Click here to switch to the map view.

The map label for this gene is yadH [H]

Identifier: 160876815

GI number: 160876815

Start: 4379545

End: 4380315

Strand: Reverse

Name: yadH [H]

Synonym: Sbal195_3711

Alternate gene names: 160876815

Gene position: 4380315-4379545 (Counterclockwise)

Preceding gene: 160876816

Following gene: 160876809

Centisome position: 81.92

GC content: 46.82

Gene sequence:

>771_bases
ATGAATCAGCTCTACTTTATCGCCTTTAAAAGCATCTTAAGCAAAGAAATTAATCGGTTTACGCGAATTTGGATCCAGAC
TTTAGTGCCGCCTGCGATTACCATGACCTTGTATTTCTTGATCTTTGGTAACTTAGTCGGCAGCCGAATTGGAGAGATGG
GCGGCGTATCTTATATGGAGTTTATCGCCCCAGGTTTGATCATGATGTCGGTGATCACTAACTCTTACTCGAACGTGGCG
AGCTCATTCTACAGTGCTAAGTTTCAACGCAATTTAGAAGAGCTGATGGTGGCTCCTGTGCCCCATTATGTGTTGATTGC
TGGCTATGTTGGTGGCGGCGTGGCGCGCGGTTTATGTGTCGGCCTAATAGTGACGCTTGTGGCCATGTTCTTCGTCGACA
TTAGCTTGCATCATGCCGGTTTAGTGGTAATGACAGTGTTTTTAACCTCAGTGTTATTCTCACTGGGTGGCTTGATTAAC
GCTGTTTTTGCAAAGAGTTTTGATGATATCAGTATCATCCCGACCTTTGTGCTCACCCCATTAACTTACCTTGGCGGGGT
ATTTTATTCCCTGTCACTCTTGCCCCCTTTCTGGCAAGGCGTGTCGGCACTCAACCCTGTGGTCTATATGATCAACGTGT
TCCGCTATGGCTTTTTAGGCTTCGCCGACATCAGTGTGCCATTGTCCATCGCCATTATGATCGGTTTCTGTGTCGCTCTG
TGGACCTTAGCGTATTACTTAGTCTCGCGCGGAATAGGGTTACGTTCGTAA

Upstream 100 bases:

>100_bases
TAAGTGCGGCCAATATAGAAGTGCTATCTATGCGCAACAAGTCTAATCGCTTAGAAGAACTCTTCGTCGAACTCGTGAAG
AAAACTCAGGGAGTCTCTGC

Downstream 100 bases:

>100_bases
GCATATTTATTGAGAGTGTCCCGTCCTAAGATAGGTTGACAGTTTCTAGGCCAGCTCCAGTAGCTGGCCTTTTCTATTAT
GCACCTGATTGGGTGTTTCC

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MNQLYFIAFKSILSKEINRFTRIWIQTLVPPAITMTLYFLIFGNLVGSRIGEMGGVSYMEFIAPGLIMMSVITNSYSNVA
SSFYSAKFQRNLEELMVAPVPHYVLIAGYVGGGVARGLCVGLIVTLVAMFFVDISLHHAGLVVMTVFLTSVLFSLGGLIN
AVFAKSFDDISIIPTFVLTPLTYLGGVFYSLSLLPPFWQGVSALNPVVYMINVFRYGFLGFADISVPLSIAIMIGFCVAL
WTLAYYLVSRGIGLRS

Sequences:

>Translated_256_residues
MNQLYFIAFKSILSKEINRFTRIWIQTLVPPAITMTLYFLIFGNLVGSRIGEMGGVSYMEFIAPGLIMMSVITNSYSNVA
SSFYSAKFQRNLEELMVAPVPHYVLIAGYVGGGVARGLCVGLIVTLVAMFFVDISLHHAGLVVMTVFLTSVLFSLGGLIN
AVFAKSFDDISIIPTFVLTPLTYLGGVFYSLSLLPPFWQGVSALNPVVYMINVFRYGFLGFADISVPLSIAIMIGFCVAL
WTLAYYLVSRGIGLRS
>Mature_256_residues
MNQLYFIAFKSILSKEINRFTRIWIQTLVPPAITMTLYFLIFGNLVGSRIGEMGGVSYMEFIAPGLIMMSVITNSYSNVA
SSFYSAKFQRNLEELMVAPVPHYVLIAGYVGGGVARGLCVGLIVTLVAMFFVDISLHHAGLVVMTVFLTSVLFSLGGLIN
AVFAKSFDDISIIPTFVLTPLTYLGGVFYSLSLLPPFWQGVSALNPVVYMINVFRYGFLGFADISVPLSIAIMIGFCVAL
WTLAYYLVSRGIGLRS

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=256, Percent_Identity=67.1875, Blast_Score=355, Evalue=1e-99,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 28088; Mature: 28088

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHCCCCCCC
>Mature Secondary Structure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HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]