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The map label for this gene is rbsR [H]

Identifier: 160874290

GI number: 160874290

Start: 1383960

End: 1384976

Strand: Reverse

Name: rbsR [H]

Synonym: Sbal195_1170

Alternate gene names: 160874290

Gene position: 1384976-1383960 (Counterclockwise)

Preceding gene: 160874294

Following gene: 160874287

Centisome position: 25.9

GC content: 41.59

Gene sequence:

>1017_bases
ATGAAAGTCACTATCAACGACGTAGCTAAATATGCTGGAGTGTCTATCAAGACAGTATCCCGTGTCACCAATAACGAACC
TTCAGTAAAGCAGGCCACAGTTGACAAAGTGAACGAGGCGATAAAAGCGCTTAACTACCAACCGAATTTAGCGGCGAGAA
ACCTCGCGGGTACTAAATCCTATGCTATTGGTTTTATTTACGATAATCCAAACGCTTACTACATTATTGATATGCAAAAT
GGGATCTTGGCAGCCTGTAAAGACAAGGGCTATGAACTTGTCATCCATCCTTGCAATGCCAAATCAGAGACCATTTGTGA
TGAGCTTACTGCACTAGTCAAATATTCTAGGCTAGCGGGATTAGTACTGACGCCTCCCTTGTCAGAAGATCCGAAAGTAC
TCAAAGCGCTTACTGAGATTGATGCTAACTATGTGCGCATTATTGCAGGTGAAAAGGACAACGATCAGAATGGATTGACT
ATTTTAGTCAACGATAAATTTGGTGCAGTTGAAATCACCCAGCATCTGATTGACTTAGGCCACAAGCATATTGCGTTTTT
AAGTGGGGATTTACACCATGAATCCACTAAAGAACGGTTACTTGGTTTTAAACAAGCATTAACAATAAATGGCCTGAAAC
TGAATGAAAACTACATAATTGAAGGGAAGTACTCATTTGAGTCTGGTGTTGACGGTGCGAATAAGCTTATTAAACTAAAA
CATCGTCCGACTGCGATTGTGGCTTGTAATGATGAAATTGCCGCTGGAGCACTTTTTGCTGCTCGTTTAGCGGGTTTAGA
TATCCCAGTAGACTTATCGATTGTCGGTTTCGAAGATAGCCCATTCTCACGTCAAACCTGGCCTAAACTCACCACAGTAC
ATCAGCCAAACGCAGAAATAGCGCAAGTCGCAACAGAATTATTAATAGCAAAACGTCGCGAGCAGGATGCGATATATTCT
AAGACCTTTACACCTGAACCTATCATTCGTGACTCGTCAGCAATTCCTAAACAATAA

Upstream 100 bases:

>100_bases
AAATACTGATAAAAATGTAAGCTTGTAAATTGCTGGTAAAGAATTTACGTTCATAGAACAGTTAACCCTTCGCGACCTTA
GACAAAGAGTTTTTACATCA

Downstream 100 bases:

>100_bases
AAAAAGAGAGCATATTTGCTCTCTTTTTTGCCCTACATTACATAGAAATCAATGTAATTTGAGCTTTGGACGCTGCCACC
TCAATAACTTTTGTGCCACT

Product: LacI family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MKVTINDVAKYAGVSIKTVSRVTNNEPSVKQATVDKVNEAIKALNYQPNLAARNLAGTKSYAIGFIYDNPNAYYIIDMQN
GILAACKDKGYELVIHPCNAKSETICDELTALVKYSRLAGLVLTPPLSEDPKVLKALTEIDANYVRIIAGEKDNDQNGLT
ILVNDKFGAVEITQHLIDLGHKHIAFLSGDLHHESTKERLLGFKQALTINGLKLNENYIIEGKYSFESGVDGANKLIKLK
HRPTAIVACNDEIAAGALFAARLAGLDIPVDLSIVGFEDSPFSRQTWPKLTTVHQPNAEIAQVATELLIAKRREQDAIYS
KTFTPEPIIRDSSAIPKQ

Sequences:

>Translated_338_residues
MKVTINDVAKYAGVSIKTVSRVTNNEPSVKQATVDKVNEAIKALNYQPNLAARNLAGTKSYAIGFIYDNPNAYYIIDMQN
GILAACKDKGYELVIHPCNAKSETICDELTALVKYSRLAGLVLTPPLSEDPKVLKALTEIDANYVRIIAGEKDNDQNGLT
ILVNDKFGAVEITQHLIDLGHKHIAFLSGDLHHESTKERLLGFKQALTINGLKLNENYIIEGKYSFESGVDGANKLIKLK
HRPTAIVACNDEIAAGALFAARLAGLDIPVDLSIVGFEDSPFSRQTWPKLTTVHQPNAEIAQVATELLIAKRREQDAIYS
KTFTPEPIIRDSSAIPKQ
>Mature_338_residues
MKVTINDVAKYAGVSIKTVSRVTNNEPSVKQATVDKVNEAIKALNYQPNLAARNLAGTKSYAIGFIYDNPNAYYIIDMQN
GILAACKDKGYELVIHPCNAKSETICDELTALVKYSRLAGLVLTPPLSEDPKVLKALTEIDANYVRIIAGEKDNDQNGLT
ILVNDKFGAVEITQHLIDLGHKHIAFLSGDLHHESTKERLLGFKQALTINGLKLNENYIIEGKYSFESGVDGANKLIKLK
HRPTAIVACNDEIAAGALFAARLAGLDIPVDLSIVGFEDSPFSRQTWPKLTTVHQPNAEIAQVATELLIAKRREQDAIYS
KTFTPEPIIRDSSAIPKQ

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=333, Percent_Identity=29.7297297297297, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1787948, Length=326, Percent_Identity=30.6748466257669, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1789068, Length=353, Percent_Identity=31.728045325779, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1789202, Length=340, Percent_Identity=28.2352941176471, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1786540, Length=336, Percent_Identity=30.3571428571429, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1790369, Length=338, Percent_Identity=30.1775147928994, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1788474, Length=336, Percent_Identity=32.1428571428571, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1787580, Length=319, Percent_Identity=27.2727272727273, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI48994940, Length=311, Percent_Identity=27.9742765273312, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1787906, Length=267, Percent_Identity=28.4644194756554, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1789456, Length=331, Percent_Identity=26.8882175226586, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790715, Length=320, Percent_Identity=22.8125, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1790689, Length=318, Percent_Identity=25.7861635220126, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 37054; Mature: 37054

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVTINDVAKYAGVSIKTVSRVTNNEPSVKQATVDKVNEAIKALNYQPNLAARNLAGTKS
CEEEHHHHHHHHCCEEEEHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCC
YAIGFIYDNPNAYYIIDMQNGILAACKDKGYELVIHPCNAKSETICDELTALVKYSRLAG
EEEEEEEECCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCC
LVLTPPLSEDPKVLKALTEIDANYVRIIAGEKDNDQNGLTILVNDKFGAVEITQHLIDLG
EEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHCC
HKHIAFLSGDLHHESTKERLLGFKQALTINGLKLNENYIIEGKYSFESGVDGANKLIKLK
CCEEEEEECCCCCHHHHHHHHHHHHHEEECCEEECCCEEEEEEECCCCCCCCCCCEEEEE
HRPTAIVACNDEIAAGALFAARLAGLDIPVDLSIVGFEDSPFSRQTWPKLTTVHQPNAEI
CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCHHH
AQVATELLIAKRREQDAIYSKTFTPEPIIRDSSAIPKQ
HHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKVTINDVAKYAGVSIKTVSRVTNNEPSVKQATVDKVNEAIKALNYQPNLAARNLAGTKS
CEEEHHHHHHHHCCEEEEHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCC
YAIGFIYDNPNAYYIIDMQNGILAACKDKGYELVIHPCNAKSETICDELTALVKYSRLAG
EEEEEEEECCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCC
LVLTPPLSEDPKVLKALTEIDANYVRIIAGEKDNDQNGLTILVNDKFGAVEITQHLIDLG
EEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHCC
HKHIAFLSGDLHHESTKERLLGFKQALTINGLKLNENYIIEGKYSFESGVDGANKLIKLK
CCEEEEEECCCCCHHHHHHHHHHHHHEEECCEEECCCEEEEEEECCCCCCCCCCCEEEEE
HRPTAIVACNDEIAAGALFAARLAGLDIPVDLSIVGFEDSPFSRQTWPKLTTVHQPNAEI
CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCHHH
AQVATELLIAKRREQDAIYSKTFTPEPIIRDSSAIPKQ
HHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]