| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159897462
Identifier: 159897462
GI number: 159897462
Start: 1066650
End: 1067015
Strand: Reverse
Name: 159897462
Synonym: Haur_0933
Alternate gene names: NA
Gene position: 1067015-1066650 (Counterclockwise)
Preceding gene: 159897463
Following gene: 159897461
Centisome position: 16.81
GC content: 52.46
Gene sequence:
>366_bases ATGAGCAAGACACTGCGTGATGTGCTAAATCAATTTCGCACGCTGGAAAACGTAGAACTCGCTGCGGTTGCAGGAACCGA TGGTCTTTTAATTGAAAGCTCAGCGCGTTCTGGGGTTGATGTTGACGCGATCTGCGCGGTAGCATCGAATGGCTTGGCCA TGGCTGAGGCGCTCGGTCGGGAAATCAACAAAGGTGGCTCGGTGCAAACTGTGCTCGAATACGATCAAGGCTTGATCCTA CTCGAACCAGTCAGCAGCGATGCTATGCTGGTCGTGCTAACCAGTTCACGCGAACTGTTAGGCAAGTTACGCTATATGGC TCAAGCCCATCGTGCCAACTTAGATGCAGCCTTGGCCGCGATCTAA
Upstream 100 bases:
>100_bases CCGCAGCCGCCTCAAACGGTTGCGAGCGCGACCAACGGCACGATTACGGCGACGATCCTCGGATTCTTCATTCTCGTAGT TCGAAGGAGAGCACACCTCC
Downstream 100 bases:
>100_bases GCAGCTTAGCAGGCTATTTTTGGCAAAATCGTCAAGAAAGCATGTTATATTGGAACGTCCTGTGCTATAATGAGCCGTAA TCGCTCGTCTTTGCTTGGAA
Product: roadblock/LC7 family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 121; Mature: 120
Protein sequence:
>121_residues MSKTLRDVLNQFRTLENVELAAVAGTDGLLIESSARSGVDVDAICAVASNGLAMAEALGREINKGGSVQTVLEYDQGLIL LEPVSSDAMLVVLTSSRELLGKLRYMAQAHRANLDAALAAI
Sequences:
>Translated_121_residues MSKTLRDVLNQFRTLENVELAAVAGTDGLLIESSARSGVDVDAICAVASNGLAMAEALGREINKGGSVQTVLEYDQGLIL LEPVSSDAMLVVLTSSRELLGKLRYMAQAHRANLDAALAAI >Mature_120_residues SKTLRDVLNQFRTLENVELAAVAGTDGLLIESSARSGVDVDAICAVASNGLAMAEALGREINKGGSVQTVLEYDQGLILL EPVSSDAMLVVLTSSRELLGKLRYMAQAHRANLDAALAAI
Specific function: Unknown
COG id: COG2018
COG function: function code R; Uncharacterized distant relative of homeotic protein bithoraxoid
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12729; Mature: 12598
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKTLRDVLNQFRTLENVELAAVAGTDGLLIESSARSGVDVDAICAVASNGLAMAEALGR CCHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHH EINKGGSVQTVLEYDQGLILLEPVSSDAMLVVLTSSRELLGKLRYMAQAHRANLDAALAA HHCCCCCEEEEEECCCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHC I C >Mature Secondary Structure SKTLRDVLNQFRTLENVELAAVAGTDGLLIESSARSGVDVDAICAVASNGLAMAEALGR CHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHH EINKGGSVQTVLEYDQGLILLEPVSSDAMLVVLTSSRELLGKLRYMAQAHRANLDAALAA HHCCCCCEEEEEECCCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHC I C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA