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The map label for this gene is ydcM [C]

Identifier: 159899913

GI number: 159899913

Start: 4278197

End: 4279354

Strand: Direct

Name: ydcM [C]

Synonym: Haur_3396

Alternate gene names: 159899913

Gene position: 4278197-4279354 (Clockwise)

Preceding gene: 159899912

Following gene: 159899917

Centisome position: 67.41

GC content: 53.02

Gene sequence:

>1158_bases
ATGCGAATGCTGACCCGTTGTTACAAATACCGTCTGCAACTCACACCGACCCACGTTGAAACCTTGGTACAGTGGGCGGG
TTGTCGGCGCTTCGTCTGGAATTGGGCGCTGCACTGCAAGCAAACCCACTACCAAACAACGGGTCAACGGCTGAGCTATC
AACGGCTTGCGGCGGCATTGGTTGATCTGAAACGTCAGCCCAAAACGGCATTTTTGCGTGATTGCCACTCACAACCGTTG
CAACAAACCTTGATGGATTTGGAAACGGCCTTCAGCAACTTTTTTGCCAAACGCGCCAAGTACCCGCGATTCAAATCACG
CAAAATCACGCCGCACAGCCTACGCTTCCCGCAAGGTGTGATCGTGGTTGATGAACATACCATCAGCGTGCCAAAAATCG
GGCTGATACGGGCGATCATTCATCGCCCCTTGCAAGGCATAGCGAAGAGTGCAACGATCAAACAGGATGCCACAGGCGCG
TGGTGGGTCATTTTCGTCTGTCATATCGACCTCCCTGATGTTCAACCAACAGCTGATCGACCTGTGGGCATTGATGTCGG
GCTTGAATCCTTCACCACGCTGTCAACGGGCGAGAAGACAGCACCACCAAAGTTCTACTGTCGAAGCCAAAAGAAACTTG
CCCGTGCTCAGCGCAAACTCTCACGCGCCCAAAAGGGCAGCAACAACCGCTTGAAAGCAAAAAAGCACGTTGCCCGTATC
CACAAGAAAATCAACAACCAACGTGCCGATTGGCTGCATAAGCATGCGTTGGGGATAGTTCGCCAATTTGACGTGGTGTG
CATCGAAGACCTGAATATTAAAGGCCTTGCGAGAACCAAGCTGGCCAAATCATTCAGTGATGCCGCACTGAGTACCTTCA
TGCAACGATTGCAGGAAAAAGCTGAATGGCACGGACGACGAGTTGTTAAGATTGGGCGGTTCTACGCCTCATCGAAAACT
TGCCACTTCTGTCATTCCAAGACTGCCTTGACGCTGGCTGACCGCGTGTGGACATGCCCCACCTGTGGCACGACCCATGA
TCGCGATGGCAACGCCGCGATCAACATGCTGTATGAAGGGCTACGCCTGCTTGCCGTTGGGACGACGGAAAGCCAAAACG
CTGCTCGAGATGGTGTAAACCCAGCGAAACGCTGGTAG

Upstream 100 bases:

>100_bases
ATATTATGCAACTACTACGATAATAGTGTTTTTAATTCAAATATATTGATTATTGAACAACGTAGTGGTATAGTGTCAAT
ACGTAAAAGGAAGTCTGCTC

Downstream 100 bases:

>100_bases
CTGTCGTTGAAGGCAGAAGCCACGCCCCTTGTGGGCGTGGTAGTTCACGATTATTTGGGCTGGCGTGATCAAGCAGGGCT
ACTGATTATGCCGATGACGA

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MRMLTRCYKYRLQLTPTHVETLVQWAGCRRFVWNWALHCKQTHYQTTGQRLSYQRLAAALVDLKRQPKTAFLRDCHSQPL
QQTLMDLETAFSNFFAKRAKYPRFKSRKITPHSLRFPQGVIVVDEHTISVPKIGLIRAIIHRPLQGIAKSATIKQDATGA
WWVIFVCHIDLPDVQPTADRPVGIDVGLESFTTLSTGEKTAPPKFYCRSQKKLARAQRKLSRAQKGSNNRLKAKKHVARI
HKKINNQRADWLHKHALGIVRQFDVVCIEDLNIKGLARTKLAKSFSDAALSTFMQRLQEKAEWHGRRVVKIGRFYASSKT
CHFCHSKTALTLADRVWTCPTCGTTHDRDGNAAINMLYEGLRLLAVGTTESQNAARDGVNPAKRW

Sequences:

>Translated_385_residues
MRMLTRCYKYRLQLTPTHVETLVQWAGCRRFVWNWALHCKQTHYQTTGQRLSYQRLAAALVDLKRQPKTAFLRDCHSQPL
QQTLMDLETAFSNFFAKRAKYPRFKSRKITPHSLRFPQGVIVVDEHTISVPKIGLIRAIIHRPLQGIAKSATIKQDATGA
WWVIFVCHIDLPDVQPTADRPVGIDVGLESFTTLSTGEKTAPPKFYCRSQKKLARAQRKLSRAQKGSNNRLKAKKHVARI
HKKINNQRADWLHKHALGIVRQFDVVCIEDLNIKGLARTKLAKSFSDAALSTFMQRLQEKAEWHGRRVVKIGRFYASSKT
CHFCHSKTALTLADRVWTCPTCGTTHDRDGNAAINMLYEGLRLLAVGTTESQNAARDGVNPAKRW
>Mature_385_residues
MRMLTRCYKYRLQLTPTHVETLVQWAGCRRFVWNWALHCKQTHYQTTGQRLSYQRLAAALVDLKRQPKTAFLRDCHSQPL
QQTLMDLETAFSNFFAKRAKYPRFKSRKITPHSLRFPQGVIVVDEHTISVPKIGLIRAIIHRPLQGIAKSATIKQDATGA
WWVIFVCHIDLPDVQPTADRPVGIDVGLESFTTLSTGEKTAPPKFYCRSQKKLARAQRKLSRAQKGSNNRLKAKKHVARI
HKKINNQRADWLHKHALGIVRQFDVVCIEDLNIKGLARTKLAKSFSDAALSTFMQRLQEKAEWHGRRVVKIGRFYASSKT
CHFCHSKTALTLADRVWTCPTCGTTHDRDGNAAINMLYEGLRLLAVGTTESQNAARDGVNPAKRW

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=361, Percent_Identity=34.3490304709141, Blast_Score=197, Evalue=1e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 43947; Mature: 43947

Theoretical pI: Translated: 10.95; Mature: 10.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMLTRCYKYRLQLTPTHVETLVQWAGCRRFVWNWALHCKQTHYQTTGQRLSYQRLAAAL
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDLKRQPKTAFLRDCHSQPLQQTLMDLETAFSNFFAKRAKYPRFKSRKITPHSLRFPQGV
HHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCE
IVVDEHTISVPKIGLIRAIIHRPLQGIAKSATIKQDATGAWWVIFVCHIDLPDVQPTADR
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCC
PVGIDVGLESFTTLSTGEKTAPPKFYCRSQKKLARAQRKLSRAQKGSNNRLKAKKHVARI
CCEEECCHHHHHCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
HKKINNQRADWLHKHALGIVRQFDVVCIEDLNIKGLARTKLAKSFSDAALSTFMQRLQEK
HHHHCCHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AEWHGRRVVKIGRFYASSKTCHFCHSKTALTLADRVWTCPTCGTTHDRDGNAAINMLYEG
HHHCCCEEEEEHHHHHCCCCEEHHCCCHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHC
LRLLAVGTTESQNAARDGVNPAKRW
HHEEEECCCCCCCHHHCCCCHHCCC
>Mature Secondary Structure
MRMLTRCYKYRLQLTPTHVETLVQWAGCRRFVWNWALHCKQTHYQTTGQRLSYQRLAAAL
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDLKRQPKTAFLRDCHSQPLQQTLMDLETAFSNFFAKRAKYPRFKSRKITPHSLRFPQGV
HHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCE
IVVDEHTISVPKIGLIRAIIHRPLQGIAKSATIKQDATGAWWVIFVCHIDLPDVQPTADR
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCC
PVGIDVGLESFTTLSTGEKTAPPKFYCRSQKKLARAQRKLSRAQKGSNNRLKAKKHVARI
CCEEECCHHHHHCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
HKKINNQRADWLHKHALGIVRQFDVVCIEDLNIKGLARTKLAKSFSDAALSTFMQRLQEK
HHHHCCHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AEWHGRRVVKIGRFYASSKTCHFCHSKTALTLADRVWTCPTCGTTHDRDGNAAINMLYEG
HHHCCCEEEEEHHHHHCCCCEEHHCCCHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHC
LRLLAVGTTESQNAARDGVNPAKRW
HHEEEECCCCCCCHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]