| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is btuB [H]
Identifier: 160875811
GI number: 160875811
Start: 3203837
End: 3206497
Strand: Reverse
Name: btuB [H]
Synonym: Sbal195_2699
Alternate gene names: 160875811
Gene position: 3206497-3203837 (Counterclockwise)
Preceding gene: 160875812
Following gene: 160875808
Centisome position: 59.96
GC content: 43.22
Gene sequence:
>2661_bases ATGCGCTATTTAAGTTTAACGGCCAAAGCCGTTCGTGCTAGTTTAATTACAGTGGCGACAAGCAGTGTGGTTTTTTCGGG ATTAGGCTTTTCTGCAATGGGAAATGCAGCAGAAGAAAATACCAAAGTTGAACGCATTGAAGTGACGGGTTCTCGTATTA AACAAGTTGATATGGAAACTGTTTCACCCGTGACAGTCATTAATGCTGCGGATATTGCTATGACGGGGGAAAAGACCGTT GCTGACGTATTGAATAACTCTGCGATAAACAGTTTTGGTTCTTGGCGTGGTATTTCAGGTTATGGATCTGGTGCAAGCTC TACCAGCAATGTCAATTTACGCGGTTTAGGATCGTCTGCGACCTTAGTGTTATTAGACGGACGCCGTATGCCAGGGACGA GTTCGAGCTCTGGCTCAGTGGCAGATACATCTTCTATCCCTATGGCTATCGTGGAGCGTATTGAAATCCTGCGGGATGGC GCTTCAGCAGTCTATGGTTCCGATGCGGTTGCGGGCGTGATAAACATTATCACTAAGAAAGAGTTTGAAGGTTTTCAGCT TGATTACAGTACAGAGCAACCAAGCGTAGAAGGGGGCGATGCTAACCGTTTATCGCTCGCAACTGGCTTTAATACAGATA AAGGCAATATCACTCTCACCTATGAATATTATGATACAAAAGCGGTAATGGACCGTGATATTTGGCGAATGGATGATTCA AGTTATAACGCCTATAGCGGATATAGCTCAGTACCAAACGGTAAATATGGACCAGGCAATGGTAGCTGGTATAGTAATTC AGATATATGTGAAAAAACGGAAAATACCATAGACTCAGGTGATGGTCGTTGTTTATATAATCATGGTAATGTCACCAAAT TATTTGGCGATCAAACCCGTAATTCGCTGTTATCTAATTTCTCCTATGAGATTTCAGAAAATATAAAATTTCGAGGCCGA GCTTCTGCTTCATTAGCTGAAACTGAAACCCGTTATGCCGGTACGCCAGTATCAACTAATACCCCTGTGATGAGTGCCGA TAATAAGTACAACCCAGTTGGCGAAGAATTAGTTATTTCTATGCGAGGCGCGCAACTTGGCGAGCGAGATACATTAACTG AAACCAACAATTTTGATATTCTTGGTGGCTTTGTTGGCACGATAGATTCAGGTAATGGTATCGACTGGGAATTAAATGCC CAGCATGCGACCTCAACAACAAACAGTTTTAACTACAATTTACTTAATGACGATATTATTCAGCAAGAAATTGATTCAGA GCAATATGATATTTTCAATACCTCTGGCATGAGTTATGAGCAGTGGGACCAACAGATGACAGATCTGTATCGCAAAGCTG CACATACTGGGGTTTATCAGGGTAAATTCGAAAGTACTCAATTGGATGGTCTTGCTTCGACCTTACTGCTCGATGACGGT GATTTTTCGGTCGCTATGGTCGGCGGTCTTGAATATGAAATGATCAAGTTTAAGCAAACCAGTGATCCAGAATCGGCCGC GGGTATTATCTCCGGCGGTTCGGGTGGTGATGATGTGGATGCCACGCGTGACCGTAGCGCCGCTTATTTGGAACTCCAAG TTGGCTTACCTGCCAACGTTGAGTTCTCTGCCGCAGTACGTTATGAGCGCTATGAGCAGGAAGGAACTCTCACAGGGCCT CAAGGGGAGGTGGTTAACTCATCGACCTTCGATGCCGTGGTGCCTAAGTTTGGTTTAAGCTGGCGTCCTATAGACACGCT ATTACTGCGTGCTAGCTATGGTGACTCATTCCGCGCGCCGAATATGAGTGAAATGTTCTCGTCTCAATCTTTGAGTTTTG AGAAGAGCGTTGACTCATTATGGTGTAATGAACCCGGTAATGTGGATGCCATATATTGCGCTACCAATAACCAACATAAA ACTTGGTTTGGTGGTAACCCAGATCTAGAAGCTGAAGAAGGTAACTCGTTAACCTTTGGCGGCGTTTGGAATGTCACTGA TGCATGGAACTTGGAGTTATCCTATTACTCAATCACCTACGACAATAAAATTGAGTCGATTGATGTAGATGATATCCTGC GCGATGAAATCAAGAATGGATCGTCTCCCTATGTGACCCGTGGTCCAGATGGCAAGATTGAGTATATTGAGGCGGGAATA CGTAATTTAGCCACAGTTGAGACCTCAGGTATCGATTTTGTAACGGCTTATAACTTAGAGACAGGTTTTGGTGATTTCAA TTTCAAACTGGATTTGACTCACGTGCTTGATTTTAAGAAGCAGGATAATGCCGAATCAGAGATGATCGATTACGCAGGAA CGACGGACTCACCCGATTGGCGTGGCAACTTTGCGACAAGTTGGAAATACGATGATTTCTCTGCCGCATGGACAGTCGTC TATATTGGTAGTCAATCAGCAAGTTATTTCAACGAGTTAGAAAAAACTGACCGTTATGTCGATTACGATAATTACTTTAA ACACAATATCCAATTTGGTTATACCCATGCTTATAACGGCTCTATCACAGTAGGGGTGAATAATGTGTTTGATGCTGAAA CACCAAACTATTATACCTACGCCGATTATCGCGATGTGAATGTGGGTTTATATGATGTGTTAGGTAGAACGTATTACCTG AGAATAAACCAGAAGTTTTAG
Upstream 100 bases:
>100_bases TAAATGTTGCGCATTAACATTATTCCTACAGCGAAATAGAGTTCGCTGGCTAAATATAAAAATAACAAACAAAAGTTTTG TTTACCTCAAGGAGAGATTA
Downstream 100 bases:
>100_bases GTTGTCCGCCCTCCCTGGATAACTCAAACCTCCGCTAGCGGAGGTTTTTTTGCTTATTTTTTCCTGCTTTTCAGGTTGCT TACCGGATATCGGATCAGCG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 886; Mature: 886
Protein sequence:
>886_residues MRYLSLTAKAVRASLITVATSSVVFSGLGFSAMGNAAEENTKVERIEVTGSRIKQVDMETVSPVTVINAADIAMTGEKTV ADVLNNSAINSFGSWRGISGYGSGASSTSNVNLRGLGSSATLVLLDGRRMPGTSSSSGSVADTSSIPMAIVERIEILRDG ASAVYGSDAVAGVINIITKKEFEGFQLDYSTEQPSVEGGDANRLSLATGFNTDKGNITLTYEYYDTKAVMDRDIWRMDDS SYNAYSGYSSVPNGKYGPGNGSWYSNSDICEKTENTIDSGDGRCLYNHGNVTKLFGDQTRNSLLSNFSYEISENIKFRGR ASASLAETETRYAGTPVSTNTPVMSADNKYNPVGEELVISMRGAQLGERDTLTETNNFDILGGFVGTIDSGNGIDWELNA QHATSTTNSFNYNLLNDDIIQQEIDSEQYDIFNTSGMSYEQWDQQMTDLYRKAAHTGVYQGKFESTQLDGLASTLLLDDG DFSVAMVGGLEYEMIKFKQTSDPESAAGIISGGSGGDDVDATRDRSAAYLELQVGLPANVEFSAAVRYERYEQEGTLTGP QGEVVNSSTFDAVVPKFGLSWRPIDTLLLRASYGDSFRAPNMSEMFSSQSLSFEKSVDSLWCNEPGNVDAIYCATNNQHK TWFGGNPDLEAEEGNSLTFGGVWNVTDAWNLELSYYSITYDNKIESIDVDDILRDEIKNGSSPYVTRGPDGKIEYIEAGI RNLATVETSGIDFVTAYNLETGFGDFNFKLDLTHVLDFKKQDNAESEMIDYAGTTDSPDWRGNFATSWKYDDFSAAWTVV YIGSQSASYFNELEKTDRYVDYDNYFKHNIQFGYTHAYNGSITVGVNNVFDAETPNYYTYADYRDVNVGLYDVLGRTYYL RINQKF
Sequences:
>Translated_886_residues MRYLSLTAKAVRASLITVATSSVVFSGLGFSAMGNAAEENTKVERIEVTGSRIKQVDMETVSPVTVINAADIAMTGEKTV ADVLNNSAINSFGSWRGISGYGSGASSTSNVNLRGLGSSATLVLLDGRRMPGTSSSSGSVADTSSIPMAIVERIEILRDG ASAVYGSDAVAGVINIITKKEFEGFQLDYSTEQPSVEGGDANRLSLATGFNTDKGNITLTYEYYDTKAVMDRDIWRMDDS SYNAYSGYSSVPNGKYGPGNGSWYSNSDICEKTENTIDSGDGRCLYNHGNVTKLFGDQTRNSLLSNFSYEISENIKFRGR ASASLAETETRYAGTPVSTNTPVMSADNKYNPVGEELVISMRGAQLGERDTLTETNNFDILGGFVGTIDSGNGIDWELNA QHATSTTNSFNYNLLNDDIIQQEIDSEQYDIFNTSGMSYEQWDQQMTDLYRKAAHTGVYQGKFESTQLDGLASTLLLDDG DFSVAMVGGLEYEMIKFKQTSDPESAAGIISGGSGGDDVDATRDRSAAYLELQVGLPANVEFSAAVRYERYEQEGTLTGP QGEVVNSSTFDAVVPKFGLSWRPIDTLLLRASYGDSFRAPNMSEMFSSQSLSFEKSVDSLWCNEPGNVDAIYCATNNQHK TWFGGNPDLEAEEGNSLTFGGVWNVTDAWNLELSYYSITYDNKIESIDVDDILRDEIKNGSSPYVTRGPDGKIEYIEAGI RNLATVETSGIDFVTAYNLETGFGDFNFKLDLTHVLDFKKQDNAESEMIDYAGTTDSPDWRGNFATSWKYDDFSAAWTVV YIGSQSASYFNELEKTDRYVDYDNYFKHNIQFGYTHAYNGSITVGVNNVFDAETPNYYTYADYRDVNVGLYDVLGRTYYL RINQKF >Mature_886_residues MRYLSLTAKAVRASLITVATSSVVFSGLGFSAMGNAAEENTKVERIEVTGSRIKQVDMETVSPVTVINAADIAMTGEKTV ADVLNNSAINSFGSWRGISGYGSGASSTSNVNLRGLGSSATLVLLDGRRMPGTSSSSGSVADTSSIPMAIVERIEILRDG ASAVYGSDAVAGVINIITKKEFEGFQLDYSTEQPSVEGGDANRLSLATGFNTDKGNITLTYEYYDTKAVMDRDIWRMDDS SYNAYSGYSSVPNGKYGPGNGSWYSNSDICEKTENTIDSGDGRCLYNHGNVTKLFGDQTRNSLLSNFSYEISENIKFRGR ASASLAETETRYAGTPVSTNTPVMSADNKYNPVGEELVISMRGAQLGERDTLTETNNFDILGGFVGTIDSGNGIDWELNA QHATSTTNSFNYNLLNDDIIQQEIDSEQYDIFNTSGMSYEQWDQQMTDLYRKAAHTGVYQGKFESTQLDGLASTLLLDDG DFSVAMVGGLEYEMIKFKQTSDPESAAGIISGGSGGDDVDATRDRSAAYLELQVGLPANVEFSAAVRYERYEQEGTLTGP QGEVVNSSTFDAVVPKFGLSWRPIDTLLLRASYGDSFRAPNMSEMFSSQSLSFEKSVDSLWCNEPGNVDAIYCATNNQHK TWFGGNPDLEAEEGNSLTFGGVWNVTDAWNLELSYYSITYDNKIESIDVDDILRDEIKNGSSPYVTRGPDGKIEYIEAGI RNLATVETSGIDFVTAYNLETGFGDFNFKLDLTHVLDFKKQDNAESEMIDYAGTTDSPDWRGNFATSWKYDDFSAAWTVV YIGSQSASYFNELEKTDRYVDYDNYFKHNIQFGYTHAYNGSITVGVNNVFDAETPNYYTYADYRDVNVGLYDVLGRTYYL RINQKF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=238, Percent_Identity=32.3529411764706, Blast_Score=91, Evalue=4e-19, Organism=Escherichia coli, GI1788478, Length=138, Percent_Identity=34.0579710144928, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1786798, Length=160, Percent_Identity=30.625, Blast_Score=67, Evalue=7e-12,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 97265; Mature: 97265
Theoretical pI: Translated: 4.15; Mature: 4.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRYLSLTAKAVRASLITVATSSVVFSGLGFSAMGNAAEENTKVERIEVTGSRIKQVDMET CCEEHHHHHHHHHHHHEEEHHHHHHCCCCHHHCCCCCCCCCEEEEEEECCCHHHEECHHH VSPVTVINAADIAMTGEKTVADVLNNSAINSFGSWRGISGYGSGASSTSNVNLRGLGSSA CCCEEEEECCCEEECCCHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCE TLVLLDGRRMPGTSSSSGSVADTSSIPMAIVERIEILRDGASAVYGSDAVAGVINIITKK EEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC EFEGFQLDYSTEQPSVEGGDANRLSLATGFNTDKGNITLTYEYYDTKAVMDRDIWRMDDS CCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCHHHHCCHHEECCCC SYNAYSGYSSVPNGKYGPGNGSWYSNSDICEKTENTIDSGDGRCLYNHGNVTKLFGDQTR CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCCEEEECCCHHH NSLLSNFSYEISENIKFRGRASASLAETETRYAGTPVSTNTPVMSADNKYNPVGEELVIS HHHHHCCCEEECCCEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCEEEE MRGAQLGERDTLTETNNFDILGGFVGTIDSGNGIDWELNAQHATSTTNSFNYNLLNDDII ECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEECCCCCCCCCCCEEEEECCHHHH QQEIDSEQYDIFNTSGMSYEQWDQQMTDLYRKAAHTGVYQGKFESTQLDGLASTLLLDDG HHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCEEEEEEECC DFSVAMVGGLEYEMIKFKQTSDPESAAGIISGGSGGDDVDATRDRSAAYLELQVGLPANV CEEEEEECCCEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCC EFSAAVRYERYEQEGTLTGPQGEVVNSSTFDAVVPKFGLSWRPIDTLLLRASYGDSFRAP EEHEEEEEHHHHCCCCCCCCCCCEECCCCHHHHHHCCCCCCCCHHHEEEEECCCCCCCCC NMSEMFSSQSLSFEKSVDSLWCNEPGNVDAIYCATNNQHKTWFGGNPDLEAEEGNSLTFG CHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCEEECCCCCCCCCCCCEEEEC GVWNVTDAWNLELSYYSITYDNKIESIDVDDILRDEIKNGSSPYVTRGPDGKIEYIEAGI CEECCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHH RNLATVETSGIDFVTAYNLETGFGDFNFKLDLTHVLDFKKQDNAESEMIDYAGTTDSPDW HHEEEEEECCCEEEEEEECCCCCCCEEEEEEEHHHCCCCCCCCCHHHHEEECCCCCCCCC RGNFATSWKYDDFSAAWTVVYIGSQSASYFNELEKTDRYVDYDNYFKHNIQFGYTHAYNG CCCCEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCHHEEECEEEEEEEEECC SITVGVNNVFDAETPNYYTYADYRDVNVGLYDVLGRTYYLRINQKF EEEEEECCEECCCCCCEEEEECCEECCCCHHHHHCCEEEEEEECCC >Mature Secondary Structure MRYLSLTAKAVRASLITVATSSVVFSGLGFSAMGNAAEENTKVERIEVTGSRIKQVDMET CCEEHHHHHHHHHHHHEEEHHHHHHCCCCHHHCCCCCCCCCEEEEEEECCCHHHEECHHH VSPVTVINAADIAMTGEKTVADVLNNSAINSFGSWRGISGYGSGASSTSNVNLRGLGSSA CCCEEEEECCCEEECCCHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCE TLVLLDGRRMPGTSSSSGSVADTSSIPMAIVERIEILRDGASAVYGSDAVAGVINIITKK EEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC EFEGFQLDYSTEQPSVEGGDANRLSLATGFNTDKGNITLTYEYYDTKAVMDRDIWRMDDS CCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCHHHHCCHHEECCCC SYNAYSGYSSVPNGKYGPGNGSWYSNSDICEKTENTIDSGDGRCLYNHGNVTKLFGDQTR CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCCEEEECCCHHH NSLLSNFSYEISENIKFRGRASASLAETETRYAGTPVSTNTPVMSADNKYNPVGEELVIS HHHHHCCCEEECCCEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCEEEE MRGAQLGERDTLTETNNFDILGGFVGTIDSGNGIDWELNAQHATSTTNSFNYNLLNDDII ECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEECCCCCCCCCCCEEEEECCHHHH QQEIDSEQYDIFNTSGMSYEQWDQQMTDLYRKAAHTGVYQGKFESTQLDGLASTLLLDDG HHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCEEEEEEECC DFSVAMVGGLEYEMIKFKQTSDPESAAGIISGGSGGDDVDATRDRSAAYLELQVGLPANV CEEEEEECCCEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCC EFSAAVRYERYEQEGTLTGPQGEVVNSSTFDAVVPKFGLSWRPIDTLLLRASYGDSFRAP EEHEEEEEHHHHCCCCCCCCCCCEECCCCHHHHHHCCCCCCCCHHHEEEEECCCCCCCCC NMSEMFSSQSLSFEKSVDSLWCNEPGNVDAIYCATNNQHKTWFGGNPDLEAEEGNSLTFG CHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCEEECCCCCCCCCCCCEEEEC GVWNVTDAWNLELSYYSITYDNKIESIDVDDILRDEIKNGSSPYVTRGPDGKIEYIEAGI CEECCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHH RNLATVETSGIDFVTAYNLETGFGDFNFKLDLTHVLDFKKQDNAESEMIDYAGTTDSPDW HHEEEEEECCCEEEEEEECCCCCCCEEEEEEEHHHCCCCCCCCCHHHHEEECCCCCCCCC RGNFATSWKYDDFSAAWTVVYIGSQSASYFNELEKTDRYVDYDNYFKHNIQFGYTHAYNG CCCCEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCHHEEECEEEEEEEEECC SITVGVNNVFDAETPNYYTYADYRDVNVGLYDVLGRTYYLRINQKF EEEEEECCEECCCCCCEEEEECCEECCCCHHHHHCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA