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The map label for this gene is intD [C]

Identifier: 159898089

GI number: 159898089

Start: 1816208

End: 1817338

Strand: Reverse

Name: intD [C]

Synonym: Haur_1565

Alternate gene names: 159898089

Gene position: 1817338-1816208 (Counterclockwise)

Preceding gene: 159898090

Following gene: 159898088

Centisome position: 28.63

GC content: 51.46

Gene sequence:

>1131_bases
ATGGATGAGTTAGAGTTAATTCCACATGTGAGCAACAATCCACTTGCGCCCGATTTTACGACGGTGATGAAGCAACGCAG
CGCCGTGGCTGATCAGATTTCGGCCCAACATAGCTTTATCGAATATCGCTTGCGTCAACGCCCCCAAACGATTCGCCGCC
ATAACACCGATTTGAAAATTTTTGCCGATTTTTTGGCCTCAATTGGCATTGTGATTCCGGTTGATGAACAAGAAGTGCCA
ATTCTGGCCACTGAGCCAAATGCTTGGGCCGAGATGAGCGTCGGCATCGTCACGACGTTTCGCACTTGGATGTTGAATGA
AGGCTATGCGCTTGGCTCAATTAATATTCGGCTTGGCACGGTGCGCTTGTATTGTCGCTTGGCACATCAAGCTGGCGTGT
TGAGCCTTGAGGCATGGAGCCGAATTCACACGGTTGAAGGCTATCGCCGCCGCGAAGGCGATGGCATCGATGCCCAACGT
GAAGCGACCGAAACGCCCACCCGCCTCTCGACCAAAAAAGCCGCACCGCATATTTTGGATCAAAGCCAAATTCGCGAGCT
TAAACGGGCCGCCCGCAATAATCCGATCAACCGAACACCTGAGGTTGGTTGGCGCGATTACCTGATCGTCTGTTTGTTGG
TTGATTTGGGCATGCGTTGTGGCGAGGTGGTGGTGCTCAAGTGGGAGCATATCCAAGGCAAAATTTTGCTAGTAGATCGC
CCAAAAGTTGATAAAGTGCAAAAACATCGCTTGATTGGCGATACAGCCAAGGCCTTGCGTGAATACCAAAAAGTTATTGC
CCAACCGCTTGAGCTTAAAACACCGTTGTTGGCAGCCTTTGATCACAAGGGCAATCATGTTGGCTTTGGTATTTCCGAGC
GGGCAATTCACAAACGGATTGTGCAGCTTGGCAAATTAATTGGCATCAACAATCTTGCGCCGCATGATTTGCGCCATTCG
TGGGCCACCCGCGTTGCCCAAACCAATATTCCGGTGCAAGCCCTGCGCGATGCTGGCGGCTGGACCAACCTCAACACCCC
CAATCGCTACATTGCCCAACAAGCGGTTGCCAATGATGGTGTAACGCTGCACAGCGATGATCGGCTGCTTGAGGATGATG
ACGAAGCCTAA

Upstream 100 bases:

>100_bases
CCAACGCTTAAAACCACCTCGATAAACTCGAACAAGCGTGCTTTGACAAGAGCCTAAACCATCGGCTAAACTGCACCAAC
GAGCTACAACGAGGCAGATC

Downstream 100 bases:

>100_bases
TTGCTACTTGCAGCTTTGCCTGTTTGCGTTATGATGAACAACAATTGAGTTTGGCTTGTGGAGTACCATGCAGCGTGGAT
AGCTTAATTCTGGCCTCGGC

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MDELELIPHVSNNPLAPDFTTVMKQRSAVADQISAQHSFIEYRLRQRPQTIRRHNTDLKIFADFLASIGIVIPVDEQEVP
ILATEPNAWAEMSVGIVTTFRTWMLNEGYALGSINIRLGTVRLYCRLAHQAGVLSLEAWSRIHTVEGYRRREGDGIDAQR
EATETPTRLSTKKAAPHILDQSQIRELKRAARNNPINRTPEVGWRDYLIVCLLVDLGMRCGEVVVLKWEHIQGKILLVDR
PKVDKVQKHRLIGDTAKALREYQKVIAQPLELKTPLLAAFDHKGNHVGFGISERAIHKRIVQLGKLIGINNLAPHDLRHS
WATRVAQTNIPVQALRDAGGWTNLNTPNRYIAQQAVANDGVTLHSDDRLLEDDDEA

Sequences:

>Translated_376_residues
MDELELIPHVSNNPLAPDFTTVMKQRSAVADQISAQHSFIEYRLRQRPQTIRRHNTDLKIFADFLASIGIVIPVDEQEVP
ILATEPNAWAEMSVGIVTTFRTWMLNEGYALGSINIRLGTVRLYCRLAHQAGVLSLEAWSRIHTVEGYRRREGDGIDAQR
EATETPTRLSTKKAAPHILDQSQIRELKRAARNNPINRTPEVGWRDYLIVCLLVDLGMRCGEVVVLKWEHIQGKILLVDR
PKVDKVQKHRLIGDTAKALREYQKVIAQPLELKTPLLAAFDHKGNHVGFGISERAIHKRIVQLGKLIGINNLAPHDLRHS
WATRVAQTNIPVQALRDAGGWTNLNTPNRYIAQQAVANDGVTLHSDDRLLEDDDEA
>Mature_376_residues
MDELELIPHVSNNPLAPDFTTVMKQRSAVADQISAQHSFIEYRLRQRPQTIRRHNTDLKIFADFLASIGIVIPVDEQEVP
ILATEPNAWAEMSVGIVTTFRTWMLNEGYALGSINIRLGTVRLYCRLAHQAGVLSLEAWSRIHTVEGYRRREGDGIDAQR
EATETPTRLSTKKAAPHILDQSQIRELKRAARNNPINRTPEVGWRDYLIVCLLVDLGMRCGEVVVLKWEHIQGKILLVDR
PKVDKVQKHRLIGDTAKALREYQKVIAQPLELKTPLLAAFDHKGNHVGFGISERAIHKRIVQLGKLIGINNLAPHDLRHS
WATRVAQTNIPVQALRDAGGWTNLNTPNRYIAQQAVANDGVTLHSDDRLLEDDDEA

Specific function: Integrase From The Cryptic Lambdoic Prophage Dlp12. Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From Th

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42428; Mature: 42428

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDELELIPHVSNNPLAPDFTTVMKQRSAVADQISAQHSFIEYRLRQRPQTIRRHNTDLKI
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHH
FADFLASIGIVIPVDEQEVPILATEPNAWAEMSVGIVTTFRTWMLNEGYALGSINIRLGT
HHHHHHHCCEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEH
VRLYCRLAHQAGVLSLEAWSRIHTVEGYRRREGDGIDAQREATETPTRLSTKKAAPHILD
HHHHHHHHHHCCEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHCCCHHCC
QSQIRELKRAARNNPINRTPEVGWRDYLIVCLLVDLGMRCGEVVVLKWEHIQGKILLVDR
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEC
PKVDKVQKHRLIGDTAKALREYQKVIAQPLELKTPLLAAFDHKGNHVGFGISERAIHKRI
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHEECCCCCEECCCCHHHHHHHHH
VQLGKLIGINNLAPHDLRHSWATRVAQTNIPVQALRDAGGWTNLNTPNRYIAQQAVANDG
HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCC
VTLHSDDRLLEDDDEA
CEEECCCCCCCCCCCC
>Mature Secondary Structure
MDELELIPHVSNNPLAPDFTTVMKQRSAVADQISAQHSFIEYRLRQRPQTIRRHNTDLKI
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHH
FADFLASIGIVIPVDEQEVPILATEPNAWAEMSVGIVTTFRTWMLNEGYALGSINIRLGT
HHHHHHHCCEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEH
VRLYCRLAHQAGVLSLEAWSRIHTVEGYRRREGDGIDAQREATETPTRLSTKKAAPHILD
HHHHHHHHHHCCEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHCCCHHCC
QSQIRELKRAARNNPINRTPEVGWRDYLIVCLLVDLGMRCGEVVVLKWEHIQGKILLVDR
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEC
PKVDKVQKHRLIGDTAKALREYQKVIAQPLELKTPLLAAFDHKGNHVGFGISERAIHKRI
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHEECCCCCEECCCCHHHHHHHHH
VQLGKLIGINNLAPHDLRHSWATRVAQTNIPVQALRDAGGWTNLNTPNRYIAQQAVANDG
HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCC
VTLHSDDRLLEDDDEA
CEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA