRHSVQHAI
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
FSKETLLLLGIVILVVAAFSVLLGTFYPLIYELLGLGTLSVGAPYFNAIFVPLTFLLVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHH
MGVAPLAHWQKTSKAQVKPLIIPGTLILISALWISLQAATGNSLFLLLGTAAALWLLVCL
HHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHEECCCCCEEHHHHHHHHHHHHHHH
LLTLIAALGLNKQTHQHKQSVKDAVNMAKPTSKRRFMAMLLAHLGVAVTIIGATAVSFFE
HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QEALLRMGPGQGKPLAGYVLVYESTENIETKSFTAIQANISIRDAAQDELVLNYLTPQRQ
HHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCHHHHHHHCCCCHH
TFKSNAMEMSHAGIDHGLWRDIYVSMGLQLSDNEYLIRISYKPLASWIWLGALLMMLGGT
HHHHHHHHHHHCCCCHHHHHHHHHHCCCEECCCCEEEEEECHHHHHHHHHHHHHHHHCCC
VAAWPARSLCYYPKSETLADPSHSLKRETLA
HHCCCCCCEEECCCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure 
TTMLPEIGHILLIISTVIALLSAMVPLVGIYRDNAYLTGYSPALFRALFTSISAALLCL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEECCCHHHHHHHHHHHHHHHHHH
IYSFISDDFSVAYVANHSNSQLALGYKVAAVWGSHEGSMLFWVFAIALWGAIISYRLPIT
HHHHHCCCCEEEEEEECCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC
DCTQAKASNQYQDAVYFARLLAILSLVILGFNLFLLFTSNPFARLLPNIPIEGRDLNPIL
CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHCCCCCCCCCCCCHHH
QDIGLILHPPMLFLGYVGLTVCFAAALASLLGGKFNARQVNHLKPWVLLAWIFLTGGNAF
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHCCCCC
GSWWAYNELGWGGWWFWDPVENASFIPWLVATALVHSIVLTKRTNGFQITTLLLCILAFS
CCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHH
LSLLGSFLVRSGIVQSVHAFAADPTRGMSILCLLILFIGAALLIFALKANNLRHSVQHAI
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
FSKETLLLLGIVILVVAAFSVLLGTFYPLIYELLGLGTLSVGAPYFNAIFVPLTFLLVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHH
MGVAPLAHWQKTSKAQVKPLIIPGTLILISALWISLQAATGNSLFLLLGTAAALWLLVCL
HHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHEECCCCCEEHHHHHHHHHHHHHHH
LLTLIAALGLNKQTHQHKQSVKDAVNMAKPTSKRRFMAMLLAHLGVAVTIIGATAVSFFE
HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QEALLRMGPGQGKPLAGYVLVYESTENIETKSFTAIQANISIRDAAQDELVLNYLTPQRQ
HHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCHHHHHHHCCCCHH
TFKSNAMEMSHAGIDHGLWRDIYVSMGLQLSDNEYLIRISYKPLASWIWLGALLMMLGGT
HHHHHHHHHHHCCCCHHHHHHHHHHCCCEECCCCEEEEEECHHHHHHHHHHHHHHHHCCC
VAAWPARSLCYYPKSETLADPSHSLKRETLA
HHCCCCCCEEECCCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]