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The map label for this gene is ykfC [H]

Identifier: 160875629

GI number: 160875629

Start: 2971884

End: 2973356

Strand: Reverse

Name: ykfC [H]

Synonym: Sbal195_2517

Alternate gene names: 160875629

Gene position: 2973356-2971884 (Counterclockwise)

Preceding gene: 160875634

Following gene: 160875628

Centisome position: 55.6

GC content: 45.35

Gene sequence:

>1473_bases
ATGATGATTTCAAAAGAGATTAGTGCCTCTCCTGACAGTGCTCAATGGCAGTCAATCGACTGGAAATCCGTAGAGTCGCA
TGTATTAAAGCTTCAGATGCGTATCGCAAAGGCAACAAAAGAAGGTGAGCACGGCAAGGTAAAAGCCTTGCAATGGTTAC
TGACGCACTCGCGCTCAGCAAAACTCCTTGCTGTTAAACGAGTGTCGAAAAACAAAGGCAGTAAAACGCCTGGAATAGAC
GGCATCATCTGGAACACAGATGCACGCCGCATGAAAGCCGTCAATCAATTGAGCAGAAAGGCATACATAGCTAAGCCGCT
CAAGCGTATTTACATCCCAAAAAAGAATGGCAAGCTTCGACCGCTGGGTATCCCGTGCATGATAGACAGAGCGCAACAAG
CACTCCACCTTCTTGCACTCGAGCCCGTGTCAGAAACACTTGCCGACCCTAACAGCTATGGATTTAGACCAAACCGCAGT
ACTGCTGACGCTGTCGATCAGTGCTTTAAGTGTTTGGCTCAAAAGAAATCAGCCCAATGGGTACTCGAAGGTGATATCAA
AGCCTGTTTTGACAAGATCGGTCATCAATGGCTTCTTGATAACATCACCGTAGATAAGCGGATGTTGGAGCAATGGTTAA
AGTCTGGTTTTATGGATAAAGGGCTGTTTTATCGTACTGACGAGGGCACGCCACAAGGAGGAGTTATATCCCCCTCCTTG
ATGTTAATGACTCTTGCAGGTCTTGAGCAGCACATAAAATCCACCGCCCTCAAAAAGGGGACTAGAGCCAACTTTATTGG
GTACGCCGACGATTTCGTCGTCACTTGTGCTTCAAAGGAAGTGCTGGAGAACGATATCAAACCGTTGATTACTGACTTCT
TAGCAGAAAGAGGCTTAACACTATCCGAAGAGAAAACGCATATCACTCACATCAACGATGGCTTTGACTTCTTAGGTTTT
AACCATAGGAAGTACAAAGGAAAACTGCTCATTAAACCGAGTAAATCCAATACGTTGATGTTCTTAAGTCATCTGCGAGG
ACTCATCAAAAAGCACGTAACCCTACCCGTGAACGATCTTATCAAACTGATAAATCCGAAACTTAGGGGATGGTCGAATT
ACTATCGACACTGCGTCGCGAAACAGGTGTTCGGATATGTAAGCCACAAGCTATTCCATGCGTTATGGCACTGGGCCAAA
AGGCGTCATCCAACCAAATCAAAAACTTGGATAGCCCTTAAATACTTCGTCAATCGAAAAGGCCAGTGGCAATTTCACGG
TTGGCAGAAGTTCTTGGGTATGGATTGCCAGTTCAATCTCTTCCAAATAGCCAAAGTGCCTATCGAGAGACATGTGAAAA
TCCGAAGTTCTGCAACGCCATTTGACCCTCAATACCAAGAATACTTGGTGAAGAGAAAGTCCAAAAGGCTAGCTCGCAAC
TCTTGGAACGAACCTGCTCTGACTGCTTTATAA

Upstream 100 bases:

>100_bases
ATGCAGATACAGACAACTGTCTGGCACGAAAGTGAGCCCACTTCCGACTGGTCTCCCGTTGCGAGAGAATTTGAAGGACT
TTATCCAAGGAGAAACGCAA

Downstream 100 bases:

>100_bases
GTTGCTGGGTATCAAACGATGCTTTTGTGGAGGCTTGAGCCGTATGCAGTGAAAGTTGCACGTACGGTTCTTAGGGAGAC
GGCACTTGGTAACAAGTGTC

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 490; Mature: 490

Protein sequence:

>490_residues
MMISKEISASPDSAQWQSIDWKSVESHVLKLQMRIAKATKEGEHGKVKALQWLLTHSRSAKLLAVKRVSKNKGSKTPGID
GIIWNTDARRMKAVNQLSRKAYIAKPLKRIYIPKKNGKLRPLGIPCMIDRAQQALHLLALEPVSETLADPNSYGFRPNRS
TADAVDQCFKCLAQKKSAQWVLEGDIKACFDKIGHQWLLDNITVDKRMLEQWLKSGFMDKGLFYRTDEGTPQGGVISPSL
MLMTLAGLEQHIKSTALKKGTRANFIGYADDFVVTCASKEVLENDIKPLITDFLAERGLTLSEEKTHITHINDGFDFLGF
NHRKYKGKLLIKPSKSNTLMFLSHLRGLIKKHVTLPVNDLIKLINPKLRGWSNYYRHCVAKQVFGYVSHKLFHALWHWAK
RRHPTKSKTWIALKYFVNRKGQWQFHGWQKFLGMDCQFNLFQIAKVPIERHVKIRSSATPFDPQYQEYLVKRKSKRLARN
SWNEPALTAL

Sequences:

>Translated_490_residues
MMISKEISASPDSAQWQSIDWKSVESHVLKLQMRIAKATKEGEHGKVKALQWLLTHSRSAKLLAVKRVSKNKGSKTPGID
GIIWNTDARRMKAVNQLSRKAYIAKPLKRIYIPKKNGKLRPLGIPCMIDRAQQALHLLALEPVSETLADPNSYGFRPNRS
TADAVDQCFKCLAQKKSAQWVLEGDIKACFDKIGHQWLLDNITVDKRMLEQWLKSGFMDKGLFYRTDEGTPQGGVISPSL
MLMTLAGLEQHIKSTALKKGTRANFIGYADDFVVTCASKEVLENDIKPLITDFLAERGLTLSEEKTHITHINDGFDFLGF
NHRKYKGKLLIKPSKSNTLMFLSHLRGLIKKHVTLPVNDLIKLINPKLRGWSNYYRHCVAKQVFGYVSHKLFHALWHWAK
RRHPTKSKTWIALKYFVNRKGQWQFHGWQKFLGMDCQFNLFQIAKVPIERHVKIRSSATPFDPQYQEYLVKRKSKRLARN
SWNEPALTAL
>Mature_490_residues
MMISKEISASPDSAQWQSIDWKSVESHVLKLQMRIAKATKEGEHGKVKALQWLLTHSRSAKLLAVKRVSKNKGSKTPGID
GIIWNTDARRMKAVNQLSRKAYIAKPLKRIYIPKKNGKLRPLGIPCMIDRAQQALHLLALEPVSETLADPNSYGFRPNRS
TADAVDQCFKCLAQKKSAQWVLEGDIKACFDKIGHQWLLDNITVDKRMLEQWLKSGFMDKGLFYRTDEGTPQGGVISPSL
MLMTLAGLEQHIKSTALKKGTRANFIGYADDFVVTCASKEVLENDIKPLITDFLAERGLTLSEEKTHITHINDGFDFLGF
NHRKYKGKLLIKPSKSNTLMFLSHLRGLIKKHVTLPVNDLIKLINPKLRGWSNYYRHCVAKQVFGYVSHKLFHALWHWAK
RRHPTKSKTWIALKYFVNRKGQWQFHGWQKFLGMDCQFNLFQIAKVPIERHVKIRSSATPFDPQYQEYLVKRKSKRLARN
SWNEPALTAL

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=319, Percent_Identity=27.8996865203762, Blast_Score=99, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6226521, Length=327, Percent_Identity=24.1590214067278, Blast_Score=96, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 56197; Mature: 56197

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMISKEISASPDSAQWQSIDWKSVESHVLKLQMRIAKATKEGEHGKVKALQWLLTHSRSA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC
KLLAVKRVSKNKGSKTPGIDGIIWNTDARRMKAVNQLSRKAYIAKPLKRIYIPKKNGKLR
HHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PLGIPCMIDRAQQALHLLALEPVSETLADPNSYGFRPNRSTADAVDQCFKCLAQKKSAQW
CCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCE
VLEGDIKACFDKIGHQWLLDNITVDKRMLEQWLKSGFMDKGLFYRTDEGTPQGGVISPSL
EEECCHHHHHHHCCCCEECCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHH
MLMTLAGLEQHIKSTALKKGTRANFIGYADDFVVTCASKEVLENDIKPLITDFLAERGLT
HHHHHHHHHHHHHHHHHHCCCCCCCCEECCCEEEEECCHHHHHHHHHHHHHHHHHHCCCC
LSEEKTHITHINDGFDFLGFNHRKYKGKLLIKPSKSNTLMFLSHLRGLIKKHVTLPVNDL
CCCCCCEEEEECCCCHHCCCCCCEECCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHH
IKLINPKLRGWSNYYRHCVAKQVFGYVSHKLFHALWHWAKRRHPTKSKTWIALKYFVNRK
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC
GQWQFHGWQKFLGMDCQFNLFQIAKVPIERHVKIRSSATPFDPQYQEYLVKRKSKRLARN
CCEEECHHHHHHCCCCCCCHHHHHHCCHHHCEEECCCCCCCCHHHHHHHHHHHHHHHHHC
SWNEPALTAL
CCCCCCCCCC
>Mature Secondary Structure
MMISKEISASPDSAQWQSIDWKSVESHVLKLQMRIAKATKEGEHGKVKALQWLLTHSRSA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC
KLLAVKRVSKNKGSKTPGIDGIIWNTDARRMKAVNQLSRKAYIAKPLKRIYIPKKNGKLR
HHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PLGIPCMIDRAQQALHLLALEPVSETLADPNSYGFRPNRSTADAVDQCFKCLAQKKSAQW
CCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCE
VLEGDIKACFDKIGHQWLLDNITVDKRMLEQWLKSGFMDKGLFYRTDEGTPQGGVISPSL
EEECCHHHHHHHCCCCEECCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHH
MLMTLAGLEQHIKSTALKKGTRANFIGYADDFVVTCASKEVLENDIKPLITDFLAERGLT
HHHHHHHHHHHHHHHHHHCCCCCCCCEECCCEEEEECCHHHHHHHHHHHHHHHHHHCCCC
LSEEKTHITHINDGFDFLGFNHRKYKGKLLIKPSKSNTLMFLSHLRGLIKKHVTLPVNDL
CCCCCCEEEEECCCCHHCCCCCCEECCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHH
IKLINPKLRGWSNYYRHCVAKQVFGYVSHKLFHALWHWAKRRHPTKSKTWIALKYFVNRK
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC
GQWQFHGWQKFLGMDCQFNLFQIAKVPIERHVKIRSSATPFDPQYQEYLVKRKSKRLARN
CCEEECHHHHHHCCCCCCCHHHHHHCCHHHCEEECCCCCCCCHHHHHHHHHHHHHHHHHC
SWNEPALTAL
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]