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The map label for this gene is yfdE [H]

Identifier: 158423466

GI number: 158423466

Start: 2107077

End: 2108216

Strand: Direct

Name: yfdE [H]

Synonym: AZC_1842

Alternate gene names: 158423466

Gene position: 2107077-2108216 (Clockwise)

Preceding gene: 158423463

Following gene: 158423467

Centisome position: 39.24

GC content: 69.74

Gene sequence:

>1140_bases
ATGGCGGGCGATCTCGACGGCCTCCTGGTGGTCAGCGTGGAGCAGGCGGTGGCGGCGCCCTATGTCTCCGGGCGGCTGGC
CGAGGCAGGGGCGCGGGTCATCAAGGTGGAGCGGCCCGAGGGCGATTTCGCCCGGGGCTACGACCATCTCGTACAGGGGG
AGAGCGCCTATTTCGTCTGGCTGAACCGGGGCAAGGAATCGGTCTGCCTCGACCTGCGCCTCGAAGCGGACAAGGCCCTG
CTGGCGGATCTCATCGCAAAGGCCGACGTCTTCATCCAGAATCTCGCCCCCGGCGCGGTGGCCCGCCTCGGCTTCGATCC
GGAGGCGTTGCGGGCCGCGCATCCGCGCCTCATCACCTGCTCCATCTCCGGCTATGGGGAGGAGGGGCCGTACCGCGATC
TCAAGGCCTACGACCTGCTCGTGCAGGCGGAGACGGGTCTGTCCTCCATTACCGGCACGGCGGAGGAGATGGCGCGGGTC
GGCGTGTCCGTCTGTGACATTGCCGCCGGCATGACCGCCTTCCAGTCCATCCTTCAGGCCCTCTATGCGCGCGAGCGGAC
GGGGCTGGGGCGGCACATCGCCGTGTCGCTCTTCCATGCGCTCGCCGACTGGATGAACGTGCCTTATCTCCAGTACGCCT
ATGGCGGCCGGACGGCGCCGCGCGCCGGCCTCTCCCATCCCACCATCGCGCCCTATGGCGCCTATGCCTGCGGCGACGGG
CGTTCGGTGCTCTTCTCCATCCAGAACGAGCGGGAATGGGCGGCCTTCTGCGGCGAGGTGCTGCGCGCGCCGCAGCTCGC
GGACGATCCGCGCTTCCGGGACAATTCCGCCCGCGTCGCGGCCCGGCCGGCGCTCGATGCCGTCATCGCCGAGGTGTTCG
GAACCCTTGGCCGGGACGAGGTGGTGGCGCGGCTGGAGGCGGCCCGCATCGCTTATGGCCGGGTTTCCACCCTGGCCGAC
CTCGCGGCGCATCCACAAAACCGATATGTGTCTGTGGAAACGCCGTCCGGCCCGGTGCGCATGCTGGGAGCGGGTGCGCT
TGTGGATGGAATGTTGCCGCAGCCCGGTCCCGTGCCGGCCCTCGGCGCCCAGACGCAGGCCGTCCGCGCGGAGTTCGGCG
GAAGAGGGAGCACAGAATGA

Upstream 100 bases:

>100_bases
CGGGGCAAATAGCAAAATCAAAGCGCCGCCATCGCAAAGTCCTATGGGCGCGCACAGGCACTGGGCCGCTAGCTTTCGCG
GGGGTGTGAGGAGAACGGAC

Downstream 100 bases:

>100_bases
GCCGTCCGGTCCGTACCAGCCTGTCCGTCATCGAAGACGCTCTGGGCCCGCTCGAAGGCAAGCATGTCCTCGACCTTGGC
TGCGGCCACGGCGCGCTTGC

Product: acyl-CoA transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MAGDLDGLLVVSVEQAVAAPYVSGRLAEAGARVIKVERPEGDFARGYDHLVQGESAYFVWLNRGKESVCLDLRLEADKAL
LADLIAKADVFIQNLAPGAVARLGFDPEALRAAHPRLITCSISGYGEEGPYRDLKAYDLLVQAETGLSSITGTAEEMARV
GVSVCDIAAGMTAFQSILQALYARERTGLGRHIAVSLFHALADWMNVPYLQYAYGGRTAPRAGLSHPTIAPYGAYACGDG
RSVLFSIQNEREWAAFCGEVLRAPQLADDPRFRDNSARVAARPALDAVIAEVFGTLGRDEVVARLEAARIAYGRVSTLAD
LAAHPQNRYVSVETPSGPVRMLGAGALVDGMLPQPGPVPALGAQTQAVRAEFGGRGSTE

Sequences:

>Translated_379_residues
MAGDLDGLLVVSVEQAVAAPYVSGRLAEAGARVIKVERPEGDFARGYDHLVQGESAYFVWLNRGKESVCLDLRLEADKAL
LADLIAKADVFIQNLAPGAVARLGFDPEALRAAHPRLITCSISGYGEEGPYRDLKAYDLLVQAETGLSSITGTAEEMARV
GVSVCDIAAGMTAFQSILQALYARERTGLGRHIAVSLFHALADWMNVPYLQYAYGGRTAPRAGLSHPTIAPYGAYACGDG
RSVLFSIQNEREWAAFCGEVLRAPQLADDPRFRDNSARVAARPALDAVIAEVFGTLGRDEVVARLEAARIAYGRVSTLAD
LAAHPQNRYVSVETPSGPVRMLGAGALVDGMLPQPGPVPALGAQTQAVRAEFGGRGSTE
>Mature_378_residues
AGDLDGLLVVSVEQAVAAPYVSGRLAEAGARVIKVERPEGDFARGYDHLVQGESAYFVWLNRGKESVCLDLRLEADKALL
ADLIAKADVFIQNLAPGAVARLGFDPEALRAAHPRLITCSISGYGEEGPYRDLKAYDLLVQAETGLSSITGTAEEMARVG
VSVCDIAAGMTAFQSILQALYARERTGLGRHIAVSLFHALADWMNVPYLQYAYGGRTAPRAGLSHPTIAPYGAYACGDGR
SVLFSIQNEREWAAFCGEVLRAPQLADDPRFRDNSARVAARPALDAVIAEVFGTLGRDEVVARLEAARIAYGRVSTLADL
AAHPQNRYVSVETPSGPVRMLGAGALVDGMLPQPGPVPALGAQTQAVRAEFGGRGSTE

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863124, Length=326, Percent_Identity=30.6748466257669, Blast_Score=176, Evalue=4e-44,
Organism=Homo sapiens, GI300863128, Length=376, Percent_Identity=28.9893617021277, Blast_Score=174, Evalue=1e-43,
Organism=Homo sapiens, GI13376042, Length=326, Percent_Identity=27.9141104294479, Blast_Score=141, Evalue=1e-33,
Organism=Homo sapiens, GI300863126, Length=375, Percent_Identity=26.6666666666667, Blast_Score=137, Evalue=1e-32,
Organism=Homo sapiens, GI42794625, Length=381, Percent_Identity=24.9343832020997, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI266456254, Length=384, Percent_Identity=25.5208333333333, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI266458393, Length=242, Percent_Identity=30.1652892561983, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI266458397, Length=241, Percent_Identity=29.4605809128631, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI266458395, Length=144, Percent_Identity=31.9444444444444, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI42822893, Length=144, Percent_Identity=31.9444444444444, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI87082093, Length=375, Percent_Identity=32, Blast_Score=207, Evalue=8e-55,
Organism=Escherichia coli, GI1788717, Length=409, Percent_Identity=29.3398533007335, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1786222, Length=386, Percent_Identity=25.1295336787565, Blast_Score=83, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI32564160, Length=187, Percent_Identity=29.4117647058824, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24648431, Length=394, Percent_Identity=31.7258883248731, Blast_Score=166, Evalue=3e-41,
Organism=Drosophila melanogaster, GI24585488, Length=151, Percent_Identity=30.4635761589404, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40297; Mature: 40166

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGDLDGLLVVSVEQAVAAPYVSGRLAEAGARVIKVERPEGDFARGYDHLVQGESAYFVW
CCCCCCCEEEEEEHHHHHCCHHCCHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEE
LNRGKESVCLDLRLEADKALLADLIAKADVFIQNLAPGAVARLGFDPEALRAAHPRLITC
EECCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHCCCEEEEE
SISGYGEEGPYRDLKAYDLLVQAETGLSSITGTAEEMARVGVSVCDIAAGMTAFQSILQA
EECCCCCCCCCCCHHHHEEEEEECCCCHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHH
LYARERTGLGRHIAVSLFHALADWMNVPYLQYAYGGRTAPRAGLSHPTIAPYGAYACGDG
HHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCC
RSVLFSIQNEREWAAFCGEVLRAPQLADDPRFRDNSARVAARPALDAVIAEVFGTLGRDE
CEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCHHH
VVARLEAARIAYGRVSTLADLAAHPQNRYVSVETPSGPVRMLGAGALVDGMLPQPGPVPA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCHHHHCCCCCCCCCCC
LGAQTQAVRAEFGGRGSTE
CCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AGDLDGLLVVSVEQAVAAPYVSGRLAEAGARVIKVERPEGDFARGYDHLVQGESAYFVW
CCCCCCEEEEEEHHHHHCCHHCCHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEE
LNRGKESVCLDLRLEADKALLADLIAKADVFIQNLAPGAVARLGFDPEALRAAHPRLITC
EECCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHCCCEEEEE
SISGYGEEGPYRDLKAYDLLVQAETGLSSITGTAEEMARVGVSVCDIAAGMTAFQSILQA
EECCCCCCCCCCCHHHHEEEEEECCCCHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHH
LYARERTGLGRHIAVSLFHALADWMNVPYLQYAYGGRTAPRAGLSHPTIAPYGAYACGDG
HHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCC
RSVLFSIQNEREWAAFCGEVLRAPQLADDPRFRDNSARVAARPALDAVIAEVFGTLGRDE
CEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCHHH
VVARLEAARIAYGRVSTLADLAAHPQNRYVSVETPSGPVRMLGAGALVDGMLPQPGPVPA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCHHHHCCCCCCCCCCC
LGAQTQAVRAEFGGRGSTE
CCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]