| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is paaF [H]
Identifier: 159897382
GI number: 159897382
Start: 965354
End: 966130
Strand: Reverse
Name: paaF [H]
Synonym: Haur_0853
Alternate gene names: 159897382
Gene position: 966130-965354 (Counterclockwise)
Preceding gene: 159897383
Following gene: 159897381
Centisome position: 15.22
GC content: 53.67
Gene sequence:
>777_bases GTGTCATATCAACTGATCAGCATCAGCCAGCAGGCCGCCGTTACCACGGTTAGTCTTAATCGGCCAGAATTGCACAATGC CTTTAATCCCGAACTGATTGGCGAATTACGCCAAGCGCTGACTGCGATCGCTACCGATAGCTCGACGCGGGTGGTCATTT TAACGGGCAACGGGCCTTCGTTCTCAGCCGGTGGCGATTTAAGCTGGATGCAAGCCAGCGCCAGTTACACGGCAGAGCAA AATATTGCCGATGCTGAAAATCTTGATGCCATGTTCGATTTGCTCAATAGCATGCCGCAACCAGTCATCGGGCGGATCAA TGGTGCAGCCCTCGGCGGTGGCGCTGGCTTGGTGGCTTGTTGCGATTTAGCGGTAGCGGTCGAGCAAGCAAAATTTGGCT TTACCGAAGTCAAATTAGGCTTGATTCCAGCAGTAATTGCCCAATATGTCGTGCCCAAAATTGGAGTCAGCCAGAGCCGC GCCTTGTTCATTTCAGGCGAGCGTTTCAGTGCCGAACGCGCCTTCGAAATTGGCCTGATCCACGCAATTACCAGCGAAGA TGAGCTTGATCAAACGGTTGGCTATTTGGTAGAACGGATGCTCAGCGGCGGCCCGCAAGCCATGGCTCAAGCCAAAAAGT TAGTTCAAGCGATCTGGGAAATGGAGCGCAGCGCCGCCAAACGCTACGCCATTGAGGCGATCGCCCAAGCTCGTACCAGC GCCGAGGGCCAAACTGGCCTAGCTGCATTTTTAAACAAGCGCAAACCGCAATGGTAA
Upstream 100 bases:
>100_bases TGGTGATACCTTAACCGAATTTGATAATTTACGCATGGCTTATCCCTAGGCCAATGTCAATCTGGCCCAACAACGCGGTT GGGCCAGTCGGAGTAGTTTT
Downstream 100 bases:
>100_bases GACCTTCGACGAAAGGATAGCCGCTATGTACGATGGTGATCGCGCGGTGTCAACCATTTGGCATGAGCAACTTGAGTTGT TAACAAAAACCGCTCAAGAA
Product: enoyl-CoA hydratase/isomerase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 258; Mature: 257
Protein sequence:
>258_residues MSYQLISISQQAAVTTVSLNRPELHNAFNPELIGELRQALTAIATDSSTRVVILTGNGPSFSAGGDLSWMQASASYTAEQ NIADAENLDAMFDLLNSMPQPVIGRINGAALGGGAGLVACCDLAVAVEQAKFGFTEVKLGLIPAVIAQYVVPKIGVSQSR ALFISGERFSAERAFEIGLIHAITSEDELDQTVGYLVERMLSGGPQAMAQAKKLVQAIWEMERSAAKRYAIEAIAQARTS AEGQTGLAAFLNKRKPQW
Sequences:
>Translated_258_residues MSYQLISISQQAAVTTVSLNRPELHNAFNPELIGELRQALTAIATDSSTRVVILTGNGPSFSAGGDLSWMQASASYTAEQ NIADAENLDAMFDLLNSMPQPVIGRINGAALGGGAGLVACCDLAVAVEQAKFGFTEVKLGLIPAVIAQYVVPKIGVSQSR ALFISGERFSAERAFEIGLIHAITSEDELDQTVGYLVERMLSGGPQAMAQAKKLVQAIWEMERSAAKRYAIEAIAQARTS AEGQTGLAAFLNKRKPQW >Mature_257_residues SYQLISISQQAAVTTVSLNRPELHNAFNPELIGELRQALTAIATDSSTRVVILTGNGPSFSAGGDLSWMQASASYTAEQN IADAENLDAMFDLLNSMPQPVIGRINGAALGGGAGLVACCDLAVAVEQAKFGFTEVKLGLIPAVIAQYVVPKIGVSQSRA LFISGERFSAERAFEIGLIHAITSEDELDQTVGYLVERMLSGGPQAMAQAKKLVQAIWEMERSAAKRYAIEAIAQARTSA EGQTGLAAFLNKRKPQW
Specific function: Could possibly oxidize fatty acids using specific components [H]
COG id: COG1024
COG function: function code I; Enoyl-CoA hydratase/carnithine racemase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]
Homologues:
Organism=Homo sapiens, GI194097323, Length=246, Percent_Identity=31.3008130081301, Blast_Score=111, Evalue=7e-25, Organism=Homo sapiens, GI31542718, Length=257, Percent_Identity=26.4591439688716, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI221136756, Length=257, Percent_Identity=25.6809338521401, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI221136753, Length=257, Percent_Identity=25.6809338521401, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI221307494, Length=257, Percent_Identity=25.6809338521401, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI25453481, Length=258, Percent_Identity=25.1937984496124, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI51538573, Length=258, Percent_Identity=25.1937984496124, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI4757966, Length=247, Percent_Identity=26.3157894736842, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI51538581, Length=247, Percent_Identity=26.3157894736842, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI260274832, Length=259, Percent_Identity=25.0965250965251, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI45643119, Length=259, Percent_Identity=25.0965250965251, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI260275230, Length=259, Percent_Identity=25.0965250965251, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI70995211, Length=199, Percent_Identity=28.643216080402, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI116235487, Length=232, Percent_Identity=26.7241379310345, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI4757968, Length=259, Percent_Identity=24.7104247104247, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI49355787, Length=259, Percent_Identity=24.7104247104247, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI68989263, Length=236, Percent_Identity=25, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI4502327, Length=257, Percent_Identity=29.9610894941634, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI37594469, Length=185, Percent_Identity=27.027027027027, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI37594471, Length=185, Percent_Identity=27.027027027027, Blast_Score=73, Evalue=2e-13, Organism=Escherichia coli, GI1787659, Length=254, Percent_Identity=31.8897637795276, Blast_Score=119, Evalue=1e-28, Organism=Escherichia coli, GI1788597, Length=248, Percent_Identity=27.8225806451613, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI221142681, Length=259, Percent_Identity=27.7992277992278, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1787660, Length=259, Percent_Identity=31.6602316602317, Blast_Score=94, Evalue=8e-21, Organism=Escherichia coli, GI87082183, Length=263, Percent_Identity=23.574144486692, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1790281, Length=194, Percent_Identity=22.1649484536082, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI1788682, Length=181, Percent_Identity=26.5193370165746, Blast_Score=65, Evalue=4e-12, Organism=Caenorhabditis elegans, GI25145438, Length=261, Percent_Identity=30.6513409961686, Blast_Score=112, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17554946, Length=253, Percent_Identity=29.2490118577075, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17535521, Length=254, Percent_Identity=27.5590551181102, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI17540714, Length=201, Percent_Identity=29.3532338308458, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17549921, Length=218, Percent_Identity=26.1467889908257, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17540306, Length=252, Percent_Identity=26.1904761904762, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17536985, Length=190, Percent_Identity=25.7894736842105, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17534483, Length=184, Percent_Identity=29.3478260869565, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI25144160, Length=192, Percent_Identity=27.6041666666667, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI25144157, Length=192, Percent_Identity=27.6041666666667, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17558304, Length=181, Percent_Identity=25.9668508287293, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI25141363, Length=241, Percent_Identity=25.7261410788382, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI25144276, Length=156, Percent_Identity=28.8461538461538, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17508953, Length=156, Percent_Identity=28.8461538461538, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17508951, Length=156, Percent_Identity=28.8461538461538, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17560910, Length=255, Percent_Identity=23.5294117647059, Blast_Score=68, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6320241, Length=193, Percent_Identity=27.979274611399, Blast_Score=71, Evalue=2e-13, Organism=Drosophila melanogaster, GI24653139, Length=254, Percent_Identity=29.5275590551181, Blast_Score=107, Evalue=7e-24, Organism=Drosophila melanogaster, GI20129971, Length=246, Percent_Identity=28.0487804878049, Blast_Score=93, Evalue=1e-19, Organism=Drosophila melanogaster, GI24653477, Length=246, Percent_Identity=28.0487804878049, Blast_Score=93, Evalue=1e-19, Organism=Drosophila melanogaster, GI19922422, Length=254, Percent_Identity=22.4409448818898, Blast_Score=89, Evalue=4e-18, Organism=Drosophila melanogaster, GI24654903, Length=226, Percent_Identity=26.5486725663717, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI19920382, Length=236, Percent_Identity=26.271186440678, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI21357171, Length=191, Percent_Identity=26.7015706806283, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014748 - InterPro: IPR001753 - InterPro: IPR018376 [H]
Pfam domain/function: PF00378 ECH [H]
EC number: =4.2.1.17 [H]
Molecular weight: Translated: 27475; Mature: 27343
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYQLISISQQAAVTTVSLNRPELHNAFNPELIGELRQALTAIATDSSTRVVILTGNGPS CCEEEEECCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC FSAGGDLSWMQASASYTAEQNIADAENLDAMFDLLNSMPQPVIGRINGAALGGGAGLVAC CCCCCCCHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCEECCCCHHHHH CDLAVAVEQAKFGFTEVKLGLIPAVIAQYVVPKIGVSQSRALFISGERFSAERAFEIGLI HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHEE HAITSEDELDQTVGYLVERMLSGGPQAMAQAKKLVQAIWEMERSAAKRYAIEAIAQARTS EEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC AEGQTGLAAFLNKRKPQW CCCCHHHHHHHHHCCCCC >Mature Secondary Structure SYQLISISQQAAVTTVSLNRPELHNAFNPELIGELRQALTAIATDSSTRVVILTGNGPS CEEEEECCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC FSAGGDLSWMQASASYTAEQNIADAENLDAMFDLLNSMPQPVIGRINGAALGGGAGLVAC CCCCCCCHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCEECCCCHHHHH CDLAVAVEQAKFGFTEVKLGLIPAVIAQYVVPKIGVSQSRALFISGERFSAERAFEIGLI HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHEE HAITSEDELDQTVGYLVERMLSGGPQAMAQAKKLVQAIWEMERSAAKRYAIEAIAQARTS EEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC AEGQTGLAAFLNKRKPQW CCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9748275; 9097039; 9278503; 10766858 [H]