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The map label for this gene is ybaK [C]

Identifier: 159897534

GI number: 159897534

Start: 1150275

End: 1150751

Strand: Reverse

Name: ybaK [C]

Synonym: Haur_1005

Alternate gene names: 159897534

Gene position: 1150751-1150275 (Counterclockwise)

Preceding gene: 159897537

Following gene: 159897533

Centisome position: 18.13

GC content: 48.64

Gene sequence:

>477_bases
ATGGGAACTCGAACGCGGGCGACTGATGTGATGTGTCGCGTGACTAGCGATTTTGAATTGTTGAGTTTTGAGGCAACCGA
ATTTACTGCCGAGGAAGCCGCCGAAAAGCTCAGCTTACCATTAAATATGTTGTTTAAAACTTTATTGGCCAAAGGTGAGA
AAAAAGGCTATGTTTTGGCGGTTGTGCCAAGTGATCATCGGCTAAGCCTCAAGAAATTGGCCGATGCGCTTGGCGATAAA
CGGGTTGAGATGGCTCCAATCGAGGAATTAACCCGCTTGACTGGCTATCTCAAAGGTGGGGTTTCGCCTTTGGGTACACG
CCGCGCAATGCCAGTTGTCCTCGATTTTAGTGCCTTTCAGCATGCACGAATTAGCTTGAGTGCTGGTCAACGTGGCTTAC
AAATGTTGGTAGCGCCAAGCCATTTGCAACAAGCCGCCAAAGCCCTGGTTGCCGATATTAGCGACAACGATAGCTAA

Upstream 100 bases:

>100_bases
TTTTAGCATAGATTATTGGCAGCAAAATAAGTCTAACGATGGGTAGATGTTGGGCGATTGGCTGATTATAATTAAGTCTG
TTTATTGATGGAGGCCAATC

Downstream 100 bases:

>100_bases
AACAGCTCTTAACAATGACAAATATTGACACATAGGCGTGTTAGACTGACAATCAGTAACGACAAACCTTGCAAGCTCTT
TGCCCGGATTGTCGAGCGAT

Product: YbaK/prolyl-tRNA synthetase associated region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MGTRTRATDVMCRVTSDFELLSFEATEFTAEEAAEKLSLPLNMLFKTLLAKGEKKGYVLAVVPSDHRLSLKKLADALGDK
RVEMAPIEELTRLTGYLKGGVSPLGTRRAMPVVLDFSAFQHARISLSAGQRGLQMLVAPSHLQQAAKALVADISDNDS

Sequences:

>Translated_158_residues
MGTRTRATDVMCRVTSDFELLSFEATEFTAEEAAEKLSLPLNMLFKTLLAKGEKKGYVLAVVPSDHRLSLKKLADALGDK
RVEMAPIEELTRLTGYLKGGVSPLGTRRAMPVVLDFSAFQHARISLSAGQRGLQMLVAPSHLQQAAKALVADISDNDS
>Mature_157_residues
GTRTRATDVMCRVTSDFELLSFEATEFTAEEAAEKLSLPLNMLFKTLLAKGEKKGYVLAVVPSDHRLSLKKLADALGDKR
VEMAPIEELTRLTGYLKGGVSPLGTRRAMPVVLDFSAFQHARISLSAGQRGLQMLVAPSHLQQAAKALVADISDNDS

Specific function: Affects the expression of the receptor, named binding substance, that mediates mating aggregate formation. Could be a regulatory protein that suppresses the function or expression of ebsA and/or ebsMB [H]

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=159, Percent_Identity=37.7358490566038, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17161; Mature: 17030

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTRTRATDVMCRVTSDFELLSFEATEFTAEEAAEKLSLPLNMLFKTLLAKGEKKGYVLA
CCCCCCHHHEEEEECCCCEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEE
VVPSDHRLSLKKLADALGDKRVEMAPIEELTRLTGYLKGGVSPLGTRRAMPVVLDFSAFQ
EECCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHH
HARISLSAGQRGLQMLVAPSHLQQAAKALVADISDNDS
HHEEEECCCCCCCEEEECHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
GTRTRATDVMCRVTSDFELLSFEATEFTAEEAAEKLSLPLNMLFKTLLAKGEKKGYVLA
CCCCCHHHEEEEECCCCEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEE
VVPSDHRLSLKKLADALGDKRVEMAPIEELTRLTGYLKGGVSPLGTRRAMPVVLDFSAFQ
EECCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHH
HARISLSAGQRGLQMLVAPSHLQQAAKALVADISDNDS
HHEEEECCCCCCCEEEECHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8226689; 12663927 [H]