Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
---|---|
Accession | NC_009972 |
Length | 6,346,587 |
Click here to switch to the map view.
The map label for this gene is 159899754
Identifier: 159899754
GI number: 159899754
Start: 4096464
End: 4099337
Strand: Direct
Name: 159899754
Synonym: Haur_3236
Alternate gene names: NA
Gene position: 4096464-4099337 (Clockwise)
Preceding gene: 159899753
Following gene: 159899755
Centisome position: 64.55
GC content: 51.39
Gene sequence:
>2874_bases ATGCACGATGTTGAGCGAATCCGTCAGAAAATTATTAATTTACAAGCCCGCCGTGCCCAAGAAAGCGACCAAGATTTGAT CGAGGCGCTTGATCAGATGATTGGGCAACATCAACACCAACTAAGTTTGTTGGCTCAACAAGCTGCCGCTGTGCTCGAAC CACCAGCCCCCGCCGCTACCCAAGGCCAAGTTTATGGTTCCAGTGTGATGACCAACCTTGGTCATGTTTGGATCAACCAA GTTTTTAATGCGCCCTTGAGCACTGGCGAACGCACCGATCAATTGATTTTGCACTATCTAGCTCATGTTCAGGGCAATGC TGATCGCTTAGTGCTGGGCACTGATGTCCAAGATAGCGATCAAGAGCGTATGTCGTTGCAGCGGGTGTTTACCATGCTGC AAGCCGATTTTTATGGGCCGATTGCAGGCGATGCCTTGTTGCAATCGCTGCTGCTGGGTAGCTCACAGCCACGCCCGCAA TTGCAAGATTCGATTCTCAAGGCGCTCAACCAAATTCAACATCAGCGTTCGGTGATTTTGGGCGTGCCTGGTGGCGGCAA AACGACGGTGGTGTCGTATCTGGCTTCGGCTCAAGCGGCGGCATTGCTCGACCCAAGCAAAGCTGAATTTTTGCATAGCC AAGGCTGGATGCACACCAAACTTGTGCCAGTGCGGGTGCGACTGAAACATGTGCAACCACCAGCCGACCCTGAGCAACAA ACTGCCGACGCTTTTTGGGAAGTCGTGACCGAATTGCAATTGGCTGGACGGTTTGGCCAACGTGCCATCAATAGCGATGT TGGCTTTCAGCGGATCGAAGTTGAGCGCCAACAACGGCTGCAAGATGCAATTGAAGAATTATTGACCAATGGCAATGGCT TGTTGCTGCTCGATGGACTTGATGAAGTGCAGCCCGAACATCTGGCTGCCGTCAAACGCTGTATCGAGCATGCTCAACGC ATGTTTCACAAAAGCCGAATTATTGTCACATGTCGGGTGTTTGATTATGAGCATCCGCTGCCACCGCCGTTTCCCTCGCG CCAGCTCTACGATTGGCCGACAATTCAATTGATGCCGTTTGACCTAACCGCGCAGCATGTGTATATCACCAATTACTATA GCGAATTGGGACGCTTGCATGCCTCACACGCTGATATTGTCAGCATTCGTAAAAAGCATGCCAAACTGCATGCCGAGTTG ACGAAATCGGGGATGTTGCATGAACTGACACGCACGCCGTTACTCTTGGCGCTGACCGTGCACGTGAATATGGTGCACAC TGATTTGCCTGAAAGCGAAGGCAAATTGCTACACATTTGTATCGACGAATTGCTTAAACGCCGTGCGCCTGAGGCCATCG CCGTTTCACTTGAAGATTTGTATGACTTGGTTGCATTGTTAGGCTATTATGCCCATAGTCAAGAAGAAATTCAAGGCAAA GCGTTGCTTAGTTTGCAGCAAATCAATATGGTGGTGCAGCGCTATTATAGCGATCGCTATCCGCATCCCAATCAAATTCA TATGCTTGCGCAGGCGGTTGGCAACGCAACCTTGCGCTTGATCAATAGCAATGGCTTATTGCAAGAGGCTAGCAATAATC AGCAAGATAATCCACATTATGATTTTGCCCATCGCTTGTTTCAGCAATTTTTGGCAGGCATGTATTTGCTCAATCAAGAG