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The map label for this gene is rlpA [H]

Identifier: 158423795

GI number: 158423795

Start: 2487490

End: 2488671

Strand: Direct

Name: rlpA [H]

Synonym: AZC_2171

Alternate gene names: 158423795

Gene position: 2487490-2488671 (Clockwise)

Preceding gene: 158423793

Following gene: 158423796

Centisome position: 46.32

GC content: 67.17

Gene sequence:

>1182_bases
GTGGCGGAACATTACAGGGCGTTTACCTTAATCACAGGCGCGCCGCATTTCTGCCTCGATTTCCGCACCTCTTGTGGCAA
ATTCAACGCAGGCATGCACAGTCTGCTTGCTTCGAAAAATCCGCCCATGAGGGCCGGGTGGGTTTCGGCGACAAGGACGC
ACATGACGCGAGAAACTCAGATCGTTTCCTTCGTTCGCGCTTCGCGGGGCACCGTCGGCGTGGCGGTGCTCTGCCTGTCG
CTCGCCGCCTGCAGCTCCGCCGGAAAGCTCGCGAGCCAGATCGATCCGAAATATGGCGTGTCGGCGAGCCCCAAGGTGGT
CGCCGACGGCCAGCCCGTTCCCAAGGGCGGCGGCACCTACCGCGTCGGCAAGCCCTACGTGATCGCGGGCCGCACCTACG
TCCCGCAGGAAAACCCCGACTACAAGGCGGAAGGCGTCGCCTCCTGGTATGGCGATGATTTCCACGGCCGCCTGACGGCC
AATGGCGAGGTGTTCGACCGCACCTCCATCTCCGCCGCCCATCCCACGCTGCCCATGCCGAGCTATGTGCGTGTGACGAA
CATCCAGAACGGCCGCTCGATCATCGTGCGCATCAACGATCGCGGCCCGTATCACCAGAATCGCGTCATCGACGTGTCCC
ATCGCACCGCCGACCTGTTGGGCTTCTCGTCCAAGGGCGTGGCGCGCGTGAAGGTGGAATATGTCGGCCGCGCGCCGCTC
GACGGCTCGGATGACCGCAAGCTCGTCGCCACCCTGCGGGACGACGGCTATCCGGCGCAGGTGCCGGCCAATTCCGCGGT
GCAGGTGGCATCCGCCGCGCCGTTCGTGCCGGAAATCGCTCCGGTGATGCCGCGCACCGCCTCCAGCGAAATCCCCGTGC
CGCTCCAGCGCCCGTTCGATCTCGGCCATGCCGATGCCGGCGATCAGGTCGCCGATGCGCAGCCGGCGGCTCCGACCCGC
CGCACGGCGTCGGTTTCGTCGGATGCCATCAGCGCTCAGCTCGCCAAGGCCGATGTGACGGCGCCTGCCAGGTCCGGCAC
CGTTGCGCCGAAGGTCGCCTCGGCCGCCAATGCGTCGCAGGCCATCCACAGCGCGACGGGCGGCTCTGCCCCGACCGGCT
GGAACGTTGGCCCTGCGCCGGTTTCCGGCCTCAGCTATTCCGGCGTGACGTCGTCGCGCTGA

Upstream 100 bases:

>100_bases
GTCCCTCGATTCGAGCCCGGAACCGGGGCAGGCTTGTGCGAAGCTGAGGTTTGCCGCTCGCGCGGAAGGGAGCACAAAGC
GGCGTGGGTGCTCGCAAAAC

Downstream 100 bases:

>100_bases
TCCGTAACGGGTGCTCCGGGGGGGCGTCCATGACGTTCGAAATGTGTCACGAGCAGCCCCGGTCGGGGCGCTCCGCAGGA
ATGAAGCGCCGCCGGCCTCT

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MAEHYRAFTLITGAPHFCLDFRTSCGKFNAGMHSLLASKNPPMRAGWVSATRTHMTRETQIVSFVRASRGTVGVAVLCLS
LAACSSAGKLASQIDPKYGVSASPKVVADGQPVPKGGGTYRVGKPYVIAGRTYVPQENPDYKAEGVASWYGDDFHGRLTA
NGEVFDRTSISAAHPTLPMPSYVRVTNIQNGRSIIVRINDRGPYHQNRVIDVSHRTADLLGFSSKGVARVKVEYVGRAPL
DGSDDRKLVATLRDDGYPAQVPANSAVQVASAAPFVPEIAPVMPRTASSEIPVPLQRPFDLGHADAGDQVADAQPAAPTR
RTASVSSDAISAQLAKADVTAPARSGTVAPKVASAANASQAIHSATGGSAPTGWNVGPAPVSGLSYSGVTSSR

Sequences:

>Translated_393_residues
MAEHYRAFTLITGAPHFCLDFRTSCGKFNAGMHSLLASKNPPMRAGWVSATRTHMTRETQIVSFVRASRGTVGVAVLCLS
LAACSSAGKLASQIDPKYGVSASPKVVADGQPVPKGGGTYRVGKPYVIAGRTYVPQENPDYKAEGVASWYGDDFHGRLTA
NGEVFDRTSISAAHPTLPMPSYVRVTNIQNGRSIIVRINDRGPYHQNRVIDVSHRTADLLGFSSKGVARVKVEYVGRAPL
DGSDDRKLVATLRDDGYPAQVPANSAVQVASAAPFVPEIAPVMPRTASSEIPVPLQRPFDLGHADAGDQVADAQPAAPTR
RTASVSSDAISAQLAKADVTAPARSGTVAPKVASAANASQAIHSATGGSAPTGWNVGPAPVSGLSYSGVTSSR
>Mature_392_residues
AEHYRAFTLITGAPHFCLDFRTSCGKFNAGMHSLLASKNPPMRAGWVSATRTHMTRETQIVSFVRASRGTVGVAVLCLSL
AACSSAGKLASQIDPKYGVSASPKVVADGQPVPKGGGTYRVGKPYVIAGRTYVPQENPDYKAEGVASWYGDDFHGRLTAN
GEVFDRTSISAAHPTLPMPSYVRVTNIQNGRSIIVRINDRGPYHQNRVIDVSHRTADLLGFSSKGVARVKVEYVGRAPLD
GSDDRKLVATLRDDGYPAQVPANSAVQVASAAPFVPEIAPVMPRTASSEIPVPLQRPFDLGHADAGDQVADAQPAAPTRR
TASVSSDAISAQLAKADVTAPARSGTVAPKVASAANASQAIHSATGGSAPTGWNVGPAPVSGLSYSGVTSSR

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=179, Percent_Identity=37.4301675977654, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR022438
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 41115; Mature: 40983

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEHYRAFTLITGAPHFCLDFRTSCGKFNAGMHSLLASKNPPMRAGWVSATRTHMTRETQ
CCCCEEEEEEEECCCCEEEEHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
IVSFVRASRGTVGVAVLCLSLAACSSAGKLASQIDPKYGVSASPKVVADGQPVPKGGGTY
HHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCEE
RVGKPYVIAGRTYVPQENPDYKAEGVASWYGDDFHGRLTANGEVFDRTSISAAHPTLPMP
ECCCCEEEECCEECCCCCCCCCCCCCHHHCCCCCCCEEEECCCEEECCCCCCCCCCCCCC
SYVRVTNIQNGRSIIVRINDRGPYHQNRVIDVSHRTADLLGFSSKGVARVKVEYVGRAPL
CEEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCHHHHHCCCCCCEEEEEEEEECCCCC
DGSDDRKLVATLRDDGYPAQVPANSAVQVASAAPFVPEIAPVMPRTASSEIPVPLQRPFD
CCCCCCEEEEEECCCCCCCCCCCCCCEEEHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
LGHADAGDQVADAQPAAPTRRTASVSSDAISAQLAKADVTAPARSGTVAPKVASAANASQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCHHH
AIHSATGGSAPTGWNVGPAPVSGLSYSGVTSSR
HHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCC
>Mature Secondary Structure 
AEHYRAFTLITGAPHFCLDFRTSCGKFNAGMHSLLASKNPPMRAGWVSATRTHMTRETQ
CCCEEEEEEEECCCCEEEEHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
IVSFVRASRGTVGVAVLCLSLAACSSAGKLASQIDPKYGVSASPKVVADGQPVPKGGGTY
HHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCEE
RVGKPYVIAGRTYVPQENPDYKAEGVASWYGDDFHGRLTANGEVFDRTSISAAHPTLPMP
ECCCCEEEECCEECCCCCCCCCCCCCHHHCCCCCCCEEEECCCEEECCCCCCCCCCCCCC
SYVRVTNIQNGRSIIVRINDRGPYHQNRVIDVSHRTADLLGFSSKGVARVKVEYVGRAPL
CEEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCHHHHHCCCCCCEEEEEEEEECCCCC
DGSDDRKLVATLRDDGYPAQVPANSAVQVASAAPFVPEIAPVMPRTASSEIPVPLQRPFD
CCCCCCEEEEEECCCCCCCCCCCCCCEEEHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
LGHADAGDQVADAQPAAPTRRTASVSSDAISAQLAKADVTAPARSGTVAPKVASAANASQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCHHH
AIHSATGGSAPTGWNVGPAPVSGLSYSGVTSSR
HHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]