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The map label for this gene is nudF [H]

Identifier: 159899840

GI number: 159899840

Start: 4191177

End: 4191974

Strand: Direct

Name: nudF [H]

Synonym: Haur_3323

Alternate gene names: 159899840

Gene position: 4191177-4191974 (Clockwise)

Preceding gene: 159899839

Following gene: 159899842

Centisome position: 66.04

GC content: 53.63

Gene sequence:

>798_bases
ATGTATTGTTTACACTGTCGGCAGCGTTTAGAGTTACGCCTACGCGGCGGTCGCGAGCGTTTGATCTGCCCTGAATGTGG
TTGGGTGCATTTTACCAGTGCTCCGGCTGGCGTGGCCGCCGTCATTCAAAATGATTTTGGCGAGGTGCTGTTGGTGCGGC
GAGCTGGCACGTTTCGCCCAGGTTTATGGTGTTTGCCCTGTGGCTACCTTGAGCACGATGAAGAAATGCGCCAAGGCTTA
GCCCGCGAGGTGCTGGAAGAAACTGGCTTGCAAGCCGAGATTGGCGAAGTTATTGCTGTTCATTCCAATCTTGATCGCGA
GCCACCCTACCCGCTGGGGGTGTGGCTACGGGCAACGGTCAGTGGTGGCAATTTGCAAGCGGGCGGCGATGCTGATTTGG
CTCAATTTTTCGCGCTCGATCAACTGCCACCACTGGCTTTCAACCACGATGCCTTAGTTTTAGCCCAACTTCAACAGCCC
GCCGATGCCAGTGTGGCCGCGTTAACCCAAGAGATGCATGCATTTGTGCGCTCCAAGGGTTGGTACGAGGCCAATTCAAA
ACGCCCACAAACTCCCCGCAACTTAGCGATTTCGCTGACGCTTGAAGCGGCTGAAGTGCTTGAACACCTGCAATGGCGTG
AGGAAATTGTCGATCAAACTGAATGGCAGGGCGAGTTGGCCGATGTATTGCTCTATTTGGTGCAATTAGCTGATACCACG
AACGTTAATTTGGTTGAAGCTGTGCGAGCCAAATTACGCAAAAACGCTACTCGCGTGTGGGATCAGCCAGCTCAATAA

Upstream 100 bases:

>100_bases
CGCTGTAGTATACATGGTTTTGGCAAATTGACAATCGGGCTGTAGCCCTAGAATAACCAACCTGAGGATTGTCCTTGTTC
TAGTTTAGGAGCACGTTGCG

Downstream 100 bases:

>100_bases
GTGGCTAAAATGAGAGAATTAAAACTATTTAATGTCGTTGATTGACAGCTAGCCGCAATATCCGCTATAGTTAAACAGAA
CTTGTGTTCTATATCAAATA

Product: NUDIX hydrolase

Products: NA

Alternate protein names: ADP-ribose diphosphatase; ADP-ribose phosphohydrolase; Adenosine diphosphoribose pyrophosphatase; ADPR-PPase [H]

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MYCLHCRQRLELRLRGGRERLICPECGWVHFTSAPAGVAAVIQNDFGEVLLVRRAGTFRPGLWCLPCGYLEHDEEMRQGL
AREVLEETGLQAEIGEVIAVHSNLDREPPYPLGVWLRATVSGGNLQAGGDADLAQFFALDQLPPLAFNHDALVLAQLQQP
ADASVAALTQEMHAFVRSKGWYEANSKRPQTPRNLAISLTLEAAEVLEHLQWREEIVDQTEWQGELADVLLYLVQLADTT
NVNLVEAVRAKLRKNATRVWDQPAQ

Sequences:

>Translated_265_residues
MYCLHCRQRLELRLRGGRERLICPECGWVHFTSAPAGVAAVIQNDFGEVLLVRRAGTFRPGLWCLPCGYLEHDEEMRQGL
AREVLEETGLQAEIGEVIAVHSNLDREPPYPLGVWLRATVSGGNLQAGGDADLAQFFALDQLPPLAFNHDALVLAQLQQP
ADASVAALTQEMHAFVRSKGWYEANSKRPQTPRNLAISLTLEAAEVLEHLQWREEIVDQTEWQGELADVLLYLVQLADTT
NVNLVEAVRAKLRKNATRVWDQPAQ
>Mature_265_residues
MYCLHCRQRLELRLRGGRERLICPECGWVHFTSAPAGVAAVIQNDFGEVLLVRRAGTFRPGLWCLPCGYLEHDEEMRQGL
AREVLEETGLQAEIGEVIAVHSNLDREPPYPLGVWLRATVSGGNLQAGGDADLAQFFALDQLPPLAFNHDALVLAQLQQP
ADASVAALTQEMHAFVRSKGWYEANSKRPQTPRNLAISLTLEAAEVLEHLQWREEIVDQTEWQGELADVLLYLVQLADTT
NVNLVEAVRAKLRKNATRVWDQPAQ

Specific function: Specific For Pyrimidine Substrates. Acts On 5-Methyl- Dctp, Ctp And Dctp In Decreasing Order. [C]

COG id: COG1051

COG function: function code F; ADP-ribose pyrophosphatase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020476
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797 [H]

Pfam domain/function: PF00293 NUDIX [H]

EC number: =3.6.1.13 [H]

Molecular weight: Translated: 29623; Mature: 29623

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYCLHCRQRLELRLRGGRERLICPECGWVHFTSAPAGVAAVIQNDFGEVLLVRRAGTFRP
CCCHHHHHHHHHHCCCCCCEEECCCCCEEEEECCCCHHHHHHHHCCCCEEEEECCCCCCC
GLWCLPCGYLEHDEEMRQGLAREVLEETGLQAEIGEVIAVHSNLDREPPYPLGVWLRATV
CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHEECCCCCCCCCCCEEEEEEEEE
SGGNLQAGGDADLAQFFALDQLPPLAFNHDALVLAQLQQPADASVAALTQEMHAFVRSKG
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC
WYEANSKRPQTPRNLAISLTLEAAEVLEHLQWREEIVDQTEWQGELADVLLYLVQLADTT
CCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
NVNLVEAVRAKLRKNATRVWDQPAQ
CCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MYCLHCRQRLELRLRGGRERLICPECGWVHFTSAPAGVAAVIQNDFGEVLLVRRAGTFRP
CCCHHHHHHHHHHCCCCCCEEECCCCCEEEEECCCCHHHHHHHHCCCCEEEEECCCCCCC
GLWCLPCGYLEHDEEMRQGLAREVLEETGLQAEIGEVIAVHSNLDREPPYPLGVWLRATV
CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHEECCCCCCCCCCCEEEEEEEEE
SGGNLQAGGDADLAQFFALDQLPPLAFNHDALVLAQLQQPADASVAALTQEMHAFVRSKG
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC
WYEANSKRPQTPRNLAISLTLEAAEVLEHLQWREEIVDQTEWQGELADVLLYLVQLADTT
CCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
NVNLVEAVRAKLRKNATRVWDQPAQ
CCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087; 9694840 [H]