Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
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Accession | NC_009972 |
Length | 6,346,587 |
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The map label for this gene is 159899790
Identifier: 159899790
GI number: 159899790
Start: 4135182
End: 4135880
Strand: Direct
Name: 159899790
Synonym: Haur_3272
Alternate gene names: NA
Gene position: 4135182-4135880 (Clockwise)
Preceding gene: 159899787
Following gene: 159899793
Centisome position: 65.16
GC content: 53.93
Gene sequence:
>699_bases ATGACAACAATTCGCCATTCTGTGGAAGCCACGGTTAGTCGGATGGTGTTGCGCACGTTGCGCGAGCGAGCACAGCTGGC AGGCCTACCGCAAGCCCGTAGTGATGCGCCCCGTGCCTTAGCAGCCTTGCTTGATCAAACTATTACTGAACAAGTCAGTT TAGATCAGCTCCAACGCCAAGCTCAACAAGCGATCGAAGCCGGAATTGGCTGCTTAGTTGTGCCATTGGAGCAAGCCGAA CTCTGGGTTGATGCGACTGCTGGCAGTGGACTCCGCATTGGCGTGGCAACCCACACTCGTGAACAAGCCGAGCAGGCCTT ACGGCTTGGCGTTACCGAAATTGAACTCATTGTGCCGCAAACGGTCATTGGAGATGCAGAACACTTAGAAACATGGCTTG GCGAAATGCTGCCGCGTTCGTATGATCCCAAGCCAGTGCTTAAACTCAACCTAACTGCCTGCGATCATCACCAGATTTTG CTGCGAGCATGTGCTCAAGCCGCCACCCACGATTTGGATCTCGTGACCGTGCCCGCTGGGCTAGTCGCTGATGTGCGGCG TACCATCAACTCGGCGATGGGGATTAAAGTTGCTGCTGTGGATAATTTGGCCCAAGCCCGTGGGTTGTTGAGCAATGGAT GCACCCGTTTAGGCACAAGTATTGCGCCAGATTTATTGGCAGCAGCACAGCTTAAATAG
Upstream 100 bases:
>100_bases TTATCAAATCGTCATCCACAATGCGGATCATGTCGCTGATAATACCATAAGCTTTTGTGCTTAGTACAATTGCTTTGCTT AATTAAAGGAGTTGATTGCG
Downstream 100 bases:
>100_bases AAATGTGCCGTCAAAATAACGGCACATCTCAAACAAACCAACAAATGAGCTTATTGAACTGCTGGTAAGAACAGTGGATT ACCAACCACAATCAGACCAT
Product: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 232; Mature: 231
Protein sequence:
>232_residues MTTIRHSVEATVSRMVLRTLRERAQLAGLPQARSDAPRALAALLDQTITEQVSLDQLQRQAQQAIEAGIGCLVVPLEQAE LWVDATAGSGLRIGVATHTREQAEQALRLGVTEIELIVPQTVIGDAEHLETWLGEMLPRSYDPKPVLKLNLTACDHHQIL LRACAQAATHDLDLVTVPAGLVADVRRTINSAMGIKVAAVDNLAQARGLLSNGCTRLGTSIAPDLLAAAQLK
Sequences:
>Translated_232_residues MTTIRHSVEATVSRMVLRTLRERAQLAGLPQARSDAPRALAALLDQTITEQVSLDQLQRQAQQAIEAGIGCLVVPLEQAE LWVDATAGSGLRIGVATHTREQAEQALRLGVTEIELIVPQTVIGDAEHLETWLGEMLPRSYDPKPVLKLNLTACDHHQIL LRACAQAATHDLDLVTVPAGLVADVRRTINSAMGIKVAAVDNLAQARGLLSNGCTRLGTSIAPDLLAAAQLK >Mature_231_residues TTIRHSVEATVSRMVLRTLRERAQLAGLPQARSDAPRALAALLDQTITEQVSLDQLQRQAQQAIEAGIGCLVVPLEQAEL WVDATAGSGLRIGVATHTREQAEQALRLGVTEIELIVPQTVIGDAEHLETWLGEMLPRSYDPKPVLKLNLTACDHHQILL RACAQAATHDLDLVTVPAGLVADVRRTINSAMGIKVAAVDNLAQARGLLSNGCTRLGTSIAPDLLAAAQLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24859; Mature: 24728
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTIRHSVEATVSRMVLRTLRERAQLAGLPQARSDAPRALAALLDQTITEQVSLDQLQRQ CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH AQQAIEAGIGCLVVPLEQAELWVDATAGSGLRIGVATHTREQAEQALRLGVTEIELIVPQ HHHHHHHCCCEEEEEECHHHEEEEECCCCCEEEEEHHCCHHHHHHHHHCCCHHHHEECCH TVIGDAEHLETWLGEMLPRSYDPKPVLKLNLTACDHHQILLRACAQAATHDLDLVTVPAG HHHCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCEEEEECHH LVADVRRTINSAMGIKVAAVDNLAQARGLLSNGCTRLGTSIAPDLLAAAQLK HHHHHHHHHHHHHCEEEHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHCCC >Mature Secondary Structure TTIRHSVEATVSRMVLRTLRERAQLAGLPQARSDAPRALAALLDQTITEQVSLDQLQRQ CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH AQQAIEAGIGCLVVPLEQAELWVDATAGSGLRIGVATHTREQAEQALRLGVTEIELIVPQ HHHHHHHCCCEEEEEECHHHEEEEECCCCCEEEEEHHCCHHHHHHHHHCCCHHHHEECCH TVIGDAEHLETWLGEMLPRSYDPKPVLKLNLTACDHHQILLRACAQAATHDLDLVTVPAG HHHCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCEEEEECHH LVADVRRTINSAMGIKVAAVDNLAQARGLLSNGCTRLGTSIAPDLLAAAQLK HHHHHHHHHHHHHCEEEHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA