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The map label for this gene is ccmF [H]

Identifier: 160873360

GI number: 160873360

Start: 269161

End: 271140

Strand: Direct

Name: ccmF [H]

Synonym: Sbal195_0234

Alternate gene names: 160873360

Gene position: 269161-271140 (Clockwise)

Preceding gene: 160873358

Following gene: 160873361

Centisome position: 5.03

GC content: 47.98

Gene sequence:

>1980_bases
ATGATCCCAGAACTTGGACACTTTGCGCTGATAATAGGGGTGGCTTTTGCCTTCTTATTAATCAGCGTCCCCCTAATAGG
TGTTGCCCGTAAAGATCAATACCTTGTTAGGTATGCTTGGCCGTTAACGTACGGAATGTTCTTTTTTATCACTGTATCAG
TTATCGTGCTGGCCTATAGCTTTGCCGTCGACGATTTCTCAGTCGCCTATGTGGCACATCACTCTAATTCTCAGTTACCT
ATCTTCTTTAAGATTTCGGCCGTATGGGGCGGTCATGAAGGGTCACTGTTGTTCTGGGTGTTTGCTTTATCGACTTGGGC
TGCAGCGGTTGCCTTATTTAGTAAAGGTTTAGAGGAAGTGTTTACTGCGCGTGTACTGGCAGTATTAGCACTGATCGTGA
TTGGCTTTAGCTTATTCATGCTTCTCACCTCTAGCCCATTCGAACGTTTGTTCCCGATACCTGCCGAAGGCCGTGACTTG
AACCCAATGCTGCAGGATGTGGGATTAATCTTCCACCCACCTATGCTGTATTTAGGTTATGTGGGCTTCTCAGTGAGCTT
TGCATTTGCGATTGCCGCGCTGATGAGCGGTCGTCTCGATTCTGCATGGGCTCGTTGGACGCGTCCTTGGACCTTAGCCG
CTTGGATCTTCCTAACTGGAGGTATCGCGCTAGGTTCTTGGTGGGCATATTATGAATTAGGCTGGGGCGGTTGGTGGTTC
TGGGATCCTGTTGAGAACGCCTCTTTCATGCCTTGGTTAGTGGGTACTGCGCTCGTTCACTCTTTGATTGTGACCGAGAA
ACGCGGCGCTTTCCGTAACTGGACCGTATTACTGTCTATCTTCGCTTTCTCTTTAAGTTTGCTTGGTACCTTTATTGTTC
GCTCAGGCGTATTAACCTCAGTGCATTCATTCGCAGCCGATCCAAGCCGCGGTATGTTTATTCTGTTGTTACTTGGCTTA
GCGATTGGCGGTTCATTAACACTGTTTGCCTTCCGCGCCAGTGAAATGAGCAGTCCAGCCCGTTTCGAGCTGAAGTCTAA
AGAAACCATGCTACTGGTCTGTAACGTGTTACTGACCGTTGCCGCAGGTACTGTGCTATTGGGTACACTCTATCCATTGC
TCATCGATGCACTCGGCATGGGTAAAATTTCTGTAGGACCTCCATACTTCAACGCTGTGTTTGTGCCTATCGTATTAGTC
TTATTTGGCTTTATGGGTATTGGTCCAATTATCCGTTGGAAAAAATCGAAAGCAGGCGAGCTTAGGCGTCAGCTATTGAT
CCCTGCAATGGTTGCTGCGGCTATCGGTATTGTGACGCCATTTATCGTTGATGGTGTATTCAACATTTGGGTTGCCTTTG
GTATCGCGGCGGCTTCTTGGATTATCCTAGCGACAGCAAGAGCGGCCTATAACATGGTCAAGTCGAAAGAAGGTGATATC
AGCATCAGCCGTATGGGCCGTAGTCAGCTGGGCATGATCTTCGCGCATCTTGGTATTGCTGTGTCTGTGATTGGTGCCAC
TATGGTGTCGAATTACTCGATTGAGAAAAGTGTTCGCATGGGACCTGGTATTAGCCAAGAACTTGCGGGTTACACCTTTA
AGTATCTCGAGACCAAAAACGTAGTGGGTCCTAACTACACTGCAATGCAGGGACAGATAGAAGTCTACAAAGGTGATGAG
CTGCTGACATTACTCAAGCCCGATCGTCGTCAATATAATGTGCGTACTATGGACATGACAGAAGCGGGTATCGACTGGGG
TCTATTCCGTGATTTGTATGTGACCATGGGCGATCCAATTACCAGCACTGAATTTGCGGTTCGTTTGAACTACAAGCCGT
TCGTGCGTTGGTTATGGTTTGGGGCAATTTTCATGATGATTGGTGGATTCTTCGCGGCATCGGATAAACGTTACCGTGCG
AAAGTCACTGCAGCCATCGCGCCTTCGGCCGAAAAGGCAAAATTGGCAACGGCTCAATAA

Upstream 100 bases:

>100_bases
CTAAAATGAGCAAAATTTCGTGCATTTGCGTGAATAACATGTTGTGCGTTGAGATAGAGTCTTTCTAAATCAACATATTA
TTGAAGACTGAGGAAAACCC

Downstream 100 bases:

>100_bases
TTGGGGAATGTATGAAGAAGTTGGTTCTGTTTATCCCATTGGTCATATTTCTCGCCATGGGGGTGTTTCTATATAAAGGC
TTATTTCTGAATCCGCAGCA

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 659; Mature: 659

Protein sequence:

>659_residues
MIPELGHFALIIGVAFAFLLISVPLIGVARKDQYLVRYAWPLTYGMFFFITVSVIVLAYSFAVDDFSVAYVAHHSNSQLP
IFFKISAVWGGHEGSLLFWVFALSTWAAAVALFSKGLEEVFTARVLAVLALIVIGFSLFMLLTSSPFERLFPIPAEGRDL
NPMLQDVGLIFHPPMLYLGYVGFSVSFAFAIAALMSGRLDSAWARWTRPWTLAAWIFLTGGIALGSWWAYYELGWGGWWF
WDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTSVHSFAADPSRGMFILLLLGL
AIGGSLTLFAFRASEMSSPARFELKSKETMLLVCNVLLTVAAGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLV
LFGFMGIGPIIRWKKSKAGELRRQLLIPAMVAAAIGIVTPFIVDGVFNIWVAFGIAAASWIILATARAAYNMVKSKEGDI
SISRMGRSQLGMIFAHLGIAVSVIGATMVSNYSIEKSVRMGPGISQELAGYTFKYLETKNVVGPNYTAMQGQIEVYKGDE
LLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPITSTEFAVRLNYKPFVRWLWFGAIFMMIGGFFAASDKRYRA
KVTAAIAPSAEKAKLATAQ

Sequences:

>Translated_659_residues
MIPELGHFALIIGVAFAFLLISVPLIGVARKDQYLVRYAWPLTYGMFFFITVSVIVLAYSFAVDDFSVAYVAHHSNSQLP
IFFKISAVWGGHEGSLLFWVFALSTWAAAVALFSKGLEEVFTARVLAVLALIVIGFSLFMLLTSSPFERLFPIPAEGRDL
NPMLQDVGLIFHPPMLYLGYVGFSVSFAFAIAALMSGRLDSAWARWTRPWTLAAWIFLTGGIALGSWWAYYELGWGGWWF
WDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTSVHSFAADPSRGMFILLLLGL
AIGGSLTLFAFRASEMSSPARFELKSKETMLLVCNVLLTVAAGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLV
LFGFMGIGPIIRWKKSKAGELRRQLLIPAMVAAAIGIVTPFIVDGVFNIWVAFGIAAASWIILATARAAYNMVKSKEGDI
SISRMGRSQLGMIFAHLGIAVSVIGATMVSNYSIEKSVRMGPGISQELAGYTFKYLETKNVVGPNYTAMQGQIEVYKGDE
LLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPITSTEFAVRLNYKPFVRWLWFGAIFMMIGGFFAASDKRYRA
KVTAAIAPSAEKAKLATAQ
>Mature_659_residues
MIPELGHFALIIGVAFAFLLISVPLIGVARKDQYLVRYAWPLTYGMFFFITVSVIVLAYSFAVDDFSVAYVAHHSNSQLP
IFFKISAVWGGHEGSLLFWVFALSTWAAAVALFSKGLEEVFTARVLAVLALIVIGFSLFMLLTSSPFERLFPIPAEGRDL
NPMLQDVGLIFHPPMLYLGYVGFSVSFAFAIAALMSGRLDSAWARWTRPWTLAAWIFLTGGIALGSWWAYYELGWGGWWF
WDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTSVHSFAADPSRGMFILLLLGL
AIGGSLTLFAFRASEMSSPARFELKSKETMLLVCNVLLTVAAGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLV
LFGFMGIGPIIRWKKSKAGELRRQLLIPAMVAAAIGIVTPFIVDGVFNIWVAFGIAAASWIILATARAAYNMVKSKEGDI
SISRMGRSQLGMIFAHLGIAVSVIGATMVSNYSIEKSVRMGPGISQELAGYTFKYLETKNVVGPNYTAMQGQIEVYKGDE
LLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPITSTEFAVRLNYKPFVRWLWFGAIFMMIGGFFAASDKRYRA
KVTAAIAPSAEKAKLATAQ

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=653, Percent_Identity=49.6171516079632, Blast_Score=603, Evalue=1e-173,
Organism=Escherichia coli, GI1790511, Length=591, Percent_Identity=38.2402707275804, Blast_Score=333, Evalue=3e-92,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 72545; Mature: 72545

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPELGHFALIIGVAFAFLLISVPLIGVARKDQYLVRYAWPLTYGMFFFITVSVIVLAYS
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHH
FAVDDFSVAYVAHHSNSQLPIFFKISAVWGGHEGSLLFWVFALSTWAAAVALFSKGLEEV
HHCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FTARVLAVLALIVIGFSLFMLLTSSPFERLFPIPAEGRDLNPMLQDVGLIFHPPMLYLGY
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHCCHHCCCHHHHHHH
VGFSVSFAFAIAALMSGRLDSAWARWTRPWTLAAWIFLTGGIALGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHCCHHHCCEEEEEEECCCCEEE
WDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTS
ECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHSFAADPSRGMFILLLLGLAIGGSLTLFAFRASEMSSPARFELKSKETMLLVCNVLLTV
HHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHH
AAGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFGFMGIGPIIRWKKSKAGE
HHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCHHHEECCCHHHH
LRRQLLIPAMVAAAIGIVTPFIVDGVFNIWVAFGIAAASWIILATARAAYNMVKSKEGDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
SISRMGRSQLGMIFAHLGIAVSVIGATMVSNYSIEKSVRMGPGISQELAGYTFKYLETKN
EHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHCCCEEEEEEECC
VVGPNYTAMQGQIEVYKGDELLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPI
CCCCCCEEECCEEEEEECCCEEEEECCCCCCCCEEEEECHHCCCCHHHHHHHHHCCCCCC
TSTEFAVRLNYKPFVRWLWFGAIFMMIGGFFAASDKRYRAKVTAAIAPSAEKAKLATAQ
CCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEEEEEECCCCHHCCCCCCC
>Mature Secondary Structure
MIPELGHFALIIGVAFAFLLISVPLIGVARKDQYLVRYAWPLTYGMFFFITVSVIVLAYS
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHH
FAVDDFSVAYVAHHSNSQLPIFFKISAVWGGHEGSLLFWVFALSTWAAAVALFSKGLEEV
HHCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FTARVLAVLALIVIGFSLFMLLTSSPFERLFPIPAEGRDLNPMLQDVGLIFHPPMLYLGY
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHCCHHCCCHHHHHHH
VGFSVSFAFAIAALMSGRLDSAWARWTRPWTLAAWIFLTGGIALGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHCCHHHCCEEEEEEECCCCEEE
WDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTS
ECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHSFAADPSRGMFILLLLGLAIGGSLTLFAFRASEMSSPARFELKSKETMLLVCNVLLTV
HHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHH
AAGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFGFMGIGPIIRWKKSKAGE
HHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCHHHEECCCHHHH
LRRQLLIPAMVAAAIGIVTPFIVDGVFNIWVAFGIAAASWIILATARAAYNMVKSKEGDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
SISRMGRSQLGMIFAHLGIAVSVIGATMVSNYSIEKSVRMGPGISQELAGYTFKYLETKN
EHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHCCCEEEEEEECC
VVGPNYTAMQGQIEVYKGDELLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPI
CCCCCCEEECCEEEEEECCCEEEEECCCCCCCCEEEEECHHCCCCHHHHHHHHHCCCCCC
TSTEFAVRLNYKPFVRWLWFGAIFMMIGGFFAASDKRYRAKVTAAIAPSAEKAKLATAQ
CCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEEEEEECCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]