| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is yfcA [C]
Identifier: 160876093
GI number: 160876093
Start: 3541131
End: 3541889
Strand: Direct
Name: yfcA [C]
Synonym: Sbal195_2983
Alternate gene names: 160876093
Gene position: 3541131-3541889 (Clockwise)
Preceding gene: 160876092
Following gene: 160876094
Centisome position: 66.22
GC content: 51.52
Gene sequence:
>759_bases ATGGACTGGCTTATTATTGCACTCGCTGGCTTTTTAGGCGGCATGCTCAATGCGGTTGCCGGTGGTGGCAGTTTTATTAC CCTTTTGGCGTTAGTGTTTGTCGGGGTTCCACCGATTGCGGCGAACGCAACGGGGACCGCTGCGTTGTTGCCAGGATATA TCGCCAGTGCTTGGCGCTTTAGAAAAGAAATCGAATATCCGGCGAGTCTTAGCCTTAAGCATCTGATCTTGATTGCCCTT ATAGGCGGCAGTATTGGCGCGGGTATTTTGCTGACCACCAGCGAGCAAGTCTTCGCAAAACTCATTCCTTGGCTGATTTT ACTGGCCACCGCGGCCTTTATTGTTGGCCCTTGGTTACTCAAACGAAGAATCGCTGAGCAAGGCGAAAACCCCTCTACGC CAATGTTAAGTCCGATAACGGCACTGATAATGCTGTCGGCCGTGTGTATCTATGGTGGTTATTTTAATGGTGGCTTAGGC ATCATACTGCTCGCGAGCTTTGGGCTGATGGGCCAGACCAATCTGCATGGGATGAACGGTCTTAAAAATCTCATTTCTGC CCTGCTCACCGCCATCGCCGTTGTGGTTTATGCAGCGGGCAATGTTATCGATGGGCAATATCTGTTGCTGCTTGCTGTGA TGGCGATTATCGGCGGCTATGTCGGCGCGGCGCTGGCCTATCGTATTTCACAGCCCTTGCTGCGCGGCTTTATTGTGATT GTCGGTTTGGCAATGGCCTTAGGCTTTTTCATGCGCTGA
Upstream 100 bases:
>100_bases ACTTTCAATATCGAAATCATCCTGTTAGGGTGAGTGCATAATAACAGACACATTTTTAGCGCTCTGTTTAACTCTCTCAT TGCCCAAAGGAGCGGTATCT
Downstream 100 bases:
>100_bases GCTGTTTATGCGTGAAGCAACGTTTTCATTTATTGAGCTTTTAATACGTTCGTCTCTTTTAATACGTCAGTCTTTTAATG CATTAGCCAACACGCAGTTC
Product: hypothetical protein
Products: NA
Alternate protein names: Permease; Conserved Domain Protein; Transmembrane Protein; Conserved Inner Membrane Protein; Inner Membrane Protein; Integral Membrane Transmembrane Protein; Permease-Like Protein
Number of amino acids: Translated: 252; Mature: 252
Protein sequence:
>252_residues MDWLIIALAGFLGGMLNAVAGGGSFITLLALVFVGVPPIAANATGTAALLPGYIASAWRFRKEIEYPASLSLKHLILIAL IGGSIGAGILLTTSEQVFAKLIPWLILLATAAFIVGPWLLKRRIAEQGENPSTPMLSPITALIMLSAVCIYGGYFNGGLG IILLASFGLMGQTNLHGMNGLKNLISALLTAIAVVVYAAGNVIDGQYLLLLAVMAIIGGYVGAALAYRISQPLLRGFIVI VGLAMALGFFMR
Sequences:
>Translated_252_residues MDWLIIALAGFLGGMLNAVAGGGSFITLLALVFVGVPPIAANATGTAALLPGYIASAWRFRKEIEYPASLSLKHLILIAL IGGSIGAGILLTTSEQVFAKLIPWLILLATAAFIVGPWLLKRRIAEQGENPSTPMLSPITALIMLSAVCIYGGYFNGGLG IILLASFGLMGQTNLHGMNGLKNLISALLTAIAVVVYAAGNVIDGQYLLLLAVMAIIGGYVGAALAYRISQPLLRGFIVI VGLAMALGFFMR >Mature_252_residues MDWLIIALAGFLGGMLNAVAGGGSFITLLALVFVGVPPIAANATGTAALLPGYIASAWRFRKEIEYPASLSLKHLILIAL IGGSIGAGILLTTSEQVFAKLIPWLILLATAAFIVGPWLLKRRIAEQGENPSTPMLSPITALIMLSAVCIYGGYFNGGLG IILLASFGLMGQTNLHGMNGLKNLISALLTAIAVVVYAAGNVIDGQYLLLLAVMAIIGGYVGAALAYRISQPLLRGFIVI VGLAMALGFFMR
Specific function: Unknown
COG id: COG0730
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26271; Mature: 26271
Theoretical pI: Translated: 9.79; Mature: 9.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDWLIIALAGFLGGMLNAVAGGGSFITLLALVFVGVPPIAANATGTAALLPGYIASAWRF CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH RKEIEYPASLSLKHLILIALIGGSIGAGILLTTSEQVFAKLIPWLILLATAAFIVGPWLL HHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH KRRIAEQGENPSTPMLSPITALIMLSAVCIYGGYFNGGLGIILLASFGLMGQTNLHGMNG HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHH LKNLISALLTAIAVVVYAAGNVIDGQYLLLLAVMAIIGGYVGAALAYRISQPLLRGFIVI HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGLAMALGFFMR HHHHHHHHHHCC >Mature Secondary Structure MDWLIIALAGFLGGMLNAVAGGGSFITLLALVFVGVPPIAANATGTAALLPGYIASAWRF CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH RKEIEYPASLSLKHLILIALIGGSIGAGILLTTSEQVFAKLIPWLILLATAAFIVGPWLL HHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH KRRIAEQGENPSTPMLSPITALIMLSAVCIYGGYFNGGLGIILLASFGLMGQTNLHGMNG HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHH LKNLISALLTAIAVVVYAAGNVIDGQYLLLLAVMAIIGGYVGAALAYRISQPLLRGFIVI HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGLAMALGFFMR HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA