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The map label for this gene is crtI [H]

Identifier: 159899703

GI number: 159899703

Start: 4028975

End: 4030453

Strand: Direct

Name: crtI [H]

Synonym: Haur_3185

Alternate gene names: 159899703

Gene position: 4028975-4030453 (Clockwise)

Preceding gene: 159899701

Following gene: 159899704

Centisome position: 63.48

GC content: 49.9

Gene sequence:

>1479_bases
ATGCGAATTGTTGTGATTGGCAGTGGGTTTGGCGGTTTGGGTGCGGCGATTCGGTTGCAAGCCAAAGGCCACGATGTGAC
GATTTTGGAGAAGCGCGATAAGCCTGGTGGTCGGGCTTATGTTTATGAGCAAGATGGTTTTAAATTTGATGGCGGGCCAA
CTGTGATCACCGCGCCATTTATGATTGATGATTTATTTACTTTGGCGGGCCGCAAAACCGAAGATTATGTCACGATGATG
CCAGTCAGTCCGTTTTATCGCATCTTTTTTCATGATCAAAGCCATTTCGATTACTCCGATGACCTGCCAAGCATGGTGCG
CCAAATTCGCGAGTGGAACCCTGCTGATGTTGATGGCTATTTGGAATTTGTGCGCCGCGCCGAGCAGATTTTCAACAAAG
GCTTCACCGAATTAGCCGATCAGCCTTTTTTGAAATTAGCTGATATGCTCAAAATCGTGCCCGATATGATCAAACTTGAG
TCGTATCGCACAGTTTATGGCTTTGTTTCGAAATTTGTGCAAGATGAGCGTTTGCGCCAAGTGCTCAGTTTTCACCCGTT
GCTGGTCGGCGGCAACCCCTTCCAAACCACCAGCATTTATACCTTGATCAACTTCCTCGAACGCAAATGGGGCGTGTGGT
TTGCCAAAGGCGGCACAGGGGCGTTAGTTCAAGCCTTGGTTAAATTATTTGAAGATTTGGGCGGCAAAATCGAACTCAAT
CGCGATGTAGCGGAAATTAGCACCTACAACGGCAAGGCTACGGGCGTGCGCCTGCGTGATGGCAGCGAAATCAAAGCCGA
TGCGGTGGTTTGCAATAGCGAAGTTGCTTGGGCCTATCAAAATCTCTTGCCCAGCAGCATGCGCAAAAAATACACCGACC
GCAAGCTCGCTCGGATGCGCTATTCAATGTCGCTGGTCGTGATCTATTTCGGCACCGATCGTCAATATCGCGGCCAAGAT
GGGCCAAAACTCGCACATCACGATATTATTTTGGGGCCACGCTACCAGCCCTTGCTTGATGATATTTTCACGAAAAAACA
GCTGGCCGATGATTTCTCGCTGTATTTGCATATGCCCACCTTGACCGATCCATCGTTAGCACCAGAAGGCTGCGAGGCTT
TTTATGTGCTTTCGCCAGTGCCGCACCTTGGTTCGGGCACCGATTGGCGGCAGACAGCCAAGCCATATCGCGACCGAATT
ATGAACTTTTTAGAAGATCGCTACCTGCCCAATTTATCCAAACATATTGTCAGCGAGCATATGATTACGCCCTTGCATTT
TGCCGAAACCCTGAATAGCTACCAAGGCAGCGCCTTCTCGGTCGAGCCAATTCTGACGCAATCGGCCTGGTTCCGTCCGC
ACAATCGCTCGGAAGAAATTCCTAATCTCTATTTTGTCGGGGCTGGAACCCACCCCGGGGCTGGCTTGCCGGGCGTATTA
TCCAGCGCCAAAATCGTCGATGATTTGATTGGAGCCTAA

Upstream 100 bases:

>100_bases
CTCTACAACCATCCAGCGCACGATGATCCGCGTAGCATGGCTTAGAATGCGCTTATTAGCGTTAATCATACCGTTTTTTG
GTTGTTTGAGGAATATTTCG

Downstream 100 bases:

>100_bases
TCTATTCTCCGTTGAAACACACCACGATTATGCTTTAATCATGGTGTGTTTGCTTTAACCGCCAGCAAGCGACTAGATTG
AACCAGAATAGGTGTGCTAT

Product: zeta-phytoene desaturase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 492; Mature: 492

Protein sequence:

>492_residues
MRIVVIGSGFGGLGAAIRLQAKGHDVTILEKRDKPGGRAYVYEQDGFKFDGGPTVITAPFMIDDLFTLAGRKTEDYVTMM
PVSPFYRIFFHDQSHFDYSDDLPSMVRQIREWNPADVDGYLEFVRRAEQIFNKGFTELADQPFLKLADMLKIVPDMIKLE
SYRTVYGFVSKFVQDERLRQVLSFHPLLVGGNPFQTTSIYTLINFLERKWGVWFAKGGTGALVQALVKLFEDLGGKIELN
RDVAEISTYNGKATGVRLRDGSEIKADAVVCNSEVAWAYQNLLPSSMRKKYTDRKLARMRYSMSLVVIYFGTDRQYRGQD
GPKLAHHDIILGPRYQPLLDDIFTKKQLADDFSLYLHMPTLTDPSLAPEGCEAFYVLSPVPHLGSGTDWRQTAKPYRDRI
MNFLEDRYLPNLSKHIVSEHMITPLHFAETLNSYQGSAFSVEPILTQSAWFRPHNRSEEIPNLYFVGAGTHPGAGLPGVL
SSAKIVDDLIGA

Sequences:

>Translated_492_residues
MRIVVIGSGFGGLGAAIRLQAKGHDVTILEKRDKPGGRAYVYEQDGFKFDGGPTVITAPFMIDDLFTLAGRKTEDYVTMM
PVSPFYRIFFHDQSHFDYSDDLPSMVRQIREWNPADVDGYLEFVRRAEQIFNKGFTELADQPFLKLADMLKIVPDMIKLE
SYRTVYGFVSKFVQDERLRQVLSFHPLLVGGNPFQTTSIYTLINFLERKWGVWFAKGGTGALVQALVKLFEDLGGKIELN
RDVAEISTYNGKATGVRLRDGSEIKADAVVCNSEVAWAYQNLLPSSMRKKYTDRKLARMRYSMSLVVIYFGTDRQYRGQD
GPKLAHHDIILGPRYQPLLDDIFTKKQLADDFSLYLHMPTLTDPSLAPEGCEAFYVLSPVPHLGSGTDWRQTAKPYRDRI
MNFLEDRYLPNLSKHIVSEHMITPLHFAETLNSYQGSAFSVEPILTQSAWFRPHNRSEEIPNLYFVGAGTHPGAGLPGVL
SSAKIVDDLIGA
>Mature_492_residues
MRIVVIGSGFGGLGAAIRLQAKGHDVTILEKRDKPGGRAYVYEQDGFKFDGGPTVITAPFMIDDLFTLAGRKTEDYVTMM
PVSPFYRIFFHDQSHFDYSDDLPSMVRQIREWNPADVDGYLEFVRRAEQIFNKGFTELADQPFLKLADMLKIVPDMIKLE
SYRTVYGFVSKFVQDERLRQVLSFHPLLVGGNPFQTTSIYTLINFLERKWGVWFAKGGTGALVQALVKLFEDLGGKIELN
RDVAEISTYNGKATGVRLRDGSEIKADAVVCNSEVAWAYQNLLPSSMRKKYTDRKLARMRYSMSLVVIYFGTDRQYRGQD
GPKLAHHDIILGPRYQPLLDDIFTKKQLADDFSLYLHMPTLTDPSLAPEGCEAFYVLSPVPHLGSGTDWRQTAKPYRDRI
MNFLEDRYLPNLSKHIVSEHMITPLHFAETLNSYQGSAFSVEPILTQSAWFRPHNRSEEIPNLYFVGAGTHPGAGLPGVL
SSAKIVDDLIGA

Specific function: This enzyme converts phytoene into lycopene via the intermediaries of phytofluene, zeta-carotene and neurosporene by the introduction of four double bonds [H]

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

Organism=Homo sapiens, GI229577391, Length=539, Percent_Identity=22.4489795918367, Blast_Score=88, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR008150
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 55566; Mature: 55566

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: PS00982 PHYTOENE_DH

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIVVIGSGFGGLGAAIRLQAKGHDVTILEKRDKPGGRAYVYEQDGFKFDGGPTVITAPF
CEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCEEEEEECCCEEECCCCEEEECCH
MIDDLFTLAGRKTEDYVTMMPVSPFYRIFFHDQSHFDYSDDLPSMVRQIREWNPADVDGY
HHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHH
LEFVRRAEQIFNKGFTELADQPFLKLADMLKIVPDMIKLESYRTVYGFVSKFVQDERLRQ
HHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLSFHPLLVGGNPFQTTSIYTLINFLERKWGVWFAKGGTGALVQALVKLFEDLGGKIELN
HHHCCCEEECCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCEEEEC
RDVAEISTYNGKATGVRLRDGSEIKADAVVCNSEVAWAYQNLLPSSMRKKYTDRKLARMR
CCHHHHHCCCCCEEEEEECCCCCCEECEEEECCHHHHHHHHHCHHHHHHHHHHHHHHHHH
YSMSLVVIYFGTDRQYRGQDGPKLAHHDIILGPRYQPLLDDIFTKKQLADDFSLYLHMPT
HEEEEEEEEECCCCCCCCCCCCCEECCCEEECCCCCHHHHHHHHHHHHCCCEEEEEEECC
LTDPSLAPEGCEAFYVLSPVPHLGSGTDWRQTAKPYRDRIMNFLEDRYLPNLSKHIVSEH
CCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
MITPLHFAETLNSYQGSAFSVEPILTQSAWFRPHNRSEEIPNLYFVGAGTHPGAGLPGVL
CCCHHHHHHHHHHCCCCCEEECHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCHHH
SSAKIVDDLIGA
HHHHHHHHHHCC
>Mature Secondary Structure
MRIVVIGSGFGGLGAAIRLQAKGHDVTILEKRDKPGGRAYVYEQDGFKFDGGPTVITAPF
CEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCEEEEEECCCEEECCCCEEEECCH
MIDDLFTLAGRKTEDYVTMMPVSPFYRIFFHDQSHFDYSDDLPSMVRQIREWNPADVDGY
HHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHH
LEFVRRAEQIFNKGFTELADQPFLKLADMLKIVPDMIKLESYRTVYGFVSKFVQDERLRQ
HHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLSFHPLLVGGNPFQTTSIYTLINFLERKWGVWFAKGGTGALVQALVKLFEDLGGKIELN
HHHCCCEEECCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCEEEEC
RDVAEISTYNGKATGVRLRDGSEIKADAVVCNSEVAWAYQNLLPSSMRKKYTDRKLARMR
CCHHHHHCCCCCEEEEEECCCCCCEECEEEECCHHHHHHHHHCHHHHHHHHHHHHHHHHH
YSMSLVVIYFGTDRQYRGQDGPKLAHHDIILGPRYQPLLDDIFTKKQLADDFSLYLHMPT
HEEEEEEEEECCCCCCCCCCCCCEECCCEEECCCCCHHHHHHHHHHHHCCCEEEEEEECC
LTDPSLAPEGCEAFYVLSPVPHLGSGTDWRQTAKPYRDRIMNFLEDRYLPNLSKHIVSEH
CCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
MITPLHFAETLNSYQGSAFSVEPILTQSAWFRPHNRSEEIPNLYFVGAGTHPGAGLPGVL
CCCHHHHHHHHHHCCCCCEEECHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCHHH
SSAKIVDDLIGA
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2263648 [H]