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The map label for this gene is yciR [C]

Identifier: 160877050

GI number: 160877050

Start: 4648302

End: 4650035

Strand: Reverse

Name: yciR [C]

Synonym: Sbal195_3946

Alternate gene names: 160877050

Gene position: 4650035-4648302 (Counterclockwise)

Preceding gene: 160877051

Following gene: 160877049

Centisome position: 86.96

GC content: 44.75

Gene sequence:

>1734_bases
ATGGATTTACTACTGATCGATGATGATGAAGTCGATAGAACGGCAATTATCCGAGCACTTAGACAGTCGAAATTGACGTT
TAATGTGATCGAAGCAAATTGTGCATTTGATGGGTTAAATCTTGCCTTAGAACGTCATTTCGACGGCATTCTATTGGATT
ATTTATTGCCCGATGCCAATGGGTTAGAAGTGTTAATTAAGCTCAATGCCATGACGCAAGATCAGACTGTGGTCGTGATG
CTGAGTCGCTATGAAGATGAAAAACTGGCCCAGCGCTGCATTGAATTAGGTGCGCAGGATTTTCTGCTTAAGGATGAGGT
TAACTCGCGGATCTTAACCCGTGCGATTCGCTACGCGAAACAAAGATCTTCAATGGCATTGGCGTTACGCAATAGCCATC
AAAAACTAAAAGAGCTGGCCGAGCACGACTCGCTCACTAAGCTGGTTAATCGCTATGGTTTTGAACTGTGTCTTAATCGA
GCGATTGCAAGGGCGAAACGCTGTCACGATTATTTGGCTGTTATCTTACTAGATCTCGATGATTTCAAAGCGATTAACGA
CACATTAGGCCACCAAACGGGTGATGTGCTGTTACTCAAAGTGGCGGCTCGATTAAGTGAAGTGCTGCGAGATGGTGACA
TTATTGCCCGTTTAGGTGGTGACGAATTTGTCGTACTCGTGACAGATAACGATTATAAATATTTCCCCATGATAGTGGCC
AATCGACTGCTCAAAGTATTTGAGGATGAATTTTGCCTCGGTGATAACGATGTGCTTATCGGTGCCAGTATCGGTGTGGC
TTTTTATAATGAAGCGGCTTCGAACAGTTCTGAGCTGATGAAATGCGCCGATATCGCCATGTATCGTGCTAAAAAGATGG
GCCGAAACCAGATCCAGTTTTATTCCGAAGCCTTAGATAAAGAAGTACGCTACCGCAATCATATCGAATCAAGTTTGCGT
ATGGCCTTAAAAAGAAATGAATTTAAGGTCCATTATCAAGCACAGGTTAATGCGAAAACCCATCAGCTGGTGGGGATGGA
AGCCCTTATCCGATGGCAGCACCCAGTGGATGGTATTATCGCTCCAGATCAATTTTTGCCCATAGCCGAAGAAATTGGAT
TAATGGATGACATTGATGATTGGGTGCTTGAACAAGCCTGCACCCAGGCACAGGTTTGGTTAAGCCAATTACAGCCCCTA
GGCCAAGAATTCACTATCGCGGTTAACCTCTCTGCATCTCAAATCGGAAATGAGAACCTGTTTGATAAAATCGTGCATAC
ACTGACGAAGACAGGCTTGCCTGCTGGAGCATTAGAGCTTGAAATTACAGAAAATTGCCTTATTGAAGATCCCCATGAAC
ATGCCAAAGTGCTCGATAGAATCGCCGGATTAGGGGTGCGTTTTGCCCTCGATGACTTCGGGACGGGTTTTTCGTCATTG
GAACACATCAAACTGTTTCCGATCAGCGTACTGAAAATCGATAAAAGCTTTGTCGCTTCCTACGATAAGGATGAAAAAGA
TACCCGATTGCTCGCCGCTTTACTCAACTTTGCCTATGGGTTTAATGTTATTTCTGTGGCGGAGGGTGTTGAAACGTTTG
AGCAAGCAGAGTTTTGCACTGCTCGCCATTGCACTGTTTTACAAGGGTATTTATTTTCGCGCCCCTTAGATGCCGCGGCG
TTTGAGGCCAAGTATATTCTGCCACTACTAACCCAAACTCAGCTCCCAGTGTGA

Upstream 100 bases:

>100_bases
CATGGTTAAAACTGACATAAAAGACGGTTTTAATAATATTTTTAACATGCTTGAAGGTTACTGGCGAATAGTCGAGCTCC
CATCCGCATAAGGTGAGTAT

Downstream 100 bases:

>100_bases
GAGGTCTCGAACTATTTCAATAGCATAGTGATTTCGTCTGGTGAGGAATATTTTCTTGCTTTACACTGAGCAATAGACAA
ATATCAGCCCCTTTTTCTGT

Product: response regulator receiver modulated diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 577; Mature: 577

Protein sequence:

>577_residues
MDLLLIDDDEVDRTAIIRALRQSKLTFNVIEANCAFDGLNLALERHFDGILLDYLLPDANGLEVLIKLNAMTQDQTVVVM
LSRYEDEKLAQRCIELGAQDFLLKDEVNSRILTRAIRYAKQRSSMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNR
AIARAKRCHDYLAVILLDLDDFKAINDTLGHQTGDVLLLKVAARLSEVLRDGDIIARLGGDEFVVLVTDNDYKYFPMIVA
NRLLKVFEDEFCLGDNDVLIGASIGVAFYNEAASNSSELMKCADIAMYRAKKMGRNQIQFYSEALDKEVRYRNHIESSLR
MALKRNEFKVHYQAQVNAKTHQLVGMEALIRWQHPVDGIIAPDQFLPIAEEIGLMDDIDDWVLEQACTQAQVWLSQLQPL
GQEFTIAVNLSASQIGNENLFDKIVHTLTKTGLPAGALELEITENCLIEDPHEHAKVLDRIAGLGVRFALDDFGTGFSSL
EHIKLFPISVLKIDKSFVASYDKDEKDTRLLAALLNFAYGFNVISVAEGVETFEQAEFCTARHCTVLQGYLFSRPLDAAA
FEAKYILPLLTQTQLPV

Sequences:

>Translated_577_residues
MDLLLIDDDEVDRTAIIRALRQSKLTFNVIEANCAFDGLNLALERHFDGILLDYLLPDANGLEVLIKLNAMTQDQTVVVM
LSRYEDEKLAQRCIELGAQDFLLKDEVNSRILTRAIRYAKQRSSMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNR
AIARAKRCHDYLAVILLDLDDFKAINDTLGHQTGDVLLLKVAARLSEVLRDGDIIARLGGDEFVVLVTDNDYKYFPMIVA
NRLLKVFEDEFCLGDNDVLIGASIGVAFYNEAASNSSELMKCADIAMYRAKKMGRNQIQFYSEALDKEVRYRNHIESSLR
MALKRNEFKVHYQAQVNAKTHQLVGMEALIRWQHPVDGIIAPDQFLPIAEEIGLMDDIDDWVLEQACTQAQVWLSQLQPL
GQEFTIAVNLSASQIGNENLFDKIVHTLTKTGLPAGALELEITENCLIEDPHEHAKVLDRIAGLGVRFALDDFGTGFSSL
EHIKLFPISVLKIDKSFVASYDKDEKDTRLLAALLNFAYGFNVISVAEGVETFEQAEFCTARHCTVLQGYLFSRPLDAAA
FEAKYILPLLTQTQLPV
>Mature_577_residues
MDLLLIDDDEVDRTAIIRALRQSKLTFNVIEANCAFDGLNLALERHFDGILLDYLLPDANGLEVLIKLNAMTQDQTVVVM
LSRYEDEKLAQRCIELGAQDFLLKDEVNSRILTRAIRYAKQRSSMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNR
AIARAKRCHDYLAVILLDLDDFKAINDTLGHQTGDVLLLKVAARLSEVLRDGDIIARLGGDEFVVLVTDNDYKYFPMIVA
NRLLKVFEDEFCLGDNDVLIGASIGVAFYNEAASNSSELMKCADIAMYRAKKMGRNQIQFYSEALDKEVRYRNHIESSLR
MALKRNEFKVHYQAQVNAKTHQLVGMEALIRWQHPVDGIIAPDQFLPIAEEIGLMDDIDDWVLEQACTQAQVWLSQLQPL
GQEFTIAVNLSASQIGNENLFDKIVHTLTKTGLPAGALELEITENCLIEDPHEHAKVLDRIAGLGVRFALDDFGTGFSSL
EHIKLFPISVLKIDKSFVASYDKDEKDTRLLAALLNFAYGFNVISVAEGVETFEQAEFCTARHCTVLQGYLFSRPLDAAA
FEAKYILPLLTQTQLPV

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=436, Percent_Identity=33.7155963302752, Blast_Score=259, Evalue=4e-70,
Organism=Escherichia coli, GI87081921, Length=463, Percent_Identity=33.0453563714903, Blast_Score=245, Evalue=4e-66,
Organism=Escherichia coli, GI226510982, Length=442, Percent_Identity=30.316742081448, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI1786507, Length=250, Percent_Identity=34, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1788502, Length=251, Percent_Identity=34.6613545816733, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI87081980, Length=253, Percent_Identity=32.8063241106719, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI87081845, Length=244, Percent_Identity=35.2459016393443, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1787055, Length=442, Percent_Identity=25.5656108597285, Blast_Score=123, Evalue=4e-29,
Organism=Escherichia coli, GI1790496, Length=243, Percent_Identity=27.5720164609054, Blast_Score=119, Evalue=7e-28,
Organism=Escherichia coli, GI1788381, Length=407, Percent_Identity=26.044226044226, Blast_Score=118, Evalue=8e-28,
Organism=Escherichia coli, GI87081743, Length=243, Percent_Identity=28.8065843621399, Blast_Score=106, Evalue=5e-24,
Organism=Escherichia coli, GI145693134, Length=207, Percent_Identity=32.8502415458937, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1788849, Length=430, Percent_Identity=24.6511627906977, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI87081977, Length=173, Percent_Identity=33.5260115606936, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI1786584, Length=181, Percent_Identity=33.1491712707182, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI87082007, Length=168, Percent_Identity=36.3095238095238, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1787262, Length=209, Percent_Identity=32.0574162679426, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87082096, Length=201, Percent_Identity=29.8507462686567, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI87081881, Length=168, Percent_Identity=34.5238095238095, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788956, Length=166, Percent_Identity=35.5421686746988, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787802, Length=180, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1788085, Length=209, Percent_Identity=30.622009569378, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=32.1212121212121, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1787056, Length=159, Percent_Identity=34.5911949685535, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI87081974, Length=98, Percent_Identity=34.6938775510204, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 64966; Mature: 64966

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLLIDDDEVDRTAIIRALRQSKLTFNVIEANCAFDGLNLALERHFDGILLDYLLPDAN
CEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEEHHCCCCC
GLEVLIKLNAMTQDQTVVVMLSRYEDEKLAQRCIELGAQDFLLKDEVNSRILTRAIRYAK
CCEEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHCCCHHCEEHHHHHHHHHHHHHHHHH
QRSSMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNRAIARAKRCHDYLAVILLDLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCH
DFKAINDTLGHQTGDVLLLKVAARLSEVLRDGDIIARLGGDEFVVLVTDNDYKYFPMIVA
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCEEHHHHHH
NRLLKVFEDEFCLGDNDVLIGASIGVAFYNEAASNSSELMKCADIAMYRAKKMGRNQIQF
HHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHH
YSEALDKEVRYRNHIESSLRMALKRNEFKVHYQAQVNAKTHQLVGMEALIRWQHPVDGII
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCC
APDQFLPIAEEIGLMDDIDDWVLEQACTQAQVWLSQLQPLGQEFTIAVNLSASQIGNENL
CCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHHCCCCHH
FDKIVHTLTKTGLPAGALELEITENCLIEDPHEHAKVLDRIAGLGVRFALDDFGTGFSSL
HHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEHHHHCCCCCCC
EHIKLFPISVLKIDKSFVASYDKDEKDTRLLAALLNFAYGFNVISVAEGVETFEQAEFCT
CCEEEEEEEEEEECHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ARHCTVLQGYLFSRPLDAAAFEAKYILPLLTQTQLPV
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDLLLIDDDEVDRTAIIRALRQSKLTFNVIEANCAFDGLNLALERHFDGILLDYLLPDAN
CEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCEEEEHHCCCCC
GLEVLIKLNAMTQDQTVVVMLSRYEDEKLAQRCIELGAQDFLLKDEVNSRILTRAIRYAK
CCEEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHCCCHHCEEHHHHHHHHHHHHHHHHH
QRSSMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNRAIARAKRCHDYLAVILLDLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCH
DFKAINDTLGHQTGDVLLLKVAARLSEVLRDGDIIARLGGDEFVVLVTDNDYKYFPMIVA
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCEEHHHHHH
NRLLKVFEDEFCLGDNDVLIGASIGVAFYNEAASNSSELMKCADIAMYRAKKMGRNQIQF
HHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHH
YSEALDKEVRYRNHIESSLRMALKRNEFKVHYQAQVNAKTHQLVGMEALIRWQHPVDGII
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCC
APDQFLPIAEEIGLMDDIDDWVLEQACTQAQVWLSQLQPLGQEFTIAVNLSASQIGNENL
CCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHHCCCCHH
FDKIVHTLTKTGLPAGALELEITENCLIEDPHEHAKVLDRIAGLGVRFALDDFGTGFSSL
HHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEHHHHCCCCCCC
EHIKLFPISVLKIDKSFVASYDKDEKDTRLLAALLNFAYGFNVISVAEGVETFEQAEFCT
CCEEEEEEEEEEECHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ARHCTVLQGYLFSRPLDAAAFEAKYILPLLTQTQLPV
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]