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The map label for this gene is ymfK [H]

Identifier: 160876037

GI number: 160876037

Start: 3472018

End: 3472632

Strand: Direct

Name: ymfK [H]

Synonym: Sbal195_2927

Alternate gene names: 160876037

Gene position: 3472018-3472632 (Clockwise)

Preceding gene: 160876027

Following gene: 160876038

Centisome position: 64.93

GC content: 48.78

Gene sequence:

>615_bases
ATGGATATTGCAGAAAGGGTAAGAAAACTACGCAAGGCATTAGGCATGACTCAGTATCAGCTTGCAGACTTAGTCAGCAC
TGCGCAGACATCAATCCAGAAATTAGAGCGTGGTGATACTAAAAACCCTCGAAATATTGAGGCGCTAGCCAAAGCCTTAC
AGACGACACCTGAGTTTTTGCGCTTTGGCGTAGGGGATATGGACAACGCGACAGTGGTCGCCAGTGCAGGTAACTATTTA
CCGCTGATCAGTATGGTGCAAGCAGGCGTGTGGACCGAAATACAAGAATTACCTCCCCTCGATGTCGAGCTTTACCCCTG
CCCAATCAAATGCAGTCAACACTCGTTTATTGTGAGGGTGGAAGGCGAAAGCATGCTGCCCGATTTCAGACCTGGCGATT
TAATTTATGTTGACCCCGACGCACAGGTGGAGAACGGCAGCTATGTAGTGGCGCGCCTGGATGATGAAAACCAAGCCACC
TTCAAGCAGCTGATCATCGATGGCAATAAGAAATACCTCAAAGCCCTAAACCCCGACTGGCCGAATAAATTTGTCGAGAT
CAATGGTAACTGCACCATAGTCGGCAAAGTGGTATTCACAGGCAAGGCGCTGTAA

Upstream 100 bases:

>100_bases
TAAGCTTTTTGGATAGCCATTAGTTATTTGACTCAGATAACAAAAGGTTGTGATACTCTGTTTAAATCACTTAAGGTTAT
CGAGGTCACCAAATATTTAT

Downstream 100 bases:

>100_bases
TGATTTTTAAATAGCGAGTTTTTACAGAAGTAATTAAAGGGAATTTTTTAATGAGATGGATTTTCGTTTGCTTAACGTTA
TGTTTATTTACCCCTGCCAG

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MDIAERVRKLRKALGMTQYQLADLVSTAQTSIQKLERGDTKNPRNIEALAKALQTTPEFLRFGVGDMDNATVVASAGNYL
PLISMVQAGVWTEIQELPPLDVELYPCPIKCSQHSFIVRVEGESMLPDFRPGDLIYVDPDAQVENGSYVVARLDDENQAT
FKQLIIDGNKKYLKALNPDWPNKFVEINGNCTIVGKVVFTGKAL

Sequences:

>Translated_204_residues
MDIAERVRKLRKALGMTQYQLADLVSTAQTSIQKLERGDTKNPRNIEALAKALQTTPEFLRFGVGDMDNATVVASAGNYL
PLISMVQAGVWTEIQELPPLDVELYPCPIKCSQHSFIVRVEGESMLPDFRPGDLIYVDPDAQVENGSYVVARLDDENQAT
FKQLIIDGNKKYLKALNPDWPNKFVEINGNCTIVGKVVFTGKAL
>Mature_204_residues
MDIAERVRKLRKALGMTQYQLADLVSTAQTSIQKLERGDTKNPRNIEALAKALQTTPEFLRFGVGDMDNATVVASAGNYL
PLISMVQAGVWTEIQELPPLDVELYPCPIKCSQHSFIVRVEGESMLPDFRPGDLIYVDPDAQVENGSYVVARLDDENQAT
FKQLIIDGNKKYLKALNPDWPNKFVEINGNCTIVGKVVFTGKAL

Specific function: Unknown

COG id: COG1974

COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787391, Length=211, Percent_Identity=37.4407582938389, Blast_Score=144, Evalue=3e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 22658; Mature: 22658

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIAERVRKLRKALGMTQYQLADLVSTAQTSIQKLERGDTKNPRNIEALAKALQTTPEFL
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHH
RFGVGDMDNATVVASAGNYLPLISMVQAGVWTEIQELPPLDVELYPCPIKCSQHSFIVRV
HCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEECCCEEEEEE
EGESMLPDFRPGDLIYVDPDAQVENGSYVVARLDDENQATFKQLIIDGNKKYLKALNPDW
CCCCCCCCCCCCCEEEECCCCEECCCCEEEEEECCCCHHHHHHHHHCCCHHHHHHCCCCC
PNKFVEINGNCTIVGKVVFTGKAL
CCCEEEECCCEEEEEEEEEECCCC
>Mature Secondary Structure
MDIAERVRKLRKALGMTQYQLADLVSTAQTSIQKLERGDTKNPRNIEALAKALQTTPEFL
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHH
RFGVGDMDNATVVASAGNYLPLISMVQAGVWTEIQELPPLDVELYPCPIKCSQHSFIVRV
HCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEECCCEEEEEE
EGESMLPDFRPGDLIYVDPDAQVENGSYVVARLDDENQATFKQLIIDGNKKYLKALNPDW
CCCCCCCCCCCCCEEEECCCCEECCCCEEEEEECCCCHHHHHHHHHCCCHHHHHHCCCCC
PNKFVEINGNCTIVGKVVFTGKAL
CCCEEEECCCEEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]