Click here to switch to the map view.

The map label for this gene is ynhG [H]

Identifier: 159046472

GI number: 159046472

Start: 1805

End: 2386

Strand: Direct

Name: ynhG [H]

Synonym: Dshi_3933

Alternate gene names: 159046472

Gene position: 1805-2386 (Clockwise)

Preceding gene: NA

Following gene: 159046473

Centisome position: 1.43

GC content: 56.53

Gene sequence:

>582_bases
ATGCAGAATTTCACGAGACGAGAATTGATTTGTGCCGGAGCGATGGGTTGCTTTCTGCCCACAACTGCCTGGGCCCACAA
AGTCAAATTGCCCGAACGGTTCGAACCACAATTGGTAAACACCCGTCGTGGTGACTGGGTTAAAGGCGATGTCCACGTCG
TTCCCGACGATTTTTTCCTTTATTTCATGCTCGAGGACGGGATGGCGATCCGCTACGGGGTCGGGGTAGGGCGCAAAGGT
TTGTACGAACCCGGAGAGTTCACGGTAGCGCGCAAGGCCAAATGGCCATGGTGGCGGCCAACGAACGCCATGATCCGGCG
CGAGCCACGCAAATACGCAAAGTACAAGGATGGACTGAAAGGCGGGCCAAACAACCCGCTCGGGGCCCGCGCGCTCTATC
TCTACGATGCCGAGGGACGCGATACCTATCTTCGCATTCATGGAACGAACGCCCCGGAGACAATTGGGTCTGCCGTGTCG
AATGGATGCGCGCGGTTGACGAATGAACATGTGAAGGATCTGTACGAACGCGTTGAAATCGGCGCCCGCGTCTTCCTGTA
TCCCAAAGTGACAACGGCGTGA

Upstream 100 bases:

>100_bases
GTTTCAAGGCAACAAAGGCGCGTCGTTTGCCCCGGTTCACGGCTTCTTTTCTTTGCCCCTGACGCGCACTGAATTTTCAT
GGGTCCGAGGAGATCGCGCC

Downstream 100 bases:

>100_bases
GGAGTGTTCTGTCGCCTTGAAGTTCCTCTTCCGGAAATGGCACAAGTGCGGCAGTTGGCGAAAGCCAGTCTATCATTCAT
GAGGTGACGGAATTGTCTTT

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MQNFTRRELICAGAMGCFLPTTAWAHKVKLPERFEPQLVNTRRGDWVKGDVHVVPDDFFLYFMLEDGMAIRYGVGVGRKG
LYEPGEFTVARKAKWPWWRPTNAMIRREPRKYAKYKDGLKGGPNNPLGARALYLYDAEGRDTYLRIHGTNAPETIGSAVS
NGCARLTNEHVKDLYERVEIGARVFLYPKVTTA

Sequences:

>Translated_193_residues
MQNFTRRELICAGAMGCFLPTTAWAHKVKLPERFEPQLVNTRRGDWVKGDVHVVPDDFFLYFMLEDGMAIRYGVGVGRKG
LYEPGEFTVARKAKWPWWRPTNAMIRREPRKYAKYKDGLKGGPNNPLGARALYLYDAEGRDTYLRIHGTNAPETIGSAVS
NGCARLTNEHVKDLYERVEIGARVFLYPKVTTA
>Mature_193_residues
MQNFTRRELICAGAMGCFLPTTAWAHKVKLPERFEPQLVNTRRGDWVKGDVHVVPDDFFLYFMLEDGMAIRYGVGVGRKG
LYEPGEFTVARKAKWPWWRPTNAMIRREPRKYAKYKDGLKGGPNNPLGARALYLYDAEGRDTYLRIHGTNAPETIGSAVS
NGCARLTNEHVKDLYERVEIGARVFLYPKVTTA

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787968, Length=125, Percent_Identity=37.6, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1788299, Length=147, Percent_Identity=37.4149659863946, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787040, Length=125, Percent_Identity=39.2, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 21986; Mature: 21986

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNFTRRELICAGAMGCFLPTTAWAHKVKLPERFEPQLVNTRRGDWVKGDVHVVPDDFFL
CCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCEECCCCCCEECCCEEECCCCEEE
YFMLEDGMAIRYGVGVGRKGLYEPGEFTVARKAKWPWWRPTNAMIRREPRKYAKYKDGLK
EEEECCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCHHHHHHHHCCCC
GGPNNPLGARALYLYDAEGRDTYLRIHGTNAPETIGSAVSNGCARLTNEHVKDLYERVEI
CCCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GARVFLYPKVTTA
CCEEEEEEEEECC
>Mature Secondary Structure
MQNFTRRELICAGAMGCFLPTTAWAHKVKLPERFEPQLVNTRRGDWVKGDVHVVPDDFFL
CCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCEECCCCCCEECCCEEECCCCEEE
YFMLEDGMAIRYGVGVGRKGLYEPGEFTVARKAKWPWWRPTNAMIRREPRKYAKYKDGLK
EEEECCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCHHHHHHHHCCCC
GGPNNPLGARALYLYDAEGRDTYLRIHGTNAPETIGSAVSNGCARLTNEHVKDLYERVEI
CCCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GARVFLYPKVTTA
CCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9097039 [H]