| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159897385
Identifier: 159897385
GI number: 159897385
Start: 969042
End: 970256
Strand: Reverse
Name: 159897385
Synonym: Haur_0856
Alternate gene names: NA
Gene position: 970256-969042 (Counterclockwise)
Preceding gene: 159897388
Following gene: 159897384
Centisome position: 15.29
GC content: 52.18
Gene sequence:
>1215_bases ATGCGCCGTTTCGCCACAGTCTTTGCGCTGTGTAGCATTTTAAGCTTTACTTTGCCCTCAATTGCTGCCGCTTGTGGAGC GTTGATTCCCGCCGACGATCAGATTCGCCAAGCTGGCCTCAACGTGATTTTTGCTGTCGATGGCCAAGCCAACCAAACCA CCGCCTATATTCAAATTAACTATGTTGGCGATCCCGCTGAGTTTGCTTGGATCTTGCCAGTGCCCAGTAATCCCAAGGTC GATGTGATTGAAGCTAGCACGTTTGCTGAATTACATACTCTGACCGATCCACGGGTGACCTTCCCTTCGCCACCTGAATG TTTTCCGGCGATCGTTGGAGCAGCACCCGATGGCGCTGGTCAAGCACCAAATGTGTTGCAACAAGGTCAAGTCGGCCCCT ACGACTACAGCGTAATTGAGGATCGTGATCCAGCGGCGCTTGAAACATGGCTCAAAACCAACGGCTATCAAACTCCAGCT GGTTTAGAAGCTGCCCTAAAACCCTATACCGAAGCTGGCATGCCGTTGATCGCCATGAAACTTAAGCCTGGCGCTGATAC CAACGATATTCAACCGGTCGCGATCAGCTTCACGGGCACAACCCCAATGCTGCCGTTGCGCTTAGCAGCCTTGAGCAGCG AACCCAAAACTCCAATTACGGTCTGGATTTTTGGTGAAGCTCAGGCAATTCCAACCAATACTGAACGCTTTACCATGCGC GAAAACGATTTGGCGCTGACGGCCTACGATGGCTCGAATAATTATAAAGAATTGCGCAGCGGCGTGTTGGCAAGCGTAGC GGGCAAAGGCTTTTTGACCGAGTACGCCCAACAAAGCAAATTTCTCAACCCTCAAGATAGCCTGCTGAAGGAATTGACCA GCAAATATGCCTTCTTGACGCGGTTGTATGCTGAAATTTCACCTGAAGAGATGCTGTTTGATCCAACCTTTGGTTATAGC CCTGATCTGCCACCACTTTCCAACAACATCGATTTGACCTATCGCGCCGAGCCATACGATTGCGAAACTGCGACCTTGCA CACGGTGCGTCGCCAGCAATACGATGCGGCCAAAGGCAATCGCTCATCCGAAGAAGAAGCGACTGCCAATTTGCGTCGTG GCCCCTTGCGCATCGGCACACTGTTGGTGATTGGCGTAACCATGGGTTCGATCTGGCTCTTGGCTCGTCGGCCCAAACGT CGCCCCAGCGCCTAG
Upstream 100 bases:
>100_bases AACAACAATGTCCATCACAAGGATCAGGCCTTGGAAGGAATAACAGCATGCAACGCGGCGTGTTATGATTGAGCTTGCAT ACATTTCAAGGAGGATTTCC
Downstream 100 bases:
>100_bases AACTACGCTCAACCCCGCTCTCACTGCGGCAGGAGTGGGGCATTCCAAACGTCGTGCTGGGATGCTTCCCCCTCGCTCGG CGGGAGAGGGGGTCAGGGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 404; Mature: 404
Protein sequence:
>404_residues MRRFATVFALCSILSFTLPSIAAACGALIPADDQIRQAGLNVIFAVDGQANQTTAYIQINYVGDPAEFAWILPVPSNPKV DVIEASTFAELHTLTDPRVTFPSPPECFPAIVGAAPDGAGQAPNVLQQGQVGPYDYSVIEDRDPAALETWLKTNGYQTPA GLEAALKPYTEAGMPLIAMKLKPGADTNDIQPVAISFTGTTPMLPLRLAALSSEPKTPITVWIFGEAQAIPTNTERFTMR ENDLALTAYDGSNNYKELRSGVLASVAGKGFLTEYAQQSKFLNPQDSLLKELTSKYAFLTRLYAEISPEEMLFDPTFGYS PDLPPLSNNIDLTYRAEPYDCETATLHTVRRQQYDAAKGNRSSEEEATANLRRGPLRIGTLLVIGVTMGSIWLLARRPKR RPSA
Sequences:
>Translated_404_residues MRRFATVFALCSILSFTLPSIAAACGALIPADDQIRQAGLNVIFAVDGQANQTTAYIQINYVGDPAEFAWILPVPSNPKV DVIEASTFAELHTLTDPRVTFPSPPECFPAIVGAAPDGAGQAPNVLQQGQVGPYDYSVIEDRDPAALETWLKTNGYQTPA GLEAALKPYTEAGMPLIAMKLKPGADTNDIQPVAISFTGTTPMLPLRLAALSSEPKTPITVWIFGEAQAIPTNTERFTMR ENDLALTAYDGSNNYKELRSGVLASVAGKGFLTEYAQQSKFLNPQDSLLKELTSKYAFLTRLYAEISPEEMLFDPTFGYS PDLPPLSNNIDLTYRAEPYDCETATLHTVRRQQYDAAKGNRSSEEEATANLRRGPLRIGTLLVIGVTMGSIWLLARRPKR RPSA >Mature_404_residues MRRFATVFALCSILSFTLPSIAAACGALIPADDQIRQAGLNVIFAVDGQANQTTAYIQINYVGDPAEFAWILPVPSNPKV DVIEASTFAELHTLTDPRVTFPSPPECFPAIVGAAPDGAGQAPNVLQQGQVGPYDYSVIEDRDPAALETWLKTNGYQTPA GLEAALKPYTEAGMPLIAMKLKPGADTNDIQPVAISFTGTTPMLPLRLAALSSEPKTPITVWIFGEAQAIPTNTERFTMR ENDLALTAYDGSNNYKELRSGVLASVAGKGFLTEYAQQSKFLNPQDSLLKELTSKYAFLTRLYAEISPEEMLFDPTFGYS PDLPPLSNNIDLTYRAEPYDCETATLHTVRRQQYDAAKGNRSSEEEATANLRRGPLRIGTLLVIGVTMGSIWLLARRPKR RPSA
Specific function: Unknown
COG id: COG4402
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43981; Mature: 43981
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRFATVFALCSILSFTLPSIAAACGALIPADDQIRQAGLNVIFAVDGQANQTTAYIQIN CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEEECCCCCCEEEEEEEE YVGDPAEFAWILPVPSNPKVDVIEASTFAELHTLTDPRVTFPSPPECFPAIVGAAPDGAG EECCCCCEEEEEECCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCC QAPNVLQQGQVGPYDYSVIEDRDPAALETWLKTNGYQTPAGLEAALKPYTEAGMPLIAMK CCCCHHHCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCCHHHHHCCHHHCCCCEEEEE LKPGADTNDIQPVAISFTGTTPMLPLRLAALSSEPKTPITVWIFGEAQAIPTNTERFTMR ECCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEECCEECCCCCCEEEEE ENDLALTAYDGSNNYKELRSGVLASVAGKGFLTEYAQQSKFLNPQDSLLKELTSKYAFLT CCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH RLYAEISPEEMLFDPTFGYSPDLPPLSNNIDLTYRAEPYDCETATLHTVRRQQYDAAKGN HHHHHCCHHHEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC RSSEEEATANLRRGPLRIGTLLVIGVTMGSIWLLARRPKRRPSA CCCHHHHHHHHHCCCEEHHHHEEEHHHHHHEEEEECCCCCCCCC >Mature Secondary Structure MRRFATVFALCSILSFTLPSIAAACGALIPADDQIRQAGLNVIFAVDGQANQTTAYIQIN CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEEECCCCCCEEEEEEEE YVGDPAEFAWILPVPSNPKVDVIEASTFAELHTLTDPRVTFPSPPECFPAIVGAAPDGAG EECCCCCEEEEEECCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCC QAPNVLQQGQVGPYDYSVIEDRDPAALETWLKTNGYQTPAGLEAALKPYTEAGMPLIAMK CCCCHHHCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCCHHHHHCCHHHCCCCEEEEE LKPGADTNDIQPVAISFTGTTPMLPLRLAALSSEPKTPITVWIFGEAQAIPTNTERFTMR ECCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEECCEECCCCCCEEEEE ENDLALTAYDGSNNYKELRSGVLASVAGKGFLTEYAQQSKFLNPQDSLLKELTSKYAFLT CCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH RLYAEISPEEMLFDPTFGYSPDLPPLSNNIDLTYRAEPYDCETATLHTVRRQQYDAAKGN HHHHHCCHHHEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC RSSEEEATANLRRGPLRIGTLLVIGVTMGSIWLLARRPKRRPSA CCCHHHHHHHHHCCCEEHHHHEEEHHHHHHEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA