Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
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Accession | NC_009972 |
Length | 6,346,587 |
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The map label for this gene is 159899918
Identifier: 159899918
GI number: 159899918
Start: 4284390
End: 4284992
Strand: Direct
Name: 159899918
Synonym: Haur_3401
Alternate gene names: NA
Gene position: 4284390-4284992 (Clockwise)
Preceding gene: 159899917
Following gene: 159899919
Centisome position: 67.51
GC content: 50.91
Gene sequence:
>603_bases ATGTCAGATTTCGTCTACGATTTACGGCGCGTTAGCCATATTACGGCAGCAGCAGTCGGTCAACCAGGCCAACGCACCTT TTATTTACAAGCTCAAAAAGGTAGCGATCTGGTTTCATTAATCACCGAAAAAGAGCTGGTTCGGGCACTCTGCTTGCGCA TTGACGATATTTTGGAAGAGTTGGATAAGCGTGGGGTTGCTCGACCTGATGCTTCCGAGGAGCCAACACCCGCCGAATTG CTGCTGCGCCCCCCATTAAATCCCTTCTTTCGCATCGCCCAAATGTCGTTGGCCTACGACCCAACCAGCGATTTGTTGGT GATCGAGGTCGAAGAATTTCAATTGGCCGATGATGAGGACGATGAGGAAATCGACCCAATTTTGCAACAAAATGCTGAGG CCGAGGAAGGCAAAAACGATCCACGACGAGTGCGGATTTCGGCAACGCGGGCGCAAATGCAGGCACTCAGTCGCAACGCC ATGGACATTATCACCACTGGCGGGCGGCCAATTTGCCCTCAATGTTTGCAGCCAATGGAAGATGAAGGCCATCTCTGCGT CAAGAAAAATGGCCACGGCAATAAAAAAGCCTCGGAAATGTAA
Upstream 100 bases:
>100_bases GCCAAACCTGCTTCAAGCGATTCGAACGAGCTTACGCCGGAAACTGAACGGCCTGTGGGCTAAACTAAACTCTCTCTTGC ACTGAATTGAAAGGTTCGGC
Downstream 100 bases:
>100_bases CATAAGGCTATAGACTATAGGCGTTTGATTCATCCAGAACTATGGCGTTGCGGTTTAACGCAGAGGCGCGGAGAATGCAG AGCAATGGGCTATTGGAACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 200; Mature: 199
Protein sequence:
>200_residues MSDFVYDLRRVSHITAAAVGQPGQRTFYLQAQKGSDLVSLITEKELVRALCLRIDDILEELDKRGVARPDASEEPTPAEL LLRPPLNPFFRIAQMSLAYDPTSDLLVIEVEEFQLADDEDDEEIDPILQQNAEAEEGKNDPRRVRISATRAQMQALSRNA MDIITTGGRPICPQCLQPMEDEGHLCVKKNGHGNKKASEM
Sequences:
>Translated_200_residues MSDFVYDLRRVSHITAAAVGQPGQRTFYLQAQKGSDLVSLITEKELVRALCLRIDDILEELDKRGVARPDASEEPTPAEL LLRPPLNPFFRIAQMSLAYDPTSDLLVIEVEEFQLADDEDDEEIDPILQQNAEAEEGKNDPRRVRISATRAQMQALSRNA MDIITTGGRPICPQCLQPMEDEGHLCVKKNGHGNKKASEM >Mature_199_residues SDFVYDLRRVSHITAAAVGQPGQRTFYLQAQKGSDLVSLITEKELVRALCLRIDDILEELDKRGVARPDASEEPTPAELL LRPPLNPFFRIAQMSLAYDPTSDLLVIEVEEFQLADDEDDEEIDPILQQNAEAEEGKNDPRRVRISATRAQMQALSRNAM DIITTGGRPICPQCLQPMEDEGHLCVKKNGHGNKKASEM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22373; Mature: 22241
Theoretical pI: Translated: 4.43; Mature: 4.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDFVYDLRRVSHITAAAVGQPGQRTFYLQAQKGSDLVSLITEKELVRALCLRIDDILEE CCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH LDKRGVARPDASEEPTPAELLLRPPLNPFFRIAQMSLAYDPTSDLLVIEVEEFQLADDED HHHCCCCCCCCCCCCCHHHEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEECEECCCCCC DEEIDPILQQNAEAEEGKNDPRRVRISATRAQMQALSRNAMDIITTGGRPICPQCLQPME CHHHHHHHHCCCCHHCCCCCCCEEEEHHHHHHHHHHHCCCCEEEECCCCCCCHHHCCCCC DEGHLCVKKNGHGNKKASEM CCCCEEEEECCCCCCCCCCC >Mature Secondary Structure SDFVYDLRRVSHITAAAVGQPGQRTFYLQAQKGSDLVSLITEKELVRALCLRIDDILEE CHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH LDKRGVARPDASEEPTPAELLLRPPLNPFFRIAQMSLAYDPTSDLLVIEVEEFQLADDED HHHCCCCCCCCCCCCCHHHEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEECEECCCCCC DEEIDPILQQNAEAEEGKNDPRRVRISATRAQMQALSRNAMDIITTGGRPICPQCLQPME CHHHHHHHHCCCCHHCCCCCCCEEEEHHHHHHHHHHHCCCCEEEECCCCCCCHHHCCCCC DEGHLCVKKNGHGNKKASEM CCCCEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA