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The map label for this gene is ywbI [H]

Identifier: 160876068

GI number: 160876068

Start: 3510425

End: 3511306

Strand: Direct

Name: ywbI [H]

Synonym: Sbal195_2958

Alternate gene names: 160876068

Gene position: 3510425-3511306 (Clockwise)

Preceding gene: 160876066

Following gene: 160876073

Centisome position: 65.65

GC content: 48.64

Gene sequence:

>882_bases
ATGGATATCCGCCAACTCAAACATTTAGATGCCCTTGCCAGTACTGGCAGCTTTACCGCCGCAGCCAAGAAACTGAATAT
GGCCCAACCGGCGTTAAGCCAAAGTATCAAGCGCTTAGAAATCGCACTCGGCGTGACTTTGGTCAACCGTACGAGCAACA
AGAATGACAAGCTACTCGCACTCACGGCCGAAGGATTAGTCCTGCATCAACATGCCACTTTGATCCTGAAACAGATTAAG
CAGGCCGAAGCGCAAATCCGTGCCATGGCCAATCTCACCTCGGGGGAAGTCCGCATTGCCGTACCGGGCATGCTGGGATC
TTTCTACCTGCCCTCGCGCTTAATGGCTTTTCGGCATAAATACCCCGAGTTGAAACTGTCACTGTTTGAAGGCGGGACGC
GGGACGCACTGCGTATGTTGCAACAGGAAGAAGTGGATATTGCAATCATTACAGCCCAAGACCTGCAACCCGAATTTGAT
AGTCAGCTATTGATCCGTGAGCAAATGGTGATCGCTATGGGAGCCGAACACCCTTTAGCGGAACATAACGCCGTCAGTCT
CAATGACTTTTTCGACCATGAATTAGTGATGTTCAAGACAGGTTATTTCCACCGCGAGTGGATCTTATCGCAAGCCAAGG
ATCTGGGGAAAAAGCCCAATGTCGCCTTCGAGACTAATTTGATTAACCTTATCAAACAGATTGTTTCCCAAGGATTTGGG
ATCACCAGCGTGCTCGAAATGGCAATCAGCTCAAAAGATGACATTTTAGCGAAACCCTTCGATCCACCAGTATTTTTGAA
CCTGCATATCGCATGGAAAAAACAACGCCCCGTCAGTCAAGCAGACCGTGCCTTTGTCGATTTTTTGATGAGTAATCGCT
AA

Upstream 100 bases:

>100_bases
ATAACATAACAATAATAGATAATATCTATCGCTATCATTGATTTTTGTTATAACCACAACGCACCGACCTTGCCACTATT
CAACAGTATGGGCCCGATTG

Downstream 100 bases:

>100_bases
CCTTAATCGATTAAAACAAAAAGGGCTGATATCAATATCAGCCCTTCTCTTTTTACTATTAAATTACTGTTAAACCTCTC
GATTTAACCCTGAGCGATTA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MDIRQLKHLDALASTGSFTAAAKKLNMAQPALSQSIKRLEIALGVTLVNRTSNKNDKLLALTAEGLVLHQHATLILKQIK
QAEAQIRAMANLTSGEVRIAVPGMLGSFYLPSRLMAFRHKYPELKLSLFEGGTRDALRMLQQEEVDIAIITAQDLQPEFD
SQLLIREQMVIAMGAEHPLAEHNAVSLNDFFDHELVMFKTGYFHREWILSQAKDLGKKPNVAFETNLINLIKQIVSQGFG
ITSVLEMAISSKDDILAKPFDPPVFLNLHIAWKKQRPVSQADRAFVDFLMSNR

Sequences:

>Translated_293_residues
MDIRQLKHLDALASTGSFTAAAKKLNMAQPALSQSIKRLEIALGVTLVNRTSNKNDKLLALTAEGLVLHQHATLILKQIK
QAEAQIRAMANLTSGEVRIAVPGMLGSFYLPSRLMAFRHKYPELKLSLFEGGTRDALRMLQQEEVDIAIITAQDLQPEFD
SQLLIREQMVIAMGAEHPLAEHNAVSLNDFFDHELVMFKTGYFHREWILSQAKDLGKKPNVAFETNLINLIKQIVSQGFG
ITSVLEMAISSKDDILAKPFDPPVFLNLHIAWKKQRPVSQADRAFVDFLMSNR
>Mature_293_residues
MDIRQLKHLDALASTGSFTAAAKKLNMAQPALSQSIKRLEIALGVTLVNRTSNKNDKLLALTAEGLVLHQHATLILKQIK
QAEAQIRAMANLTSGEVRIAVPGMLGSFYLPSRLMAFRHKYPELKLSLFEGGTRDALRMLQQEEVDIAIITAQDLQPEFD
SQLLIREQMVIAMGAEHPLAEHNAVSLNDFFDHELVMFKTGYFHREWILSQAKDLGKKPNVAFETNLINLIKQIVSQGFG
ITSVLEMAISSKDDILAKPFDPPVFLNLHIAWKKQRPVSQADRAFVDFLMSNR

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=263, Percent_Identity=31.9391634980989, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI1790399, Length=266, Percent_Identity=27.0676691729323, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI145693105, Length=293, Percent_Identity=27.3037542662116, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787601, Length=199, Percent_Identity=30.1507537688442, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1786401, Length=286, Percent_Identity=26.9230769230769, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1788481, Length=295, Percent_Identity=25.4237288135593, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788887, Length=257, Percent_Identity=28.4046692607004, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787879, Length=247, Percent_Identity=26.3157894736842, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788297, Length=194, Percent_Identity=30.4123711340206, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI2367136, Length=288, Percent_Identity=26.3888888888889, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788296, Length=250, Percent_Identity=26, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790262, Length=253, Percent_Identity=26.4822134387352, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787530, Length=261, Percent_Identity=21.8390804597701, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788748, Length=289, Percent_Identity=22.1453287197232, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789506, Length=159, Percent_Identity=28.9308176100629, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32813; Mature: 32813

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIRQLKHLDALASTGSFTAAAKKLNMAQPALSQSIKRLEIALGVTLVNRTSNKNDKLLA
CCHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEEECCCCCCCCEEE
LTAEGLVLHQHATLILKQIKQAEAQIRAMANLTSGEVRIAVPGMLGSFYLPSRLMAFRHK
EEECCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHC
YPELKLSLFEGGTRDALRMLQQEEVDIAIITAQDLQPEFDSQLLIREQMVIAMGAEHPLA
CCCEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHEECCCCCCC
EHNAVSLNDFFDHELVMFKTGYFHREWILSQAKDLGKKPNVAFETNLINLIKQIVSQGFG
CCCCEEEHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHCCCC
ITSVLEMAISSKDDILAKPFDPPVFLNLHIAWKKQRPVSQADRAFVDFLMSNR
HHHHHHHHHCCCCCCEECCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDIRQLKHLDALASTGSFTAAAKKLNMAQPALSQSIKRLEIALGVTLVNRTSNKNDKLLA
CCHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEEECCCCCCCCEEE
LTAEGLVLHQHATLILKQIKQAEAQIRAMANLTSGEVRIAVPGMLGSFYLPSRLMAFRHK
EEECCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHC
YPELKLSLFEGGTRDALRMLQQEEVDIAIITAQDLQPEFDSQLLIREQMVIAMGAEHPLA
CCCEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHEECCCCCCC
EHNAVSLNDFFDHELVMFKTGYFHREWILSQAKDLGKKPNVAFETNLINLIKQIVSQGFG
CCCCEEEHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHCCCC
ITSVLEMAISSKDDILAKPFDPPVFLNLHIAWKKQRPVSQADRAFVDFLMSNR
HHHHHHHHHCCCCCCEECCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]