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The map label for this gene is yddU [C]

Identifier: 160875460

GI number: 160875460

Start: 2768733

End: 2769941

Strand: Reverse

Name: yddU [C]

Synonym: Sbal195_2348

Alternate gene names: 160875460

Gene position: 2769941-2768733 (Counterclockwise)

Preceding gene: 160875461

Following gene: 160875459

Centisome position: 51.8

GC content: 43.01

Gene sequence:

>1209_bases
ATGAATATTCTCATCATAGATGATCAGCGCTTTATTCGAGAAACCATGAAAGCCGATATCCATAAGTTCTTGGTTGACGA
TAATGTGCAGATCTATGAGGCCTGTAATGGTAATCAAGGCATAGAACTGATTATTGACATCGAAGTGGTGCTTGATTTGA
TCATCATAGATCTCAAGATGGACCAAGGAGATGGAATCGCAGTCATCAATATGTTGGCCTCCGAGCCCCGTTTTGCCGCG
ATTCCGATTGCGGTGATCAGCTCTTCGGATAAACGGACTTTAGAGCTGGTGGACAATATCATCACAGTGCTGAGGCTCAA
CTTGCTGGGGGTATTTGCTAAGCCTATCAACGTGAATGATATTTTAACGCCATTGTTAGAAGCATCCACGGATAGACATC
ATGCGCATCAACATCAATCGATCGTGCAAAACAGGGCGGCCAATATCAATGTGCGGCAATTGCTTAAAGATGAACAATTA
ATTCTCTGCTATCAACCTAAGATCAACCTCAAGACCAAGGAAATCATAGGTTTTGAAGTGCTGTCGCGGCTTTGCGATCA
ATCCAATGGCTATATTTATCCCGACGTTTTTTTGCCACTGGTTAATCAACAGGGGCTGAATAGCCTGTTCTCGCGGATGG
TCATTTCCCAGGCGTTGCAATGTTGGTCGCGTCAACCTTTACTGACGGCGTTTGCGCTGTCGATTAACATTACCGCCGAC
GATCTGACCTGCGATGAACTGATTGAATTCATCATCGAATGTGGCCGTGAGCATAAACACATCCATGTGATTTTAGAGCT
CACTGAATCGCAAGAGATCATCAATCAAGATAGAGTGCTTAACTCAATTGCACGGCTGATTATCAACAATATTGATATTT
CCCTCGATGATTTCGGTAAAAGTTATTCCACTTATGATCGCCTCGATGCCATTCCCTTTAAAGAAATTAAAATTGATAAA
AGTTTTGTCTCCGATATGGATATTAATCACCAACATTATCTCATTGTGGAGTCCACCATAGCACTTGCGCAGAAGATGCA
CGTAAAGGTGGTTGCCGAAGGCGTTGAGACAAGTGCAATAGAAGCCATTCTCTCTGAACTAGGCTGTGATGTTGCCCAAG
GCTATTTATATAGCCCGCCAATTGAAGGTCGTTATCTTATTGATTGGATAGCGCAATACAATAGGGAATGCCTAACCCAT
GGATACTAA

Upstream 100 bases:

>100_bases
AGGTGATGGCAAATCGTAATCTACTCAAGCTTTCCGTCATTCCTTCATCAAAATCCCAAACGATCGATCCCATTTTCTTC
ATGCAGTTAGAGACCCCTAT

Downstream 100 bases:

>100_bases
GTCAATAATTAATAATGAGTTAACACTGGCCTTATCGACATTTTTTGAGCAATACAGCCAAGAACAGCAATCGCGACTGC
GATCAACACTTATCGCAGAG

Product: response regulator receiver modulated diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MNILIIDDQRFIRETMKADIHKFLVDDNVQIYEACNGNQGIELIIDIEVVLDLIIIDLKMDQGDGIAVINMLASEPRFAA
IPIAVISSSDKRTLELVDNIITVLRLNLLGVFAKPINVNDILTPLLEASTDRHHAHQHQSIVQNRAANINVRQLLKDEQL
ILCYQPKINLKTKEIIGFEVLSRLCDQSNGYIYPDVFLPLVNQQGLNSLFSRMVISQALQCWSRQPLLTAFALSINITAD
DLTCDELIEFIIECGREHKHIHVILELTESQEIINQDRVLNSIARLIINNIDISLDDFGKSYSTYDRLDAIPFKEIKIDK
SFVSDMDINHQHYLIVESTIALAQKMHVKVVAEGVETSAIEAILSELGCDVAQGYLYSPPIEGRYLIDWIAQYNRECLTH
GY

Sequences:

>Translated_402_residues
MNILIIDDQRFIRETMKADIHKFLVDDNVQIYEACNGNQGIELIIDIEVVLDLIIIDLKMDQGDGIAVINMLASEPRFAA
IPIAVISSSDKRTLELVDNIITVLRLNLLGVFAKPINVNDILTPLLEASTDRHHAHQHQSIVQNRAANINVRQLLKDEQL
ILCYQPKINLKTKEIIGFEVLSRLCDQSNGYIYPDVFLPLVNQQGLNSLFSRMVISQALQCWSRQPLLTAFALSINITAD
DLTCDELIEFIIECGREHKHIHVILELTESQEIINQDRVLNSIARLIINNIDISLDDFGKSYSTYDRLDAIPFKEIKIDK
SFVSDMDINHQHYLIVESTIALAQKMHVKVVAEGVETSAIEAILSELGCDVAQGYLYSPPIEGRYLIDWIAQYNRECLTH
GY
>Mature_402_residues
MNILIIDDQRFIRETMKADIHKFLVDDNVQIYEACNGNQGIELIIDIEVVLDLIIIDLKMDQGDGIAVINMLASEPRFAA
IPIAVISSSDKRTLELVDNIITVLRLNLLGVFAKPINVNDILTPLLEASTDRHHAHQHQSIVQNRAANINVRQLLKDEQL
ILCYQPKINLKTKEIIGFEVLSRLCDQSNGYIYPDVFLPLVNQQGLNSLFSRMVISQALQCWSRQPLLTAFALSINITAD
DLTCDELIEFIIECGREHKHIHVILELTESQEIINQDRVLNSIARLIINNIDISLDDFGKSYSTYDRLDAIPFKEIKIDK
SFVSDMDINHQHYLIVESTIALAQKMHVKVVAEGVETSAIEAILSELGCDVAQGYLYSPPIEGRYLIDWIAQYNRECLTH
GY

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=248, Percent_Identity=31.4516129032258, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI87081980, Length=239, Percent_Identity=29.2887029288703, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI1786507, Length=245, Percent_Identity=32.2448979591837, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787541, Length=251, Percent_Identity=30.6772908366534, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI87081743, Length=235, Percent_Identity=29.7872340425532, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI87082096, Length=236, Percent_Identity=34.3220338983051, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1790496, Length=257, Percent_Identity=28.4046692607004, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI87081845, Length=241, Percent_Identity=29.8755186721992, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787055, Length=239, Percent_Identity=31.7991631799163, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788502, Length=246, Percent_Identity=26.8292682926829, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1788849, Length=258, Percent_Identity=30.6201550387597, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI226510982, Length=235, Percent_Identity=25.9574468085106, Blast_Score=89, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 45563; Mature: 45563

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILIIDDQRFIRETMKADIHKFLVDDNVQIYEACNGNQGIELIIDIEVVLDLIIIDLKM
CEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHEEEEE
DQGDGIAVINMLASEPRFAAIPIAVISSSDKRTLELVDNIITVLRLNLLGVFAKPINVND
CCCCCEEEEEHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
ILTPLLEASTDRHHAHQHQSIVQNRAANINVRQLLKDEQLILCYQPKINLKTKEIIGFEV
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
LSRLCDQSNGYIYPDVFLPLVNQQGLNSLFSRMVISQALQCWSRQPLLTAFALSINITAD
HHHHHCCCCCEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEC
DLTCDELIEFIIECGREHKHIHVILELTESQEIINQDRVLNSIARLIINNIDISLDDFGK
CCCHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCC
SYSTYDRLDAIPFKEIKIDKSFVSDMDINHQHYLIVESTIALAQKMHVKVVAEGVETSAI
CCCHHHHHCCCCCHHEEECHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCHHHHH
EAILSELGCDVAQGYLYSPPIEGRYLIDWIAQYNRECLTHGY
HHHHHHHCCHHHCCCEECCCCCCHHHHHHHHHHCHHHHCCCC
>Mature Secondary Structure
MNILIIDDQRFIRETMKADIHKFLVDDNVQIYEACNGNQGIELIIDIEVVLDLIIIDLKM
CEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHEEEEE
DQGDGIAVINMLASEPRFAAIPIAVISSSDKRTLELVDNIITVLRLNLLGVFAKPINVND
CCCCCEEEEEHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
ILTPLLEASTDRHHAHQHQSIVQNRAANINVRQLLKDEQLILCYQPKINLKTKEIIGFEV
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
LSRLCDQSNGYIYPDVFLPLVNQQGLNSLFSRMVISQALQCWSRQPLLTAFALSINITAD
HHHHHCCCCCEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEC
DLTCDELIEFIIECGREHKHIHVILELTESQEIINQDRVLNSIARLIINNIDISLDDFGK
CCCHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCC
SYSTYDRLDAIPFKEIKIDKSFVSDMDINHQHYLIVESTIALAQKMHVKVVAEGVETSAI
CCCHHHHHCCCCCHHEEECHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCHHHHH
EAILSELGCDVAQGYLYSPPIEGRYLIDWIAQYNRECLTHGY
HHHHHHHCCHHHCCCEECCCCCCHHHHHHHHHHCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]