CGCCACGACGAATGTATTGAACGGGCCGGCAGCGAGCATTGGCGGGTTTGCTTGCACTACATGGCCAATTTTGCCCCTTA CATTCAAAAGCAAAGCTTCATTTTTGGGGTGATTCAAGATTTATTGGGTGGTATGCCCGATGAACAGGTGCAAGGCTCGC ACCTGCTTTTGGCGATTGGCAAAGCCAAAGTTGCTAGCGCTGGGCGGCGCAATTTATGGCAGCAAGCAGTCAATCATCTC AAAAATATTGGCGGCTTGAGTGGCAGTAGCCGAGGCGTGCGCCGTTGGGCACCACCACGCATCGCCTTCCCCACTCGTTT GCGGGCGGCCTTAGTGCTGGGCGCAATTGGCGATACCCGCTTTATTGGCGAAGATGGCGCACTCATTGCGCTGACTGAGC GGGTTGTTTGCATTCATGCTGGCAGCGTTGAGCTGGAAGATCCTCATTCACGCCCCCAAACCTATAGCGTTGAGCGCTTT TGGATGAGCCGCTATCTTCTGACCAACTTTGAGTATAGCCAATTTATTGCTGCCCGTGGGTATTTGGATGATCAGTGGTG GCAGAACGACGATGCGCGGCATTGGCGACGCGGTGATCCATCGTGGCTACATGGTTTGCCACCGTGGGCGGCTCCGCGCC GCTTGCCCGATTTATGGCATAACGAGCGTTTCAATCACCCAACTCAGCCAATTGTTGGAGTGAATTGGTACGAAGCGAAT GCCTTTTGTGCTTGGCTCACGGTGCAACTGCGGCCTCAACTTGATGCGCTTGGGCCAAATTTGGTGGTACGTTTGCCGAG TGAGGCTGAATGGCAACTCGCCGCCAGCCAACATAGTGAGCGCGAATACCCGTGGGGCGATGAATGGCGCAACGATCATG CCAACACCAGTGAAAGCGAGCTTGAGCAACCAACTCCGGTTGGTATGTTTCCCTATGGCACCTGGAGCGATGGCCCAATG GATTTAGCCGGCAATGTTTGCGAATGGACTAATAGCATCAATCGCGACCCTGAACTTGAACCACAAACCACGCGTAATCG CCGTTTGCAACATCGCGATTTGATGGTCGCTGTGCGTGGTGGTTCGTGGTTTCATAATCGCTATTTTGCGCGTTGTCGTT CGCGCTTACAGCATCGCCCATTTAGCCATGGCCCAAATATTGGTGTGCGCTTGATTATCGGCCACGCCGAATAA
Upstream 100 bases:
>100_bases CCCTTTATGGACAAATGGCGGGGGATATACATCCCCCGTTTGAGGTATTTTATGCCATACTACAATGTATGGTATTTTTT TGTAATCCATGAGGCGGCCT
Downstream 100 bases:
>100_bases AGGAACTGAGATTTATGCAACTTTCAATGTTAGAGCAAATGAGCACCCAAAATTTGTATGATTTACGTGAGCAGCATCGC AAAAATTTGAGCATGCTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 957; Mature: 957
Protein sequence:
>957_residues MHDVERIRQKIINLQARRAQESDQDLIEALDQMIGQHQHQLSLLAQQAAAVLEPPAPAATQGQVYGSSVMTNLGHVWINQ VFNAPLSTGERTDQLILHYLAHVQGNADRLVLGTDVQDSDQERMSLQRVFTMLQADFYGPIAGDALLQSLLLGSSQPRPQ LQDSILKALNQIQHQRSVILGVPGGGKTTVVSYLASAQAAALLDPSKAEFLHSQGWMHTKLVPVRVRLKHVQPPADPEQQ TADAFWEVVTELQLAGRFGQRAINSDVGFQRIEVERQQRLQDAIEELLTNGNGLLLLDGLDEVQPEHLAAVKRCIEHAQR MFHKSRIIVTCRVFDYEHPLPPPFPSRQLYDWPTIQLMPFDLTAQHVYITNYYSELGRLHASHADIVSIRKKHAKLHAEL TKSGMLHELTRTPLLLALTVHVNMVHTDLPESEGKLLHICIDELLKRRAPEAIAVSLEDLYDLVALLGYYAHSQEEIQGK ALLSLQQINMVVQRYYSDRYPHPNQIHMLAQAVGNATLRLINSNGLLQEASNNQQDNPHYDFAHRLFQQFLAGMYLLNQE RHDECIERAGSEHWRVCLHYMANFAPYIQKQSFIFGVIQDLLGGMPDEQVQGSHLLLAIGKAKVASAGRRNLWQQAVNHL KNIGGLSGSSRGVRRWAPPRIAFPTRLRAALVLGAIGDTRFIGEDGALIALTERVVCIHAGSVELEDPHSRPQTYSVERF WMSRYLLTNFEYSQFIAARGYLDDQWWQNDDARHWRRGDPSWLHGLPPWAAPRRLPDLWHNERFNHPTQPIVGVNWYEAN AFCAWLTVQLRPQLDALGPNLVVRLPSEAEWQLAASQHSEREYPWGDEWRNDHANTSESELEQPTPVGMFPYGTWSDGPM DLAGNVCEWTNSINRDPELEPQTTRNRRLQHRDLMVAVRGGSWFHNRYFARCRSRLQHRPFSHGPNIGVRLIIGHAE
Sequences:
>Translated_957_residues MHDVERIRQKIINLQARRAQESDQDLIEALDQMIGQHQHQLSLLAQQAAAVLEPPAPAATQGQVYGSSVMTNLGHVWINQ VFNAPLSTGERTDQLILHYLAHVQGNADRLVLGTDVQDSDQERMSLQRVFTMLQADFYGPIAGDALLQSLLLGSSQPRPQ LQDSILKALNQIQHQRSVILGVPGGGKTTVVSYLASAQAAALLDPSKAEFLHSQGWMHTKLVPVRVRLKHVQPPADPEQQ TADAFWEVVTELQLAGRFGQRAINSDVGFQRIEVERQQRLQDAIEELLTNGNGLLLLDGLDEVQPEHLAAVKRCIEHAQR MFHKSRIIVTCRVFDYEHPLPPPFPSRQLYDWPTIQLMPFDLTAQHVYITNYYSELGRLHASHADIVSIRKKHAKLHAEL TKSGMLHELTRTPLLLALTVHVNMVHTDLPESEGKLLHICIDELLKRRAPEAIAVSLEDLYDLVALLGYYAHSQEEIQGK ALLSLQQINMVVQRYYSDRYPHPNQIHMLAQAVGNATLRLINSNGLLQEASNNQQDNPHYDFAHRLFQQFLAGMYLLNQE RHDECIERAGSEHWRVCLHYMANFAPYIQKQSFIFGVIQDLLGGMPDEQVQGSHLLLAIGKAKVASAGRRNLWQQAVNHL KNIGGLSGSSRGVRRWAPPRIAFPTRLRAALVLGAIGDTRFIGEDGALIALTERVVCIHAGSVELEDPHSRPQTYSVERF WMSRYLLTNFEYSQFIAARGYLDDQWWQNDDARHWRRGDPSWLHGLPPWAAPRRLPDLWHNERFNHPTQPIVGVNWYEAN AFCAWLTVQLRPQLDALGPNLVVRLPSEAEWQLAASQHSEREYPWGDEWRNDHANTSESELEQPTPVGMFPYGTWSDGPM DLAGNVCEWTNSINRDPELEPQTTRNRRLQHRDLMVAVRGGSWFHNRYFARCRSRLQHRPFSHGPNIGVRLIIGHAE >Mature_957_residues MHDVERIRQKIINLQARRAQESDQDLIEALDQMIGQHQHQLSLLAQQAAAVLEPPAPAATQGQVYGSSVMTNLGHVWINQ VFNAPLSTGERTDQLILHYLAHVQGNADRLVLGTDVQDSDQERMSLQRVFTMLQADFYGPIAGDALLQSLLLGSSQPRPQ LQDSILKALNQIQHQRSVILGVPGGGKTTVVSYLASAQAAALLDPSKAEFLHSQGWMHTKLVPVRVRLKHVQPPADPEQQ TADAFWEVVTELQLAGRFGQRAINSDVGFQRIEVERQQRLQDAIEELLTNGNGLLLLDGLDEVQPEHLAAVKRCIEHAQR MFHKSRIIVTCRVFDYEHPLPPPFPSRQLYDWPTIQLMPFDLTAQHVYITNYYSELGRLHASHADIVSIRKKHAKLHAEL TKSGMLHELTRTPLLLALTVHVNMVHTDLPESEGKLLHICIDELLKRRAPEAIAVSLEDLYDLVALLGYYAHSQEEIQGK ALLSLQQINMVVQRYYSDRYPHPNQIHMLAQAVGNATLRLINSNGLLQEASNNQQDNPHYDFAHRLFQQFLAGMYLLNQE RHDECIERAGSEHWRVCLHYMANFAPYIQKQSFIFGVIQDLLGGMPDEQVQGSHLLLAIGKAKVASAGRRNLWQQAVNHL KNIGGLSGSSRGVRRWAPPRIAFPTRLRAALVLGAIGDTRFIGEDGALIALTERVVCIHAGSVELEDPHSRPQTYSVERF WMSRYLLTNFEYSQFIAARGYLDDQWWQNDDARHWRRGDPSWLHGLPPWAAPRRLPDLWHNERFNHPTQPIVGVNWYEAN AFCAWLTVQLRPQLDALGPNLVVRLPSEAEWQLAASQHSEREYPWGDEWRNDHANTSESELEQPTPVGMFPYGTWSDGPM DLAGNVCEWTNSINRDPELEPQTTRNRRLQHRDLMVAVRGGSWFHNRYFARCRSRLQHRPFSHGPNIGVRLIIGHAE
Specific function: Unknown
COG id: COG1262
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI257470975, Length=260, Percent_Identity=24.2307692307692, Blast_Score=70, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 108679; Mature: 108679
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHDVERIRQKIINLQARRAQESDQDLIEALDQMIGQHQHQLSLLAQQAAAVLEPPAPAAT CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC QGQVYGSSVMTNLGHVWINQVFNAPLSTGERTDQLILHYLAHVQGNADRLVLGTDVQDSD CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCH QERMSLQRVFTMLQADFYGPIAGDALLQSLLLGSSQPRPQLQDSILKALNQIQHQRSVIL HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEE GVPGGGKTTVVSYLASAQAAALLDPSKAEFLHSQGWMHTKLVPVRVRLKHVQPPADPEQQ ECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEEEEEEEECCCCCCCCHH TADAFWEVVTELQLAGRFGQRAINSDVGFQRIEVERQQRLQDAIEELLTNGNGLLLLDGL HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC DEVQPEHLAAVKRCIEHAQRMFHKSRIIVTCRVFDYEHPLPPPFPSRQLYDWPTIQLMPF CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEC DLTAQHVYITNYYSELGRLHASHADIVSIRKKHAKLHAELTKSGMLHELTRTPLLLALTV CCCCCEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEEEEE HVNMVHTDLPESEGKLLHICIDELLKRRAPEAIAVSLEDLYDLVALLGYYAHSQEEIQGK EEEEEECCCCCCCCCEEHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHCCHHHHCHH ALLSLQQINMVVQRYYSDRYPHPNQIHMLAQAVGNATLRLINSNGLLQEASNNQQDNPHY HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCEECCCCCCCCCCCH DFAHRLFQQFLAGMYLLNQERHDECIERAGSEHWRVCLHYMANFAPYIQKQSFIFGVIQD HHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLGGMPDEQVQGSHLLLAIGKAKVASAGRRNLWQQAVNHLKNIGGLSGSSRGVRRWAPPR HHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC IAFPTRLRAALVLGAIGDTRFIGEDGALIALTERVVCIHAGSVELEDPHSRPQTYSVERF CCCHHHHHHHHHHHCCCCCEEECCCCCEEEEECEEEEEECCCEEECCCCCCCCCCHHHHH WMSRYLLTNFEYSQFIAARGYLDDQWWQNDDARHWRRGDPSWLHGLPPWAAPRRLPDLWH HHHHHHHHCCCHHHHHHHCCCCCCHHCCCCCCHHHCCCCCCHHCCCCCCCCCCCCHHHHC NERFNHPTQPIVGVNWYEANAFCAWLTVQLRPQLDALGPNLVVRLPSEAEWQLAASQHSE CCCCCCCCCCEEECEEEECCEEEEEEEEEECCCHHHCCCCEEEECCCCCCHHHHHHHCCC REYPWGDEWRNDHANTSESELEQPTPVGMFPYGTWSDGPMDLAGNVCEWTNSINRDPELE CCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHCCCCCCCCC PQTTRNRRLQHRDLMVAVRGGSWFHNRYFARCRSRLQHRPFSHGPNIGVRLIIGHAE CCCHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCC >Mature Secondary Structure MHDVERIRQKIINLQARRAQESDQDLIEALDQMIGQHQHQLSLLAQQAAAVLEPPAPAAT CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC QGQVYGSSVMTNLGHVWINQVFNAPLSTGERTDQLILHYLAHVQGNADRLVLGTDVQDSD CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCH QERMSLQRVFTMLQADFYGPIAGDALLQSLLLGSSQPRPQLQDSILKALNQIQHQRSVIL HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEE GVPGGGKTTVVSYLASAQAAALLDPSKAEFLHSQGWMHTKLVPVRVRLKHVQPPADPEQQ ECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEEEEEEEECCCCCCCCHH TADAFWEVVTELQLAGRFGQRAINSDVGFQRIEVERQQRLQDAIEELLTNGNGLLLLDGL HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC DEVQPEHLAAVKRCIEHAQRMFHKSRIIVTCRVFDYEHPLPPPFPSRQLYDWPTIQLMPF CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEC DLTAQHVYITNYYSELGRLHASHADIVSIRKKHAKLHAELTKSGMLHELTRTPLLLALTV CCCCCEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEEEEE HVNMVHTDLPESEGKLLHICIDELLKRRAPEAIAVSLEDLYDLVALLGYYAHSQEEIQGK EEEEEECCCCCCCCCEEHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHCCHHHHCHH ALLSLQQINMVVQRYYSDRYPHPNQIHMLAQAVGNATLRLINSNGLLQEASNNQQDNPHY HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCEECCCCCCCCCCCH DFAHRLFQQFLAGMYLLNQERHDECIERAGSEHWRVCLHYMANFAPYIQKQSFIFGVIQD HHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLGGMPDEQVQGSHLLLAIGKAKVASAGRRNLWQQAVNHLKNIGGLSGSSRGVRRWAPPR HHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC IAFPTRLRAALVLGAIGDTRFIGEDGALIALTERVVCIHAGSVELEDPHSRPQTYSVERF CCCHHHHHHHHHHHCCCCCEEECCCCCEEEEECEEEEEECCCEEECCCCCCCCCCHHHHH WMSRYLLTNFEYSQFIAARGYLDDQWWQNDDARHWRRGDPSWLHGLPPWAAPRRLPDLWH HHHHHHHHCCCHHHHHHHCCCCCCHHCCCCCCHHHCCCCCCHHCCCCCCCCCCCCHHHHC NERFNHPTQPIVGVNWYEANAFCAWLTVQLRPQLDALGPNLVVRLPSEAEWQLAASQHSE CCCCCCCCCCEEECEEEECCEEEEEEEEEECCCHHHCCCCEEEECCCCCCHHHHHHHCCC REYPWGDEWRNDHANTSESELEQPTPVGMFPYGTWSDGPMDLAGNVCEWTNSINRDPELE CCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHCCCCCCCCC PQTTRNRRLQHRDLMVAVRGGSWFHNRYFARCRSRLQHRPFSHGPNIGVRLIIGHAE CCCHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA