Click here to switch to the map view.

The map label for this gene is scpB [H]

Identifier: 158423358

GI number: 158423358

Start: 1985575

End: 1986372

Strand: Direct

Name: scpB [H]

Synonym: AZC_1734

Alternate gene names: 158423358

Gene position: 1985575-1986372 (Clockwise)

Preceding gene: 158423357

Following gene: 158423359

Centisome position: 36.98

GC content: 70.55

Gene sequence:

>798_bases
TTGAACGGGGGACGCCGCTTGGAGGAAGGGGAGGGGCGGGAGCCCGAAGAGGTGGAGGCGGGCGCGCCAGCGTCGCGCCG
TGCCGCTCCGCGCCTCGACCTGTTCGACGTCCGTCCGGACGACGAGCGCGCCGTCGCGCTGGCCCGCGATCTCCGGATCA
TCGAGGCGCTGCTCTTCACCGCTGCCGCCCCGATCGATTCCGCCGCCATTGCCGCGCGCCTGCCCGAGAAGACGGACATC
CGCGCGCTGATGGACATTCTGGCCGCCGATTACGCCCGGCGCGGCGTCAATCTCGTGCGGGTGGCGGGCGGCTGGATGCT
GCGCACCGCGCCGGACCTTGCGGCCGTGGTGAGCCAGGGGGCGGTGGAAACACGCAAGCTATCGCGTGCCGCGGTCGAGG
TGCTCGCCATCATCGCCTATCACCAGCCGGTCACCCGCGCGGAGATCGAGGACATCCGCGGCGTCTCCACCTCCAAGGGC
ACGCTGGATGTGCTGCTTGAGAGCGGCTGGGTGCGCCTGCGCGGCCGCCGCAAGGCGCCGGGGCGTCCTGTCACCTATGG
CACCACGCCGGCCTTCCTCGTGCATTTCGGCCTCGACGCCCTTCAGGATCTGCCCGGCCTCGATGAACTGCGCGGCGCCG
GCCTGCTCGACGGGCGCATTCCGGCCGGCTTCTCCATTCCGTTGCCTTCCGACGATTCGACCCTGCGCGACGATGAGGAG
CCGCTGGAGAAGGAGTCGCTGGATCTCGCGCTGGCGCCGCTGCTCGATTATGCGGAGCGCGACGAGGAAGAGGAATGA

Upstream 100 bases:

>100_bases
CGCCGCTCTGGCTGCGGTCGAGGGCCGGGCAGGGTGCGGACCCGCTTGCGCCTTCGAGTGGCGAGGATACGGCTGAGGAC
GGGACGAAGGACGCGGGCGC

Downstream 100 bases:

>100_bases
ACGCCGAAATGCCCATGCCGCGTGGCCGCTCCCCCGCAACCTTCGCCAAGGGGCTCGGCTTCGAGGCCATCACCCTGTCC
TATGGTTCCGTCCAGGCGGT

Product: chromosome segregation and condensation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MNGGRRLEEGEGREPEEVEAGAPASRRAAPRLDLFDVRPDDERAVALARDLRIIEALLFTAAAPIDSAAIAARLPEKTDI
RALMDILAADYARRGVNLVRVAGGWMLRTAPDLAAVVSQGAVETRKLSRAAVEVLAIIAYHQPVTRAEIEDIRGVSTSKG
TLDVLLESGWVRLRGRRKAPGRPVTYGTTPAFLVHFGLDALQDLPGLDELRGAGLLDGRIPAGFSIPLPSDDSTLRDDEE
PLEKESLDLALAPLLDYAERDEEEE

Sequences:

>Translated_265_residues
MNGGRRLEEGEGREPEEVEAGAPASRRAAPRLDLFDVRPDDERAVALARDLRIIEALLFTAAAPIDSAAIAARLPEKTDI
RALMDILAADYARRGVNLVRVAGGWMLRTAPDLAAVVSQGAVETRKLSRAAVEVLAIIAYHQPVTRAEIEDIRGVSTSKG
TLDVLLESGWVRLRGRRKAPGRPVTYGTTPAFLVHFGLDALQDLPGLDELRGAGLLDGRIPAGFSIPLPSDDSTLRDDEE
PLEKESLDLALAPLLDYAERDEEEE
>Mature_265_residues
MNGGRRLEEGEGREPEEVEAGAPASRRAAPRLDLFDVRPDDERAVALARDLRIIEALLFTAAAPIDSAAIAARLPEKTDI
RALMDILAADYARRGVNLVRVAGGWMLRTAPDLAAVVSQGAVETRKLSRAAVEVLAIIAYHQPVTRAEIEDIRGVSTSKG
TLDVLLESGWVRLRGRRKAPGRPVTYGTTPAFLVHFGLDALQDLPGLDELRGAGLLDGRIPAGFSIPLPSDDSTLRDDEE
PLEKESLDLALAPLLDYAERDEEEE

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 28729; Mature: 28729

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGGRRLEEGEGREPEEVEAGAPASRRAAPRLDLFDVRPDDERAVALARDLRIIEALLFT
CCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHH
AAAPIDSAAIAARLPEKTDIRALMDILAADYARRGVNLVRVAGGWMLRTAPDLAAVVSQG
HCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEEECCHHHHHHHHHC
AVETRKLSRAAVEVLAIIAYHQPVTRAEIEDIRGVSTSKGTLDVLLESGWVRLRGRRKAP
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHCCEEEECCCCCCC
GRPVTYGTTPAFLVHFGLDALQDLPGLDELRGAGLLDGRIPAGFSIPLPSDDSTLRDDEE
CCCEECCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCHH
PLEKESLDLALAPLLDYAERDEEEE
HHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNGGRRLEEGEGREPEEVEAGAPASRRAAPRLDLFDVRPDDERAVALARDLRIIEALLFT
CCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHH
AAAPIDSAAIAARLPEKTDIRALMDILAADYARRGVNLVRVAGGWMLRTAPDLAAVVSQG
HCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEEECCHHHHHHHHHC
AVETRKLSRAAVEVLAIIAYHQPVTRAEIEDIRGVSTSKGTLDVLLESGWVRLRGRRKAP
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHCCEEEECCCCCCC
GRPVTYGTTPAFLVHFGLDALQDLPGLDELRGAGLLDGRIPAGFSIPLPSDDSTLRDDEE
CCCEECCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCHH
PLEKESLDLALAPLLDYAERDEEEE
HHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA