Click here to switch to the map view.

The map label for this gene is ygiP [C]

Identifier: 160874119

GI number: 160874119

Start: 1188018

End: 1188965

Strand: Reverse

Name: ygiP [C]

Synonym: Sbal195_0999

Alternate gene names: 160874119

Gene position: 1188965-1188018 (Counterclockwise)

Preceding gene: 160874121

Following gene: 160874118

Centisome position: 22.23

GC content: 49.89

Gene sequence:

>948_bases
GTGATACAACATAGAGCTAGCCAGATGGTGATATTTCACACACTGGTGACCAGTGGCAGTTTTACCCAAGCGGCAGCTAA
GTTAAAAACCTCGACCTCCTATGTCAGCAAGCAAATTGGCGCGTTGGAAGCTGAGCTGAACTTGTTGTTAGTGCAGCGCA
CCACGCGCACCTTAGTGTTAACTGACGCTGGCCAACAGTTTGCCCATTACTGTGAGCAAGTGTTTGAAGCGACGCAAAAT
GCCGATGCGATTATGCTGGATGCCCGCGACGACATTAGCGGGACGATTCGTCTCGGTTCCTCCCAATCCTTTGGCACCTT
ACACATCATCCCCGCGCTGGAAGTGTTGCAGGAAAAGTATCCCGAATTACGATTTGAGCTGAGCCTGTTCGACCATAAGG
CCGACATGCTAGAAGAAGGTCTCGATCTGTGGATCACTAACCATGAACAGCTGAACGAAGGCTATATCGCCCAGCATCTC
GCCGAGACTAACTTTGTGGTGGTCGCCTCCCCCGATTATTTGCTCAAGCACGGCGTGCCACACCATCCACGGGAGTTAGC
TCAGCACAATTGTGTTATCTATCAAAGTAAAAGCCGTAATTATGATCGCTGGAGTTTTGCTAAGGATGACCATGAGCAAA
CCGTCAATGTGGCGGGGAATTACCGTGTCGACTTAGCCGAAGCCGTGCGCAATGCTGTGATTGCAGGAAGAGGTATAGGC
TATGTGGCCACGTATTTACTCAGTGATGAGTTTCAAAGCGGCAAGCTCATCCAACTCTTACCCGATTGGAAACCGCTGCA
ACAGATGCCCGTCTATGTGGTTTACCCAAGGCGGCGCCATTTACCGACTAAGTACAAGGTGATTATCGAATGTTTAAAGT
CCCATATCGGCCACCCGCCCTACTGGGACAAAAAGCTCAAACCTTGGTTAGGTAAGACAGTCTCTTAA

Upstream 100 bases:

>100_bases
TTTGTAAGCTTGGTTTGAAATAACACACGATTGGCACAAACGGCTGTCGGTTAGGGCTAGGCTAGCTTAAAATAGCGATT
TAGATTCTAGAGGGCTTGGC

Downstream 100 bases:

>100_bases
GCAACAGTCATTTAAGCAACAGTCATTTAAGCAACAGTCACTTAAGTTGCATTTCAAACCAGCACTGACTACGACACCAG
CCTAAACTCGTCTGTGGCGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MIQHRASQMVIFHTLVTSGSFTQAAAKLKTSTSYVSKQIGALEAELNLLLVQRTTRTLVLTDAGQQFAHYCEQVFEATQN
ADAIMLDARDDISGTIRLGSSQSFGTLHIIPALEVLQEKYPELRFELSLFDHKADMLEEGLDLWITNHEQLNEGYIAQHL
AETNFVVVASPDYLLKHGVPHHPRELAQHNCVIYQSKSRNYDRWSFAKDDHEQTVNVAGNYRVDLAEAVRNAVIAGRGIG
YVATYLLSDEFQSGKLIQLLPDWKPLQQMPVYVVYPRRRHLPTKYKVIIECLKSHIGHPPYWDKKLKPWLGKTVS

Sequences:

>Translated_315_residues
MIQHRASQMVIFHTLVTSGSFTQAAAKLKTSTSYVSKQIGALEAELNLLLVQRTTRTLVLTDAGQQFAHYCEQVFEATQN
ADAIMLDARDDISGTIRLGSSQSFGTLHIIPALEVLQEKYPELRFELSLFDHKADMLEEGLDLWITNHEQLNEGYIAQHL
AETNFVVVASPDYLLKHGVPHHPRELAQHNCVIYQSKSRNYDRWSFAKDDHEQTVNVAGNYRVDLAEAVRNAVIAGRGIG
YVATYLLSDEFQSGKLIQLLPDWKPLQQMPVYVVYPRRRHLPTKYKVIIECLKSHIGHPPYWDKKLKPWLGKTVS
>Mature_315_residues
MIQHRASQMVIFHTLVTSGSFTQAAAKLKTSTSYVSKQIGALEAELNLLLVQRTTRTLVLTDAGQQFAHYCEQVFEATQN
ADAIMLDARDDISGTIRLGSSQSFGTLHIIPALEVLQEKYPELRFELSLFDHKADMLEEGLDLWITNHEQLNEGYIAQHL
AETNFVVVASPDYLLKHGVPHHPRELAQHNCVIYQSKSRNYDRWSFAKDDHEQTVNVAGNYRVDLAEAVRNAVIAGRGIG
YVATYLLSDEFQSGKLIQLLPDWKPLQQMPVYVVYPRRRHLPTKYKVIIECLKSHIGHPPYWDKKLKPWLGKTVS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789440, Length=298, Percent_Identity=28.8590604026846, Blast_Score=151, Evalue=6e-38,
Organism=Escherichia coli, GI1786401, Length=298, Percent_Identity=25.8389261744966, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1787128, Length=294, Percent_Identity=27.891156462585, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI87081978, Length=287, Percent_Identity=27.1777003484321, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=27.0547945205479, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787589, Length=296, Percent_Identity=26.0135135135135, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI145693193, Length=285, Percent_Identity=28.0701754385965, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789173, Length=251, Percent_Identity=25.0996015936255, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787806, Length=252, Percent_Identity=26.1904761904762, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1790011, Length=322, Percent_Identity=20.4968944099379, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788481, Length=286, Percent_Identity=25.1748251748252, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786448, Length=282, Percent_Identity=25.531914893617, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788706, Length=262, Percent_Identity=23.2824427480916, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35823; Mature: 35823

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQHRASQMVIFHTLVTSGSFTQAAAKLKTSTSYVSKQIGALEAELNLLLVQRTTRTLVL
CCCCHHHHEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCEEEEE
TDAGQQFAHYCEQVFEATQNADAIMLDARDDISGTIRLGSSQSFGTLHIIPALEVLQEKY
ECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCEEEEHHHHHHHHHHC
PELRFELSLFDHKADMLEEGLDLWITNHEQLNEGYIAQHLAETNFVVVASPDYLLKHGVP
CCCEEEEEHHHHHHHHHHCCCEEEEECHHHHCCCHHHHHHCCCCEEEEECCCHHHHCCCC
HHPRELAQHNCVIYQSKSRNYDRWSFAKDDHEQTVNVAGNYRVDLAEAVRNAVIAGRGIG
CCHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCEEEEHHHHHHHHHHCCCCHH
YVATYLLSDEFQSGKLIQLLPDWKPLQQMPVYVVYPRRRHLPTKYKVIIECLKSHIGHPP
HHHHHHHHCCCCCCCEEEECCCCCCHHHCCEEEECCCHHCCCHHHHHHHHHHHHHCCCCC
YWDKKLKPWLGKTVS
CCCCCCCCCCCCCCC
>Mature Secondary Structure
MIQHRASQMVIFHTLVTSGSFTQAAAKLKTSTSYVSKQIGALEAELNLLLVQRTTRTLVL
CCCCHHHHEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCEEEEE
TDAGQQFAHYCEQVFEATQNADAIMLDARDDISGTIRLGSSQSFGTLHIIPALEVLQEKY
ECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCEEEEHHHHHHHHHHC
PELRFELSLFDHKADMLEEGLDLWITNHEQLNEGYIAQHLAETNFVVVASPDYLLKHGVP
CCCEEEEEHHHHHHHHHHCCCEEEEECHHHHCCCHHHHHHCCCCEEEEECCCHHHHCCCC
HHPRELAQHNCVIYQSKSRNYDRWSFAKDDHEQTVNVAGNYRVDLAEAVRNAVIAGRGIG
CCHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCEEEEHHHHHHHHHHCCCCHH
YVATYLLSDEFQSGKLIQLLPDWKPLQQMPVYVVYPRRRHLPTKYKVIIECLKSHIGHPP
HHHHHHHHCCCCCCCEEEECCCCCCHHHCCEEEECCCHHCCCHHHHHHHHHHHHHCCCCC
YWDKKLKPWLGKTVS
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]