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The map label for this gene is 159899288

Identifier: 159899288

GI number: 159899288

Start: 3525859

End: 3526470

Strand: Direct

Name: 159899288

Synonym: Haur_2769

Alternate gene names: NA

Gene position: 3525859-3526470 (Clockwise)

Preceding gene: 159899284

Following gene: 159899289

Centisome position: 55.56

GC content: 49.18

Gene sequence:

>612_bases
ATGAACAGCGAAGTTCGGAATCAAAACCATCACAGCGAAACAGTGGCATTACAACTCGTCGAACAAATTTGCCGAGGCGA
ACATGCAGCCATTTGGGAGTTGTATAGTTTGTACCACACTGAACTGTCACAGCAATGTTTAGTTTGGATGCATGGCAATC
CCCACGATGCCGATGAAGCATTAAGCCGTTTGGTGCTCAAAGCGTGGGAATCGTTGCCCCGCCATGCCTATAAAATTACC
AACGCCAAGGCTTGGCTCATGCGCATGGCCTACAACATTTGCATCGATATTCATCGTCAACAACAACGCGAACTCAAGCG
GCTTCAACCGCTCGATAGCCTGCTGGGCAATGACGACAGCATGCCACATAGCGCAACGCCCTCGCCCGAAACGGCGTTGT
TGAAGCGCGAAGTTTATGAAACGATCAATCAAGCCTTGCAAGCGTTATCGCCACGCTTGAATAGCACTTTTTCGTTGTGG
CTCTACAACGATATGTCATGCGATGCGATTGCGCAGCATCAAGGAATTTCGTTGGCCAATGTCTATAAACGCTTGCAACA
AGCCCGCGATATGTTGCAACCACAATTACGCCCAAGCACTGTTGAGGGGTAA

Upstream 100 bases:

>100_bases
CATCTCCAATAAAACGATTTTGAAACGCTGGGCCGCTATGCTGTGAATTGTAGCAGACCTTGTAGCGGATATTCAATAGA
TAGTGAATGAAGGATGAGCT

Downstream 100 bases:

>100_bases
ACGAACATAGAACATAGATGTAATGGTTTATAGCGTTAACAACGGTCAGCATGCCCTCACCCCCAACCCCTCGCCCACTG
CGGCGGGCGAGGGGAGCACC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MNSEVRNQNHHSETVALQLVEQICRGEHAAIWELYSLYHTELSQQCLVWMHGNPHDADEALSRLVLKAWESLPRHAYKIT
NAKAWLMRMAYNICIDIHRQQQRELKRLQPLDSLLGNDDSMPHSATPSPETALLKREVYETINQALQALSPRLNSTFSLW
LYNDMSCDAIAQHQGISLANVYKRLQQARDMLQPQLRPSTVEG

Sequences:

>Translated_203_residues
MNSEVRNQNHHSETVALQLVEQICRGEHAAIWELYSLYHTELSQQCLVWMHGNPHDADEALSRLVLKAWESLPRHAYKIT
NAKAWLMRMAYNICIDIHRQQQRELKRLQPLDSLLGNDDSMPHSATPSPETALLKREVYETINQALQALSPRLNSTFSLW
LYNDMSCDAIAQHQGISLANVYKRLQQARDMLQPQLRPSTVEG
>Mature_203_residues
MNSEVRNQNHHSETVALQLVEQICRGEHAAIWELYSLYHTELSQQCLVWMHGNPHDADEALSRLVLKAWESLPRHAYKIT
NAKAWLMRMAYNICIDIHRQQQRELKRLQPLDSLLGNDDSMPHSATPSPETALLKREVYETINQALQALSPRLNSTFSLW
LYNDMSCDAIAQHQGISLANVYKRLQQARDMLQPQLRPSTVEG

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23396; Mature: 23396

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSEVRNQNHHSETVALQLVEQICRGEHAAIWELYSLYHTELSQQCLVWMHGNPHDADEA
CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHH
LSRLVLKAWESLPRHAYKITNAKAWLMRMAYNICIDIHRQQQRELKRLQPLDSLLGNDDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
MPHSATPSPETALLKREVYETINQALQALSPRLNSTFSLWLYNDMSCDAIAQHQGISLAN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHCCEEEEEEECCCCHHHHHHHCCCCHHH
VYKRLQQARDMLQPQLRPSTVEG
HHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNSEVRNQNHHSETVALQLVEQICRGEHAAIWELYSLYHTELSQQCLVWMHGNPHDADEA
CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHH
LSRLVLKAWESLPRHAYKITNAKAWLMRMAYNICIDIHRQQQRELKRLQPLDSLLGNDDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
MPHSATPSPETALLKREVYETINQALQALSPRLNSTFSLWLYNDMSCDAIAQHQGISLAN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHCCEEEEEEECCCCHHHHHHHCCCCHHH
VYKRLQQARDMLQPQLRPSTVEG
HHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA