| Definition | Dinoroseobacter shibae DFL 12 plasmid pDSHI03, complete sequence. |
|---|---|
| Accession | NC_009957 |
| Length | 126,304 |
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The map label for this gene is mco [H]
Identifier: 159046473
GI number: 159046473
Start: 2470
End: 3774
Strand: Direct
Name: mco [H]
Synonym: Dshi_3934
Alternate gene names: 159046473
Gene position: 2470-3774 (Clockwise)
Preceding gene: 159046472
Following gene: 159046474
Centisome position: 1.96
GC content: 59.31
Gene sequence:
>1305_bases GTGACGGAATTGTCTTTGAGCCGGAGGTCTTTCCTTGGCGGGATGACCGTTGCGCTGGCTGGTACCCGCTTGCCAGCAGC GACACACGAGTTGATCCTCGCGCCCCAATCGATCAAGGCGCACCTTGCTGGGTACGACGTGTCGATGTTGGGCTTCAACG GTGGTCTGCCGGGCCCAGAAGTCAGAATGCGACAAGGACAAACCGCCCGCATTACCCTCGATAACCGATTGGAGGAGGGC GCTCTCGTTCACTGGCATGGGTTGCGGGTTCCAAATCGGATGGATGGTGTCAACGTCCTCACTCAGGATGTGGTCATTCC GGGCGACTCGTATCGTTATCAATTCGGCGTCCCGGATGCCGGCACGTATTGGTATCACTCGCATTACCTGTCTTACGATC AGGTCAGCCGCGGTCTTTTCGGCGCCTTCATCGTCGAGGAGCAAAATGCGCCGGCTGTCGACCATGACATCGTTGTTCAG TTCTTCGATGTCTTGCTGGATCAGTCCGGGCAGTACGACGAAGCGTTCAACCCGGCCCACTTCGCAACCGAGGGCCGTAT CGGCAATACGGTCACGGCACTTGTTTTCAATGGAACCGGCAAGACTGTGAAACGAGGCGACCGTCTGCGACTGCGTCTCA TAAATCCCTCTATCGACAGGGTGTACCGTGTCGGCCTGGATGGTTTGATAGGCAAGATCGTTGCACTGGATGGCATGCCT CTGGCGCATCCTCGGACGCTCGAACCGATCCTTCTCGCTCCGGGGCAAAGATGCGATGTGATTGGTGATGCGACCGGGCC TATTAGATTCGACGACAGCTTTGGAGAACAGACGTTGAGCCTTGGCGAAATCGCTGTTTCCGGTTCCCGTGAGCCCGCGA AAGCGCCCATCACCGCATTGCCCGCCAACCGAATGCCCGCCCCGAAAGACCCCGGCCAAACCGCGGAGCTGGTGCTCCAG GGAGGTGCGGGAAGCGCGTCCCACAACGGCACAGGGACATGGGCGCTCAATGACGTATCCGGCCTGCCTCGAAGGCCTTT CCTATCCGCCGCGCAGGGGACGACCGCGCGCATTTCGATCCGCAACGAAACCGGGTTCCCACACGTCATGCATCTGCATG GCCACCATTTCTGGGAACTCGATGCGGCGGGTGAAGCCGGTCCATACCGGGACTCGACCTATCTGGATACCGGCGAGACG CGGGATATTCTCGTCGTCCTGGACAATCCGGGATCGTGGATGCTGCATTGCCACATGTTGAGCCACCAAGCCGACGGTAT GGCAACGTGGATCAGAGTCGGCTGA
Upstream 100 bases:
>100_bases AAGTGACAACGGCGTGAGGAGTGTTCTGTCGCCTTGAAGTTCCTCTTCCGGAAATGGCACAAGTGCGGCAGTTGGCGAAA GCCAGTCTATCATTCATGAG
Downstream 100 bases:
>100_bases GGGTCGAGACGGATACATACCGTTACAAATCTCTGAATGATAACAGGCCTTTCGCCGTCTACGTAACCTGACAAGCGAGA AACAGGTCCATCGACTGCCA
Product: multicopper oxidase type 3
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 434; Mature: 433
Protein sequence:
>434_residues MTELSLSRRSFLGGMTVALAGTRLPAATHELILAPQSIKAHLAGYDVSMLGFNGGLPGPEVRMRQGQTARITLDNRLEEG ALVHWHGLRVPNRMDGVNVLTQDVVIPGDSYRYQFGVPDAGTYWYHSHYLSYDQVSRGLFGAFIVEEQNAPAVDHDIVVQ FFDVLLDQSGQYDEAFNPAHFATEGRIGNTVTALVFNGTGKTVKRGDRLRLRLINPSIDRVYRVGLDGLIGKIVALDGMP LAHPRTLEPILLAPGQRCDVIGDATGPIRFDDSFGEQTLSLGEIAVSGSREPAKAPITALPANRMPAPKDPGQTAELVLQ GGAGSASHNGTGTWALNDVSGLPRRPFLSAAQGTTARISIRNETGFPHVMHLHGHHFWELDAAGEAGPYRDSTYLDTGET RDILVVLDNPGSWMLHCHMLSHQADGMATWIRVG
Sequences:
>Translated_434_residues MTELSLSRRSFLGGMTVALAGTRLPAATHELILAPQSIKAHLAGYDVSMLGFNGGLPGPEVRMRQGQTARITLDNRLEEG ALVHWHGLRVPNRMDGVNVLTQDVVIPGDSYRYQFGVPDAGTYWYHSHYLSYDQVSRGLFGAFIVEEQNAPAVDHDIVVQ FFDVLLDQSGQYDEAFNPAHFATEGRIGNTVTALVFNGTGKTVKRGDRLRLRLINPSIDRVYRVGLDGLIGKIVALDGMP LAHPRTLEPILLAPGQRCDVIGDATGPIRFDDSFGEQTLSLGEIAVSGSREPAKAPITALPANRMPAPKDPGQTAELVLQ GGAGSASHNGTGTWALNDVSGLPRRPFLSAAQGTTARISIRNETGFPHVMHLHGHHFWELDAAGEAGPYRDSTYLDTGET RDILVVLDNPGSWMLHCHMLSHQADGMATWIRVG >Mature_433_residues TELSLSRRSFLGGMTVALAGTRLPAATHELILAPQSIKAHLAGYDVSMLGFNGGLPGPEVRMRQGQTARITLDNRLEEGA LVHWHGLRVPNRMDGVNVLTQDVVIPGDSYRYQFGVPDAGTYWYHSHYLSYDQVSRGLFGAFIVEEQNAPAVDHDIVVQF FDVLLDQSGQYDEAFNPAHFATEGRIGNTVTALVFNGTGKTVKRGDRLRLRLINPSIDRVYRVGLDGLIGKIVALDGMPL AHPRTLEPILLAPGQRCDVIGDATGPIRFDDSFGEQTLSLGEIAVSGSREPAKAPITALPANRMPAPKDPGQTAELVLQG GAGSASHNGTGTWALNDVSGLPRRPFLSAAQGTTARISIRNETGFPHVMHLHGHHFWELDAAGEAGPYRDSTYLDTGETR DILVVLDNPGSWMLHCHMLSHQADGMATWIRVG
Specific function: May be involved in copper homeostasis and oxidative stress response [H]
COG id: COG2132
COG function: function code Q; Putative multicopper oxidases
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the multicopper oxidase family [H]
Homologues:
Organism=Escherichia coli, GI1786314, Length=464, Percent_Identity=24.5689655172414, Blast_Score=85, Evalue=1e-17, Organism=Escherichia coli, GI1789394, Length=489, Percent_Identity=25.3578732106339, Blast_Score=77, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6321067, Length=273, Percent_Identity=27.4725274725275, Blast_Score=86, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6323703, Length=454, Percent_Identity=23.7885462555066, Blast_Score=74, Evalue=3e-14, Organism=Drosophila melanogaster, GI24650186, Length=180, Percent_Identity=30, Blast_Score=68, Evalue=1e-11,
Paralogues:
None
Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001117 - InterPro: IPR011706 - InterPro: IPR011707 - InterPro: IPR002355 - InterPro: IPR008972 [H]
Pfam domain/function: PF00394 Cu-oxidase; PF07731 Cu-oxidase_2; PF07732 Cu-oxidase_3 [H]
EC number: NA
Molecular weight: Translated: 47060; Mature: 46929
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: PS00079 MULTICOPPER_OXIDASE1 ; PS00080 MULTICOPPER_OXIDASE2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTELSLSRRSFLGGMTVALAGTRLPAATHELILAPQSIKAHLAGYDVSMLGFNGGLPGPE CCCCCCCHHHHHCCEEEEEECCCCCCCCCEEEECCHHHHHHHCCCEEEEEEECCCCCCCH VRMRQGQTARITLDNRLEEGALVHWHGLRVPNRMDGVNVLTQDVVIPGDSYRYQFGVPDA HHCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCC GTYWYHSHYLSYDQVSRGLFGAFIVEEQNAPAVDHDIVVQFFDVLLDQSGQYDEAFNPAH CCEEEEEEECCHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC FATEGRIGNTVTALVFNGTGKTVKRGDRLRLRLINPSIDRVYRVGLDGLIGKIVALDGMP EEECCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCHHHHHHHCHHHHHHHHEEECCCC LAHPRTLEPILLAPGQRCDVIGDATGPIRFDDSFGEQTLSLGEIAVSGSREPAKAPITAL CCCCCCCCCEEECCCCCCEEEECCCCCEEECCCCCCHHEEECEEEECCCCCCCCCCEEEC PANRMPAPKDPGQTAELVLQGGAGSASHNGTGTWALNDVSGLPRRPFLSAAQGTTARISI CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEE RNETGFPHVMHLHGHHFWELDAAGEAGPYRDSTYLDTGETRDILVVLDNPGSWMLHCHML ECCCCCCEEEEECCCEEEEEECCCCCCCCCCCCEECCCCCCEEEEEEECCCCEEEEEEEE SHQADGMATWIRVG CCCCCCEEEEEEEC >Mature Secondary Structure TELSLSRRSFLGGMTVALAGTRLPAATHELILAPQSIKAHLAGYDVSMLGFNGGLPGPE CCCCCCHHHHHCCEEEEEECCCCCCCCCEEEECCHHHHHHHCCCEEEEEEECCCCCCCH VRMRQGQTARITLDNRLEEGALVHWHGLRVPNRMDGVNVLTQDVVIPGDSYRYQFGVPDA HHCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCC GTYWYHSHYLSYDQVSRGLFGAFIVEEQNAPAVDHDIVVQFFDVLLDQSGQYDEAFNPAH CCEEEEEEECCHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC FATEGRIGNTVTALVFNGTGKTVKRGDRLRLRLINPSIDRVYRVGLDGLIGKIVALDGMP EEECCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCHHHHHHHCHHHHHHHHEEECCCC LAHPRTLEPILLAPGQRCDVIGDATGPIRFDDSFGEQTLSLGEIAVSGSREPAKAPITAL CCCCCCCCCEEECCCCCCEEEECCCCCEEECCCCCCHHEEECEEEECCCCCCCCCCEEEC PANRMPAPKDPGQTAELVLQGGAGSASHNGTGTWALNDVSGLPRRPFLSAAQGTTARISI CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEE RNETGFPHVMHLHGHHFWELDAAGEAGPYRDSTYLDTGETRDILVVLDNPGSWMLHCHML ECCCCCCEEEEECCCEEEEEECCCCCCCCCCCCEECCCCCCEEEEEEECCCCEEEEEEEE SHQADGMATWIRVG CCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12950922 [H]