| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is yebA [H]
Identifier: 159897493
GI number: 159897493
Start: 1104270
End: 1106672
Strand: Direct
Name: yebA [H]
Synonym: Haur_0964
Alternate gene names: 159897493
Gene position: 1104270-1106672 (Clockwise)
Preceding gene: 159897492
Following gene: 159897494
Centisome position: 17.4
GC content: 51.89
Gene sequence:
>2403_bases ATGCTGCAACGAATTCGCGCTTTTGTTCAACCAGGCTATGGGTTATTAACCTGGACGCTTGCCAGCCTGATGGCCTTGTT GGTTGTGACCAATGTGGTCGAATCGGAATGGGTCGAAGGTTTTGAACGCATGCGGATTGTGGCACTCGGCGGCTTGATTG TGGCAGCCTTGTTTGCGCGGTGGCAAGCCTTGCCCTCGTTTTTGGCCCATGTACTTAGTTTTTTCATGGGCTTGGCATGG TCAATTCGCTTTTTACCGCTTGATGAACGGCTCGATAGCCAAGTTGATCGCTGGACGGATATGCTGATTCGGGGGATTGC AGCAATTCGCGCGGTTAAAACTGGCGAGCAAATTGAAGATTATTATCTCTTTTCGTTGGCAGGCCTACTACTGGCTTGGA TTTTTGCCTATAGCACGATTTGGCTGCTGTTTCGTTGGAACTGGAATTGGCGTTTGGTGCTGCTGAATGGTAGCCTGTTG ATGGCCAATTTGACCTATGCGATTCCCAAACCAATTGCCTCGTTCTGGCTGTTTTTACTGGTTGCCCTGCTCTTTTTGGT CACGCAGACCTATGCCCAACGCCAAAATGGCTGGGATGCTGGCTTGCTTGAGCAACAAGAATGGCTTTCGCTGCGCTATT TGTGGGCGGGAGTTTTAGCCTGTTTTAGTTTGGTGTTTATGGCGGCCTTGATGCCTGCCAATATTACCAATGCCCAATTG CGGATTTTTGGCGAAAATCTGAGCCGCCCGATCGATTTCTTTCTGCCTGATAATGGGGCTGAACGCGCCGATCGTGGGCC GCAAGGTGTGGGGAATGTGGTCGTGCCCAATGGTAGTGGGGCTAGTTTTTCCAATAATACGGTCAACCTTGGCGGGGCAC GCTCAGCCACCAACGAAGTCGTGCTTGAAGTCAAAGCACCATCAGCCGAGTATTGGCGCTCGAATGCTTGGGATTTATAC ACAGGCAAAGGTTGGCAAAACACCACTGGCGAGTTGGCTTGGCAAGTGCGCCAAACTCCAACCCGCCGCGAAGCCTTGAC CCCAATTAATCCCGAAGATACGCTGACCCAGCTTGATACAACTGGTCGTGTGCCATTCACCCAAACGATTAAATTGATGC AAACCCGTGGCGATCAGCAATTGCCTGCCGCAACCTCGCCGCTGACTTGGAGCGTGCCAGTCTTGGTGCAACACTCATTT ATCGTTTCGGATACCGAAAATACCTTGCCCAACTTTGCCGATAGTGCGATCTATTTCAATCAAGGCCCAGCCAACGAAGG CTTTGAATACAGCGTAGTTTCGTTGATCAGCAATATTGATAAGCAAAGTTTGCGTGGAGCAGCGACCGATTATCCGGCTT GGTTGCAGCGCTATGTTCAGTTGCCCGATACGCAATCGATGCGCAATATTGCTGGTTTATCGCGCCAATTAACGACTGCG GCAGGAGCTGAAACCGCCTATGATAAAGCGGTGGCAATCGAACGTTATTTGCGCGAATTTCCCTATGATGATCAAATTCC TGCGCCGCCTGCTGATGCCGACCCGATCGAGAATTTCTTGTTCAATCTACGGCGGGGCTACTGCGATTATTTTGCTGGCT CGATGGTGCTGATGTTGCGGGCGCAAGGGATTCCAGCGCGTTGGGTTCAGGGCTATGCCACCGGCGATTATGATGCTGAT CGCCAAGTCTATGTCGTGCGTGATACGATTGCCCATAGCTGGCCCGAAGTCTATTTTATGGGCTATGGCTGGATTCGCTT CGAGCCAACCCCAGCGGGCTATGTAACTGTGCCAATTCGGCCTGATGGCCCACCCCAAGCCATAGATAACAGCGAAAACC CTGATGATATTGGGCCAAATGCGGGGATTGTTGATCAACCAACTACCAATTTTGATGCCCTGCAAGATTTGCGCGAAAAC TTCCAAACCACGCCAATTCCAACGGTCGAACCTCAAGCGTTGCCAGCTGAAGATGTAGCGGCGCAGGTTGTCGAAAGCAG CCCATTCTGGCGTTGGCTGGCCATTATTTGTGGAGTGATTGGCTTAATTATTTTGTTGCTATGGTTGCTGTTGCAACGTG AATTTCGTGGTTTGCGACCTGCGGCACGGGCCTATGGGTTTATTGGCTTATTGGCGCGTTGGGCTGGTTTAGAGCAGCGA CCCGAACGCACACCCCAAGAGTTTGCCTGCGATTTGGCCAAAGAAATGCCTGGCCAGCGCCGAACTCTGCGGCGCTTGGC CGATGCCTATAGTGCTGAGCAATATGGCAGCCAAGTGCGGCTTGACCCTGAGGAAATTGAAAATGATCGAGCTATGGTCA GTCGCACGCTTTGGCCGCGCTCGATCAGCCGTGGTTGGCGCTCGATTTTGCAACAAATCTTGCATCCGCGCTGGCGACGC TAG
Upstream 100 bases:
>100_bases GGTTGCTCGCCTAAACCAATGCTCATCAACTGCTAACCCAGCAGCGCCGAGAGCCATTTTAAAATAGAAGTAGCCTGCCT GCTAGATTGAGGAATCCCCT
Downstream 100 bases:
>100_bases CTGGCCCAAATCTTGCTTTACTTAGTTTTGGCACAACCCGTAGCCGTGGCAGATCACTCGCGGGGGTGAGCTACCACGGC ATTAACTAGACATAGGATCA
Product: transglutaminase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 800; Mature: 800
Protein sequence:
>800_residues MLQRIRAFVQPGYGLLTWTLASLMALLVVTNVVESEWVEGFERMRIVALGGLIVAALFARWQALPSFLAHVLSFFMGLAW SIRFLPLDERLDSQVDRWTDMLIRGIAAIRAVKTGEQIEDYYLFSLAGLLLAWIFAYSTIWLLFRWNWNWRLVLLNGSLL MANLTYAIPKPIASFWLFLLVALLFLVTQTYAQRQNGWDAGLLEQQEWLSLRYLWAGVLACFSLVFMAALMPANITNAQL RIFGENLSRPIDFFLPDNGAERADRGPQGVGNVVVPNGSGASFSNNTVNLGGARSATNEVVLEVKAPSAEYWRSNAWDLY TGKGWQNTTGELAWQVRQTPTRREALTPINPEDTLTQLDTTGRVPFTQTIKLMQTRGDQQLPAATSPLTWSVPVLVQHSF IVSDTENTLPNFADSAIYFNQGPANEGFEYSVVSLISNIDKQSLRGAATDYPAWLQRYVQLPDTQSMRNIAGLSRQLTTA AGAETAYDKAVAIERYLREFPYDDQIPAPPADADPIENFLFNLRRGYCDYFAGSMVLMLRAQGIPARWVQGYATGDYDAD RQVYVVRDTIAHSWPEVYFMGYGWIRFEPTPAGYVTVPIRPDGPPQAIDNSENPDDIGPNAGIVDQPTTNFDALQDLREN FQTTPIPTVEPQALPAEDVAAQVVESSPFWRWLAIICGVIGLIILLLWLLLQREFRGLRPAARAYGFIGLLARWAGLEQR PERTPQEFACDLAKEMPGQRRTLRRLADAYSAEQYGSQVRLDPEEIENDRAMVSRTLWPRSISRGWRSILQQILHPRWRR
Sequences:
>Translated_800_residues MLQRIRAFVQPGYGLLTWTLASLMALLVVTNVVESEWVEGFERMRIVALGGLIVAALFARWQALPSFLAHVLSFFMGLAW SIRFLPLDERLDSQVDRWTDMLIRGIAAIRAVKTGEQIEDYYLFSLAGLLLAWIFAYSTIWLLFRWNWNWRLVLLNGSLL MANLTYAIPKPIASFWLFLLVALLFLVTQTYAQRQNGWDAGLLEQQEWLSLRYLWAGVLACFSLVFMAALMPANITNAQL RIFGENLSRPIDFFLPDNGAERADRGPQGVGNVVVPNGSGASFSNNTVNLGGARSATNEVVLEVKAPSAEYWRSNAWDLY TGKGWQNTTGELAWQVRQTPTRREALTPINPEDTLTQLDTTGRVPFTQTIKLMQTRGDQQLPAATSPLTWSVPVLVQHSF IVSDTENTLPNFADSAIYFNQGPANEGFEYSVVSLISNIDKQSLRGAATDYPAWLQRYVQLPDTQSMRNIAGLSRQLTTA AGAETAYDKAVAIERYLREFPYDDQIPAPPADADPIENFLFNLRRGYCDYFAGSMVLMLRAQGIPARWVQGYATGDYDAD RQVYVVRDTIAHSWPEVYFMGYGWIRFEPTPAGYVTVPIRPDGPPQAIDNSENPDDIGPNAGIVDQPTTNFDALQDLREN FQTTPIPTVEPQALPAEDVAAQVVESSPFWRWLAIICGVIGLIILLLWLLLQREFRGLRPAARAYGFIGLLARWAGLEQR PERTPQEFACDLAKEMPGQRRTLRRLADAYSAEQYGSQVRLDPEEIENDRAMVSRTLWPRSISRGWRSILQQILHPRWRR >Mature_800_residues MLQRIRAFVQPGYGLLTWTLASLMALLVVTNVVESEWVEGFERMRIVALGGLIVAALFARWQALPSFLAHVLSFFMGLAW SIRFLPLDERLDSQVDRWTDMLIRGIAAIRAVKTGEQIEDYYLFSLAGLLLAWIFAYSTIWLLFRWNWNWRLVLLNGSLL MANLTYAIPKPIASFWLFLLVALLFLVTQTYAQRQNGWDAGLLEQQEWLSLRYLWAGVLACFSLVFMAALMPANITNAQL RIFGENLSRPIDFFLPDNGAERADRGPQGVGNVVVPNGSGASFSNNTVNLGGARSATNEVVLEVKAPSAEYWRSNAWDLY TGKGWQNTTGELAWQVRQTPTRREALTPINPEDTLTQLDTTGRVPFTQTIKLMQTRGDQQLPAATSPLTWSVPVLVQHSF IVSDTENTLPNFADSAIYFNQGPANEGFEYSVVSLISNIDKQSLRGAATDYPAWLQRYVQLPDTQSMRNIAGLSRQLTTA AGAETAYDKAVAIERYLREFPYDDQIPAPPADADPIENFLFNLRRGYCDYFAGSMVLMLRAQGIPARWVQGYATGDYDAD RQVYVVRDTIAHSWPEVYFMGYGWIRFEPTPAGYVTVPIRPDGPPQAIDNSENPDDIGPNAGIVDQPTTNFDALQDLREN FQTTPIPTVEPQALPAEDVAAQVVESSPFWRWLAIICGVIGLIILLLWLLLQREFRGLRPAARAYGFIGLLARWAGLEQR PERTPQEFACDLAKEMPGQRRTLRRLADAYSAEQYGSQVRLDPEEIENDRAMVSRTLWPRSISRGWRSILQQILHPRWRR
Specific function: Unknown
COG id: COG1305
COG function: function code E; Transglutaminase-like enzymes, putative cysteine proteases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002931 [H]
Pfam domain/function: PF01841 Transglut_core [H]
EC number: NA
Molecular weight: Translated: 90309; Mature: 90309
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQRIRAFVQPGYGLLTWTLASLMALLVVTNVVESEWVEGFERMRIVALGGLIVAALFAR CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WQALPSFLAHVLSFFMGLAWSIRFLPLDERLDSQVDRWTDMLIRGIAAIRAVKTGEQIED HHHHHHHHHHHHHHHHHHHHEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH YYLFSLAGLLLAWIFAYSTIWLLFRWNWNWRLVLLNGSLLMANLTYAIPKPIASFWLFLL HHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEECCEEEEHHHHHCCHHHHHHHHHHH VALLFLVTQTYAQRQNGWDAGLLEQQEWLSLRYLWAGVLACFSLVFMAALMPANITNAQL HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE RIFGENLSRPIDFFLPDNGAERADRGPQGVGNVVVPNGSGASFSNNTVNLGGARSATNEV EEEECCCCCCEEEEECCCCCHHCCCCCCCCCCEEEECCCCCCCCCCCEECCCCCCCCCEE VLEVKAPSAEYWRSNAWDLYTGKGWQNTTGELAWQVRQTPTRREALTPINPEDTLTQLDT EEEEECCCHHHHCCCCCEEEECCCCCCCCHHHHEEHHCCCCHHHCCCCCCCHHHHHHHCC TGRVPFTQTIKLMQTRGDQQLPAATSPLTWSVPVLVQHSFIVSDTENTLPNFADSAIYFN CCCCCHHHHHHHHHHCCCCCCCCCCCCCEEECHHHHEEEEEEECCHHCCCCCCCCCEEEC QGPANEGFEYSVVSLISNIDKQSLRGAATDYPAWLQRYVQLPDTQSMRNIAGLSRQLTTA CCCCCCCCCHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH AGAETAYDKAVAIERYLREFPYDDQIPAPPADADPIENFLFNLRRGYCDYFAGSMVLMLR CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AQGIPARWVQGYATGDYDADRQVYVVRDTIAHSWPEVYFMGYGWIRFEPTPAGYVTVPIR CCCCCHHHHCCCCCCCCCCCCEEEEEEHHHHCCCCCEEEEECEEEEECCCCCCEEEEEEC PDGPPQAIDNSENPDDIGPNAGIVDQPTTNFDALQDLRENFQTTPIPTVEPQALPAEDVA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH AQVVESSPFWRWLAIICGVIGLIILLLWLLLQREFRGLRPAARAYGFIGLLARWAGLEQR HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC PERTPQEFACDLAKEMPGQRRTLRRLADAYSAEQYGSQVRLDPEEIENDRAMVSRTLWPR CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHCCHH SISRGWRSILQQILHPRWRR HHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MLQRIRAFVQPGYGLLTWTLASLMALLVVTNVVESEWVEGFERMRIVALGGLIVAALFAR CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WQALPSFLAHVLSFFMGLAWSIRFLPLDERLDSQVDRWTDMLIRGIAAIRAVKTGEQIED HHHHHHHHHHHHHHHHHHHHEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH YYLFSLAGLLLAWIFAYSTIWLLFRWNWNWRLVLLNGSLLMANLTYAIPKPIASFWLFLL HHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEECCEEEEHHHHHCCHHHHHHHHHHH VALLFLVTQTYAQRQNGWDAGLLEQQEWLSLRYLWAGVLACFSLVFMAALMPANITNAQL HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE RIFGENLSRPIDFFLPDNGAERADRGPQGVGNVVVPNGSGASFSNNTVNLGGARSATNEV EEEECCCCCCEEEEECCCCCHHCCCCCCCCCCEEEECCCCCCCCCCCEECCCCCCCCCEE VLEVKAPSAEYWRSNAWDLYTGKGWQNTTGELAWQVRQTPTRREALTPINPEDTLTQLDT EEEEECCCHHHHCCCCCEEEECCCCCCCCHHHHEEHHCCCCHHHCCCCCCCHHHHHHHCC TGRVPFTQTIKLMQTRGDQQLPAATSPLTWSVPVLVQHSFIVSDTENTLPNFADSAIYFN CCCCCHHHHHHHHHHCCCCCCCCCCCCCEEECHHHHEEEEEEECCHHCCCCCCCCCEEEC QGPANEGFEYSVVSLISNIDKQSLRGAATDYPAWLQRYVQLPDTQSMRNIAGLSRQLTTA CCCCCCCCCHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH AGAETAYDKAVAIERYLREFPYDDQIPAPPADADPIENFLFNLRRGYCDYFAGSMVLMLR CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AQGIPARWVQGYATGDYDADRQVYVVRDTIAHSWPEVYFMGYGWIRFEPTPAGYVTVPIR CCCCCHHHHCCCCCCCCCCCCEEEEEEHHHHCCCCCEEEEECEEEEECCCCCCEEEEEEC PDGPPQAIDNSENPDDIGPNAGIVDQPTTNFDALQDLRENFQTTPIPTVEPQALPAEDVA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH AQVVESSPFWRWLAIICGVIGLIILLLWLLLQREFRGLRPAARAYGFIGLLARWAGLEQR HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC PERTPQEFACDLAKEMPGQRRTLRRLADAYSAEQYGSQVRLDPEEIENDRAMVSRTLWPR CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHCCHH SISRGWRSILQQILHPRWRR HHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969499; 9384377 [H]