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The map label for this gene is soxB [H]

Identifier: 158423120

GI number: 158423120

Start: 1697776

End: 1699026

Strand: Reverse

Name: soxB [H]

Synonym: AZC_1496

Alternate gene names: 158423120

Gene position: 1699026-1697776 (Counterclockwise)

Preceding gene: 158423123

Following gene: 158423119

Centisome position: 31.64

GC content: 67.15

Gene sequence:

>1251_bases
ATGCGCTATTCCGTCTTCAGCCTCTTGGCCAATGCCCTCACCGGGCAGAAGGGCTGGAAGCCCGCCTGGCGCGATGCCGC
GCCCAAGCCCGCCTATGACGTGATCGTGGTGGGCGGCGGCGGCCACGGCCTCGCCACCGCTTATTACCTTGCGAAAGAGC
ATGGCATCCGCAACGTGGCGGTGATCGAAAAGGGCTGGATCGGTTCCGGCAATGCCGGGCGCAACACCACCATCATCCGC
TCGAACTATCTGCTGCCGGGCAACGAGCCCTTCTACGAATGGTCCATGAAGCTGTGGGAGGGCCTGGAACAGGACCTCAA
CTACAATGCCATGGTCAGCCAGCGCGGCGTGCTGAACCTGTGCCACACGGACGCCCAGCGCGACGCCTATGCGCGGCGCG
GCAACGCCATGCGGCTCAATGGCGCGGATGCCGAACTGCTGGATCAGGATGGCGTGCGCGCCATGTATCCCTTCCTCGAT
TTCGAGAATGCGCGCTTCCCCATCAAGGGCGGCCTGCTCCAGCGGCGCGGCGGCACGGCCCGCCATGACGCGGTGGTGTG
GGGCTATGCCCGCGGGGCGGACCGGCTCGGCGTGGACATCGTGCAGAATTGCGAGGTCACCGGCTTCATCCGCGAGAATG
GCGCGGTGGTGGGGGTGGAGACCACGCGCGGGCCGATCCGGGCGAAGAAGGTGGGCCTTGCGGTCGCCGGCTCCACCTCG
CGGCTCACCTCGAAGCTCGACATGCGCCTGCCCATCGAGAGCCACGTGCTCCAGGCCTTCGTCTCGGAAGGCCTGAAGCC
GCTTATCGACGGCGTGATCACTTTCGGCGCCGGGCATTTCTACGTGAGCCAGTCCGACAAGGGCGGCCTCGTCTTCGGCG
GCGACATCGACGGCTACAATTCCTATGCCCAGCGCGGCAACCTGCCGGTGGTGGAGGATGTGGCGGAGAGCGCCATGGCG
CTCATCCCGCGCCTCGGCCGCGTGCGGATGCTGCGCTCCTGGGGCGGCGTCATGGACATGTCCATGGACGGCACGCCGAT
CATCGATCTGACGCCCATCCCCGGCCTCTATCTCAACACCGGCTGGTGCTACGGCGGCTTCAAGGCAACGCCCGCCTCCG
GCTGGTGCTTCGCCTGGACGCTGGCCAAGGACGCGCCCCACGCGCTCAACGCCGCCATGCGGCTCGACCGCTTCCGCACC
GGACACATCATCGACGAAAAGGGCGTCGGCGCGCAGCCGAACCTGCACTGA

Upstream 100 bases:

>100_bases
TTCGTCAACAAAGCGTCGCTTTTGGGCATGATGCCAGAGGCGGGATGGGCGATCCATAGTCCAGCCGCGCCCCGATGCGG
GGCCCTTCTCAGGAACGACG

Downstream 100 bases:

>100_bases
AGGTCTCCCCGTCATGCGCATTCCCTGCCCTTACTGCGGGCTCCGCGATGCCCACGAGTTCGCCTATCTGGGCGACGCCA
CCGTGAAGCGCCCCGATCCC

Product: sarcosine oxidase subunit beta

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MRYSVFSLLANALTGQKGWKPAWRDAAPKPAYDVIVVGGGGHGLATAYYLAKEHGIRNVAVIEKGWIGSGNAGRNTTIIR
SNYLLPGNEPFYEWSMKLWEGLEQDLNYNAMVSQRGVLNLCHTDAQRDAYARRGNAMRLNGADAELLDQDGVRAMYPFLD
FENARFPIKGGLLQRRGGTARHDAVVWGYARGADRLGVDIVQNCEVTGFIRENGAVVGVETTRGPIRAKKVGLAVAGSTS
RLTSKLDMRLPIESHVLQAFVSEGLKPLIDGVITFGAGHFYVSQSDKGGLVFGGDIDGYNSYAQRGNLPVVEDVAESAMA
LIPRLGRVRMLRSWGGVMDMSMDGTPIIDLTPIPGLYLNTGWCYGGFKATPASGWCFAWTLAKDAPHALNAAMRLDRFRT
GHIIDEKGVGAQPNLH

Sequences:

>Translated_416_residues
MRYSVFSLLANALTGQKGWKPAWRDAAPKPAYDVIVVGGGGHGLATAYYLAKEHGIRNVAVIEKGWIGSGNAGRNTTIIR
SNYLLPGNEPFYEWSMKLWEGLEQDLNYNAMVSQRGVLNLCHTDAQRDAYARRGNAMRLNGADAELLDQDGVRAMYPFLD
FENARFPIKGGLLQRRGGTARHDAVVWGYARGADRLGVDIVQNCEVTGFIRENGAVVGVETTRGPIRAKKVGLAVAGSTS
RLTSKLDMRLPIESHVLQAFVSEGLKPLIDGVITFGAGHFYVSQSDKGGLVFGGDIDGYNSYAQRGNLPVVEDVAESAMA
LIPRLGRVRMLRSWGGVMDMSMDGTPIIDLTPIPGLYLNTGWCYGGFKATPASGWCFAWTLAKDAPHALNAAMRLDRFRT
GHIIDEKGVGAQPNLH
>Mature_416_residues
MRYSVFSLLANALTGQKGWKPAWRDAAPKPAYDVIVVGGGGHGLATAYYLAKEHGIRNVAVIEKGWIGSGNAGRNTTIIR
SNYLLPGNEPFYEWSMKLWEGLEQDLNYNAMVSQRGVLNLCHTDAQRDAYARRGNAMRLNGADAELLDQDGVRAMYPFLD
FENARFPIKGGLLQRRGGTARHDAVVWGYARGADRLGVDIVQNCEVTGFIRENGAVVGVETTRGPIRAKKVGLAVAGSTS
RLTSKLDMRLPIESHVLQAFVSEGLKPLIDGVITFGAGHFYVSQSDKGGLVFGGDIDGYNSYAQRGNLPVVEDVAESAMA
LIPRLGRVRMLRSWGGVMDMSMDGTPIIDLTPIPGLYLNTGWCYGGFKATPASGWCFAWTLAKDAPHALNAAMRLDRFRT
GHIIDEKGVGAQPNLH

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Homo sapiens, GI24797151, Length=409, Percent_Identity=22.9828850855746, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI20130091, Length=356, Percent_Identity=22.4719101123595, Blast_Score=65, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 45229; Mature: 45229

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYSVFSLLANALTGQKGWKPAWRDAAPKPAYDVIVVGGGGHGLATAYYLAKEHGIRNVA
CCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEE
VIEKGWIGSGNAGRNTTIIRSNYLLPGNEPFYEWSMKLWEGLEQDLNYNAMVSQRGVLNL
EEECCCCCCCCCCCCEEEEEECEECCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHH
CHTDAQRDAYARRGNAMRLNGADAELLDQDGVRAMYPFLDFENARFPIKGGLLQRRGGTA
HHCCHHHHHHHHCCCEEEECCCCHHHHCCCCCEEEECEECCCCCCCCCCCCCEECCCCCC
RHDAVVWGYARGADRLGVDIVQNCEVTGFIRENGAVVGVETTRGPIRAKKVGLAVAGSTS
CCCEEEEEECCCCCCCCCHHHCCCCEEEEEECCCEEEEEECCCCCCEEEEEEEEEECCHH
RLTSKLDMRLPIESHVLQAFVSEGLKPLIDGVITFGAGHFYVSQSDKGGLVFGGDIDGYN
HHHHHCEEECCHHHHHHHHHHHHCHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCH
SYAQRGNLPVVEDVAESAMALIPRLGRVRMLRSWGGVMDMSMDGTPIIDLTPIPGLYLNT
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEEECCCCCEEEEC
GWCYGGFKATPASGWCFAWTLAKDAPHALNAAMRLDRFRTGHIIDEKGVGAQPNLH
CEEECCEECCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCC
>Mature Secondary Structure
MRYSVFSLLANALTGQKGWKPAWRDAAPKPAYDVIVVGGGGHGLATAYYLAKEHGIRNVA
CCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEE
VIEKGWIGSGNAGRNTTIIRSNYLLPGNEPFYEWSMKLWEGLEQDLNYNAMVSQRGVLNL
EEECCCCCCCCCCCCEEEEEECEECCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHH
CHTDAQRDAYARRGNAMRLNGADAELLDQDGVRAMYPFLDFENARFPIKGGLLQRRGGTA
HHCCHHHHHHHHCCCEEEECCCCHHHHCCCCCEEEECEECCCCCCCCCCCCCEECCCCCC
RHDAVVWGYARGADRLGVDIVQNCEVTGFIRENGAVVGVETTRGPIRAKKVGLAVAGSTS
CCCEEEEEECCCCCCCCCHHHCCCCEEEEEECCCEEEEEECCCCCCEEEEEEEEEECCHH
RLTSKLDMRLPIESHVLQAFVSEGLKPLIDGVITFGAGHFYVSQSDKGGLVFGGDIDGYN
HHHHHCEEECCHHHHHHHHHHHHCHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCH
SYAQRGNLPVVEDVAESAMALIPRLGRVRMLRSWGGVMDMSMDGTPIIDLTPIPGLYLNT
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEEECCCCCEEEEC
GWCYGGFKATPASGWCFAWTLAKDAPHALNAAMRLDRFRTGHIIDEKGVGAQPNLH
CEEECCEECCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]