Definition | Dinoroseobacter shibae DFL 12 plasmid pDSHI03, complete sequence. |
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Accession | NC_009957 |
Length | 126,304 |
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The map label for this gene is 159046533
Identifier: 159046533
GI number: 159046533
Start: 57594
End: 58274
Strand: Direct
Name: 159046533
Synonym: Dshi_3995
Alternate gene names: NA
Gene position: 57594-58274 (Clockwise)
Preceding gene: 159046524
Following gene: 159046534
Centisome position: 45.6
GC content: 63.29
Gene sequence:
>681_bases ATGTGCAATCTCTACTCCCAGACCAAAAGCCAGGACGCGATGCGCCACCTGTTTAACGACATGCTCGGGGAGAATGAGGA ACTTGTAGACAGCACCGGGAACCTGCCGCCTCAACCTGGTATCTGGCCCGATTATCCGGCACCGATCATTCGACATGGTG AAAGCGCAGCGTGGCAGCTGGCCATGGCCCGTTGGGGCATGCCGACCCCTGCGAAGTTTCTCGAAGGCAAGCGCACCGAC AAGGGTGTCACCAATATCCGCAATGTCGGCTCTCCCCATTGGCGGCGCTGGCTCGGTGTCGAACATCGTTGCCTCGTGCC CTTCACCAGTTTTTCGGAAATCGACGGGCGCCGGGGTGCGCCGCGCAATTCGCCGGTCTGGTTCGCTTTGGACGAGGATC GGCCGCTCGCCTTCTTCGCCGGGCTGCGGACGGAATGGACCTCGGTGCGCAAGCTGAAGGAAGGCGAGGTGACAGCGGAG ATCTTCGGTTTCCTGACCTGCCCGCCCAATGCCGAAGTTGCGCCGATCCACCCCAAAGCCATGCCCGTCATCCTCACGCA GCCCGAGGAATGGCGGCACTGGCTGACCGCGCCGGCCGAGGAGGCCCTGAAGCTCCAGCGTCCCCTCCCGGACGGGAGGC TGAAGATCGTTGCCGAGGGGGTGCGCGAGGATGCGGTTTGA
Upstream 100 bases:
>100_bases CAAAACTGCATCGTTGAGAAAAAGTCACACTTTTCAGACGATCTGTGTTCTGCCATTGTTCTCGATTAAATCCCCATTTC GATTCCCAAGCGTACGACAG
Downstream 100 bases:
>100_bases TCCGGCTCCGAGCGAACTCTTTGCCCTGGCCCGGCACCGGGTCCATGAGGCCGAAGGTCCAGGCCGGCGCAGCTTCGCAT TGCTGCAGGCCGCCCGACAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 226; Mature: 226
Protein sequence:
>226_residues MCNLYSQTKSQDAMRHLFNDMLGENEELVDSTGNLPPQPGIWPDYPAPIIRHGESAAWQLAMARWGMPTPAKFLEGKRTD KGVTNIRNVGSPHWRRWLGVEHRCLVPFTSFSEIDGRRGAPRNSPVWFALDEDRPLAFFAGLRTEWTSVRKLKEGEVTAE IFGFLTCPPNAEVAPIHPKAMPVILTQPEEWRHWLTAPAEEALKLQRPLPDGRLKIVAEGVREDAV
Sequences:
>Translated_226_residues MCNLYSQTKSQDAMRHLFNDMLGENEELVDSTGNLPPQPGIWPDYPAPIIRHGESAAWQLAMARWGMPTPAKFLEGKRTD KGVTNIRNVGSPHWRRWLGVEHRCLVPFTSFSEIDGRRGAPRNSPVWFALDEDRPLAFFAGLRTEWTSVRKLKEGEVTAE IFGFLTCPPNAEVAPIHPKAMPVILTQPEEWRHWLTAPAEEALKLQRPLPDGRLKIVAEGVREDAV >Mature_226_residues MCNLYSQTKSQDAMRHLFNDMLGENEELVDSTGNLPPQPGIWPDYPAPIIRHGESAAWQLAMARWGMPTPAKFLEGKRTD KGVTNIRNVGSPHWRRWLGVEHRCLVPFTSFSEIDGRRGAPRNSPVWFALDEDRPLAFFAGLRTEWTSVRKLKEGEVTAE IFGFLTCPPNAEVAPIHPKAMPVILTQPEEWRHWLTAPAEEALKLQRPLPDGRLKIVAEGVREDAV
Specific function: Unknown
COG id: COG2135
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25553; Mature: 25553
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCNLYSQTKSQDAMRHLFNDMLGENEELVDSTGNLPPQPGIWPDYPAPIIRHGESAAWQL CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCHHHHCCCHHHHHH AMARWGMPTPAKFLEGKRTDKGVTNIRNVGSPHWRRWLGVEHRCLVPFTSFSEIDGRRGA HHHHCCCCCCHHHHCCCCCCCHHHHHHHCCCHHHHHHHCCCCEEEECCCCHHHCCCCCCC PRNSPVWFALDEDRPLAFFAGLRTEWTSVRKLKEGEVTAEIFGFLTCPPNAEVAPIHPKA CCCCCEEEEECCCCCEEEECCCHHHHHHHHHHHCCCEEEEHEEEEECCCCCCEECCCCCC MPVILTQPEEWRHWLTAPAEEALKLQRPLPDGRLKIVAEGVREDAV EEEEEECCHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEHHHHHCCC >Mature Secondary Structure MCNLYSQTKSQDAMRHLFNDMLGENEELVDSTGNLPPQPGIWPDYPAPIIRHGESAAWQL CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCHHHHCCCHHHHHH AMARWGMPTPAKFLEGKRTDKGVTNIRNVGSPHWRRWLGVEHRCLVPFTSFSEIDGRRGA HHHHCCCCCCHHHHCCCCCCCHHHHHHHCCCHHHHHHHCCCCEEEECCCCHHHCCCCCCC PRNSPVWFALDEDRPLAFFAGLRTEWTSVRKLKEGEVTAEIFGFLTCPPNAEVAPIHPKA CCCCCEEEEECCCCCEEEECCCHHHHHHHHHHHCCCEEEEHEEEEECCCCCCEECCCCCC MPVILTQPEEWRHWLTAPAEEALKLQRPLPDGRLKIVAEGVREDAV EEEEEECCHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA