Definition | Shewanella baltica OS195 chromosome, complete genome. |
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Accession | NC_009997 |
Length | 5,347,283 |
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The map label for this gene is ygjG [C]
Identifier: 160874306
GI number: 160874306
Start: 1406722
End: 1408086
Strand: Reverse
Name: ygjG [C]
Synonym: Sbal195_1186
Alternate gene names: 160874306
Gene position: 1408086-1406722 (Counterclockwise)
Preceding gene: 160874308
Following gene: 160874305
Centisome position: 26.33
GC content: 49.82
Gene sequence:
>1365_bases ATGGCCGATTTGCCGCTCAATTCCTCAAGTGATGCTTCACATCAATCTTCAACTGAGCATCCCTCACTTGAACATTTCTG GATGCCTTTTACCGCCAACCGCCAATTCAAAGCCAACCCGCGGTTACTCACCAAAGCGGAAGGCATGTATTACACGGATA TTGATGGCAATAAGGTATTAGATGCTACCGCCGGTTTATGGTGTTGTAACGCAGGCCATGGTCGCAAAGAAATCAGCGAA GCGGTCAGCAAACAAATTAAAGAGATGGACTACGCGCCCTCCTTCCAAATGGGTCACCCTATCGCCTTTGAACTTGCCGA GCGCTTAGTCGAGCTAAGTCCTGAAGGATTAAACAAAGTCTTCTTTACTAACTCAGGTTCTGAGTCCGTCGATACAGCAC TTAAGATGGCACTTTGCTATCACAGAGCCAACGGTCAAGCCTCACGCACTCGCTTTATTGGGCGCGAAATGGGTTACCAC GGTGTCGGCTTTGGCGGCATCTCTGTGGGTGGGTTAAGCAATAATCGCAAGGCATTTAGCGGCCAATTACTGCAAGGCGT CGATCACTTACCCCACACCTTAGATATCCAAAATGCGGCATTTACCCGTGGACTCTCGCACTTTGGCGCAGAAAAAGCCG AGGTATTAGAACAGCTTGTTACCCTTCATGGTGCCGAGAATATTGCAGCCGTGATCGTTGAACCAATGTCGGGTTCAGCT GGGGTAATATTGCCGCCACAAGGTTACTTAAAACGTCTGCGTGAAATCACTAAAAAGCATGGCATCCTATTGATTTTTGA TGAAGTCATTACCGCTTTTGGCCGCGTTGGCGCCGCCTTTGCGAGTCAGCGTTGGGGCGTTATCCCAGATATAATCACCA CGGCTAAAGCCATCAATAACGGCGCGATTCCTATGGGCGCTGTGTTCGTGCAAGATTTTATCCACGACACTTGCATGCAA GGCCCTAATGAACTGATTGAGTTCTTCCACGGCTACACCTATTCCGGTCATCCAGTCGCTGCAGCGGCGGCGCTTGCCAC CCTATCGATTTATGAGAATGAGCAATTATTCGAACGCAGTTTTGAGCTTGAGCGCTACTTTGAAGACGCAGTGCACAGCC TCAAAGGGTTGCCGAATGTGATTGATATTCGCAACACAGGGCTAGTCGCTGGGATTCAATTCTCCCCTAACGCTCAAGGC GCGGGTAAACGGGGTTACGGCGTGTTTGAACACTGCTTCCGCCACGGCACTTTAGTGCGCGCCACGGGCGACATCATTGC CATGTCACCGCCACTGATTGTCGATAAACGCGAAATTGACCAAATGGTTAATAGCCTAAGCGATGCCATTAACGCCGTTG GATAA
Upstream 100 bases:
>100_bases AACTGCACACAGCTCTTCCATGTTCATTATTTCTAACATAGCATAGCAAATATTAGCCACCCTAAAACAAGACCTGAAAA TACAGGACAAGGTAGACACT
Downstream 100 bases:
>100_bases TAGCGCCAGCTGTTCGTTCCACTCTCACATTTAACACCCCGCTGCGGCGGGGAACATCAAAGGTTAACTATGCTCAAGAT CACTCACTTTGTTAATGGTC
Product: beta alanine--pyruvate transaminase
Products: NA
Alternate protein names: Omega-APT; Beta-alanine--pyruvate aminotransferase [H]
Number of amino acids: Translated: 454; Mature: 453
Protein sequence:
>454_residues MADLPLNSSSDASHQSSTEHPSLEHFWMPFTANRQFKANPRLLTKAEGMYYTDIDGNKVLDATAGLWCCNAGHGRKEISE AVSKQIKEMDYAPSFQMGHPIAFELAERLVELSPEGLNKVFFTNSGSESVDTALKMALCYHRANGQASRTRFIGREMGYH GVGFGGISVGGLSNNRKAFSGQLLQGVDHLPHTLDIQNAAFTRGLSHFGAEKAEVLEQLVTLHGAENIAAVIVEPMSGSA GVILPPQGYLKRLREITKKHGILLIFDEVITAFGRVGAAFASQRWGVIPDIITTAKAINNGAIPMGAVFVQDFIHDTCMQ GPNELIEFFHGYTYSGHPVAAAAALATLSIYENEQLFERSFELERYFEDAVHSLKGLPNVIDIRNTGLVAGIQFSPNAQG AGKRGYGVFEHCFRHGTLVRATGDIIAMSPPLIVDKREIDQMVNSLSDAINAVG
Sequences:
>Translated_454_residues MADLPLNSSSDASHQSSTEHPSLEHFWMPFTANRQFKANPRLLTKAEGMYYTDIDGNKVLDATAGLWCCNAGHGRKEISE AVSKQIKEMDYAPSFQMGHPIAFELAERLVELSPEGLNKVFFTNSGSESVDTALKMALCYHRANGQASRTRFIGREMGYH GVGFGGISVGGLSNNRKAFSGQLLQGVDHLPHTLDIQNAAFTRGLSHFGAEKAEVLEQLVTLHGAENIAAVIVEPMSGSA GVILPPQGYLKRLREITKKHGILLIFDEVITAFGRVGAAFASQRWGVIPDIITTAKAINNGAIPMGAVFVQDFIHDTCMQ GPNELIEFFHGYTYSGHPVAAAAALATLSIYENEQLFERSFELERYFEDAVHSLKGLPNVIDIRNTGLVAGIQFSPNAQG AGKRGYGVFEHCFRHGTLVRATGDIIAMSPPLIVDKREIDQMVNSLSDAINAVG >Mature_453_residues ADLPLNSSSDASHQSSTEHPSLEHFWMPFTANRQFKANPRLLTKAEGMYYTDIDGNKVLDATAGLWCCNAGHGRKEISEA VSKQIKEMDYAPSFQMGHPIAFELAERLVELSPEGLNKVFFTNSGSESVDTALKMALCYHRANGQASRTRFIGREMGYHG VGFGGISVGGLSNNRKAFSGQLLQGVDHLPHTLDIQNAAFTRGLSHFGAEKAEVLEQLVTLHGAENIAAVIVEPMSGSAG VILPPQGYLKRLREITKKHGILLIFDEVITAFGRVGAAFASQRWGVIPDIITTAKAINNGAIPMGAVFVQDFIHDTCMQG PNELIEFFHGYTYSGHPVAAAAALATLSIYENEQLFERSFELERYFEDAVHSLKGLPNVIDIRNTGLVAGIQFSPNAQGA GKRGYGVFEHCFRHGTLVRATGDIIAMSPPLIVDKREIDQMVNSLSDAINAVG
Specific function: Catalyzes transamination between a variety of omega- amino acids, mono and diamines, and pyruvate. Plays a pivotal role in the metabolism of the omega amino acids [H]
COG id: COG0161
COG function: function code H; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI4557809, Length=419, Percent_Identity=27.6849642004773, Blast_Score=139, Evalue=6e-33, Organism=Homo sapiens, GI13994255, Length=445, Percent_Identity=26.9662921348315, Blast_Score=133, Evalue=4e-31, Organism=Homo sapiens, GI37574042, Length=428, Percent_Identity=27.3364485981308, Blast_Score=122, Evalue=5e-28, Organism=Homo sapiens, GI226442705, Length=428, Percent_Identity=27.5700934579439, Blast_Score=120, Evalue=2e-27, Organism=Homo sapiens, GI284507298, Length=335, Percent_Identity=28.3582089552239, Blast_Score=118, Evalue=1e-26, Organism=Homo sapiens, GI226442709, Length=392, Percent_Identity=27.8061224489796, Blast_Score=112, Evalue=8e-25, Organism=Homo sapiens, GI24119277, Length=368, Percent_Identity=26.3586956521739, Blast_Score=105, Evalue=1e-22, Organism=Escherichia coli, GI145693181, Length=407, Percent_Identity=30.7125307125307, Blast_Score=177, Evalue=1e-45, Organism=Escherichia coli, GI1786991, Length=429, Percent_Identity=30.0699300699301, Blast_Score=174, Evalue=1e-44, Organism=Escherichia coli, GI1788044, Length=412, Percent_Identity=26.4563106796117, Blast_Score=140, Evalue=2e-34, Organism=Escherichia coli, GI1789759, Length=444, Percent_Identity=27.2522522522523, Blast_Score=139, Evalue=3e-34, Organism=Escherichia coli, GI1787560, Length=439, Percent_Identity=26.879271070615, Blast_Score=130, Evalue=2e-31, Organism=Escherichia coli, GI1789016, Length=358, Percent_Identity=29.0502793296089, Blast_Score=130, Evalue=2e-31, Organism=Escherichia coli, GI1786349, Length=372, Percent_Identity=28.7634408602151, Blast_Score=100, Evalue=3e-22, Organism=Caenorhabditis elegans, GI32564660, Length=451, Percent_Identity=29.9334811529933, Blast_Score=159, Evalue=4e-39, Organism=Caenorhabditis elegans, GI25144271, Length=415, Percent_Identity=27.710843373494, Blast_Score=142, Evalue=4e-34, Organism=Caenorhabditis elegans, GI71992977, Length=436, Percent_Identity=26.1467889908257, Blast_Score=123, Evalue=2e-28, Organism=Caenorhabditis elegans, GI25144274, Length=222, Percent_Identity=34.6846846846847, Blast_Score=122, Evalue=4e-28, Organism=Saccharomyces cerevisiae, GI6323470, Length=432, Percent_Identity=26.3888888888889, Blast_Score=158, Evalue=1e-39, Organism=Saccharomyces cerevisiae, GI6324386, Length=361, Percent_Identity=29.6398891966759, Blast_Score=131, Evalue=3e-31, Organism=Saccharomyces cerevisiae, GI6324432, Length=415, Percent_Identity=25.3012048192771, Blast_Score=114, Evalue=2e-26, Organism=Drosophila melanogaster, GI21357415, Length=418, Percent_Identity=27.511961722488, Blast_Score=145, Evalue=4e-35, Organism=Drosophila melanogaster, GI161085790, Length=480, Percent_Identity=27.5, Blast_Score=145, Evalue=4e-35, Organism=Drosophila melanogaster, GI28574759, Length=480, Percent_Identity=27.5, Blast_Score=141, Evalue=1e-33, Organism=Drosophila melanogaster, GI21356575, Length=463, Percent_Identity=27.2138228941685, Blast_Score=135, Evalue=4e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005814 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00202 Aminotran_3 [H]
EC number: =2.6.1.18 [H]
Molecular weight: Translated: 49378; Mature: 49246
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: PS00600 AA_TRANSFER_CLASS_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADLPLNSSSDASHQSSTEHPSLEHFWMPFTANRQFKANPRLLTKAEGMYYTDIDGNKVL CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEECCCEEEEECCCCEEE DATAGLWCCNAGHGRKEISEAVSKQIKEMDYAPSFQMGHPIAFELAERLVELSPEGLNKV ECCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEE FFTNSGSESVDTALKMALCYHRANGQASRTRFIGREMGYHGVGFGGISVGGLSNNRKAFS EEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHH GQLLQGVDHLPHTLDIQNAAFTRGLSHFGAEKAEVLEQLVTLHGAENIAAVIVEPMSGSA HHHHHHHHHCCCEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCC GVILPPQGYLKRLREITKKHGILLIFDEVITAFGRVGAAFASQRWGVIPDIITTAKAINN CEEECCHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC GAIPMGAVFVQDFIHDTCMQGPNELIEFFHGYTYSGHPVAAAAALATLSIYENEQLFERS CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHH FELERYFEDAVHSLKGLPNVIDIRNTGLVAGIQFSPNAQGAGKRGYGVFEHCFRHGTLVR HHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHHCCCEEE ATGDIIAMSPPLIVDKREIDQMVNSLSDAINAVG ECCCEEEECCCCEECHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure ADLPLNSSSDASHQSSTEHPSLEHFWMPFTANRQFKANPRLLTKAEGMYYTDIDGNKVL CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEECCCEEEEECCCCEEE DATAGLWCCNAGHGRKEISEAVSKQIKEMDYAPSFQMGHPIAFELAERLVELSPEGLNKV ECCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEE FFTNSGSESVDTALKMALCYHRANGQASRTRFIGREMGYHGVGFGGISVGGLSNNRKAFS EEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHH GQLLQGVDHLPHTLDIQNAAFTRGLSHFGAEKAEVLEQLVTLHGAENIAAVIVEPMSGSA HHHHHHHHHCCCEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCC GVILPPQGYLKRLREITKKHGILLIFDEVITAFGRVGAAFASQRWGVIPDIITTAKAINN CEEECCHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC GAIPMGAVFVQDFIHDTCMQGPNELIEFFHGYTYSGHPVAAAAALATLSIYENEQLFERS CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHH FELERYFEDAVHSLKGLPNVIDIRNTGLVAGIQFSPNAQGAGKRGYGVFEHCFRHGTLVR HHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHHCCCEEE ATGDIIAMSPPLIVDKREIDQMVNSLSDAINAVG ECCCEEEECCCCEECHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1618757; 6822556; 2500426 [H]