| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is inlJ [H]
Identifier: 157963054
GI number: 157963054
Start: 3969372
End: 3971117
Strand: Direct
Name: inlJ [H]
Synonym: Spea_3237
Alternate gene names: 157963054
Gene position: 3969372-3971117 (Clockwise)
Preceding gene: 157963053
Following gene: 157963055
Centisome position: 76.71
GC content: 42.15
Gene sequence:
>1746_bases ATGAAATCATCGAAATTAACCATCGCCTTACTTGGCTCAAGCCTGTTAGCCTTAAGCGGCTGCGCGCTCATTCAAGCCCC TAAGCTTGTGAGTGAGGTTCAATTTAACGACCCGCTATTTGCAAGATGCGTTGAACAAACTGGCATAAAAGAACTGGCAC AAATCTCTGAGCTTAGCTGTAACAGCAAAGCTATAACCAATGTAGACGAAATCCGCTATATGCCTGAACTCACGGCACTA GTGCTGTTAGACAATCAAATAAAGTCTATTGATGTCAGCAGTCTAGAGGGACTTGATCGCCTCATCATAGGTGATAACCA GCTTACTCATATTGATCTATCTAATAACCCACAGCTTATCGCGCTCAATATTTCAGGCAATCAAATGACTGAAGTTGATG TTAGCGCAACCCCCAAGCTTAAGAGCCTTTATGCCTATAAGTTACCTTTGACTCATATCGATGTTTCTCATCAGCCAAAA CTTAGGGATCTTGGCTTAAGCCGCCACCAACTTACCGAAATTGATCTATCAAATAACTCAGAATTACAGACATTGAACCT TTCAGTCGGCACCCTCAAAAAAATTGACCTGTCGCATAACCCTAAGCTGAATCACCTCTACTTACCAAGTAACCAGCTTA CTGAGCTTAACCTCGAGCATCATCCAGATCTAAGGGTGGTTTCGGTTAGAAATAATCAACTCAAACAGCTAGATCTAAGC CACAATCCACTGCTATTCAAAGTTAAAGCCGATTACAACCAGATTGATGAGCTCATGCTTAACCCTAGCGCACCGATGCA AGAGATTGAGCTTAATAGCAATCGTATTACAAGCTTAGATGTATCCTCTTTTAATAAGCTCAAAAAGCTGATTGCCTTTA ATAACCCACTGCAACAGCTAATCGTCGATGAGGAGCACTTGCCGCAATTGATCTCAATTGAAGGCACGCCAGTGGATTTA GCCAACAAGGCTCAACATGAAAAACAAGCACTCTCCAATTTAGTCTCACCGAGAGTCAGCATTATTGAAGCCGGTACTAT TAGCCAAAAAGGCAATCAATATGATGTAACAGCCAGTCAATTAGTCATGCCAACCTTAGGGCAATACCTAGGTTACCGAT ATGCCGTAACCCTACCTAAAAATGCTAAAGGTCAAATTGATCCGATACTTGCTAATCAAAATCAATTCCCAATTACCGTG CGCATGACCCACCCCGAGATCATCGATCCTAAGAGCGGTAAAGGTTTTACCAGCTCTAGTTGGACCGACACCATGTTTAA GCACGATCGAAATCTCGCCATGTGGTATTTCGGTGAGCCCCATGAACTCGTCACTGGACGTTGGACGTTAGAGATCCTTT ATCGCGACTCAGTGGTGGCCAAAAAGTCTTTCATGCTGGTCAATATGGATGAAAAAACTGCGTTAAAAGGGCAGAAGAAT AAGGTCGCAGAGCAAGGGTTGACACTGGAAAAGTTAATCACTCAAGGGGAATATTACCTTTGCGAACAAGATAAATATCA ACAGTGTTTAGGTTTTAATGATGCCAAAAGCTGCGCAATTAACATGCAGCCTTTTAAGTCACAATGCTTAAAAGATGCTC TTGTCATGATTAAACAGCACTCAGCAATACCTATGAATGACCAACTCAAAGAGTTTTTTAGTCACTTCATGGCTTGTATG GGCAGTCACTACATTCAAACCACTGAGCTTAATCCTAAGCAAGTGGGTCAGTGTTTAAGTCAATAA
Upstream 100 bases:
>100_bases TTGATATACCACTAATGGGTTATATAAGGCTTACCCGCAATCATTAGGCCAGCTCTAAAGAAGCGTCAATTTACAGCAAG CGTAAAAGGAAAAGTATTAA
Downstream 100 bases:
>100_bases AGCTTCGCGTTTTCTACGACTCTCACTTTCCAAAGCCCGCCTATTGCGGGCTTTGTATTATGTCTAATTGTTAACCCTAT CACGCACCTTTACACTTCTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 581; Mature: 581
Protein sequence:
>581_residues MKSSKLTIALLGSSLLALSGCALIQAPKLVSEVQFNDPLFARCVEQTGIKELAQISELSCNSKAITNVDEIRYMPELTAL VLLDNQIKSIDVSSLEGLDRLIIGDNQLTHIDLSNNPQLIALNISGNQMTEVDVSATPKLKSLYAYKLPLTHIDVSHQPK LRDLGLSRHQLTEIDLSNNSELQTLNLSVGTLKKIDLSHNPKLNHLYLPSNQLTELNLEHHPDLRVVSVRNNQLKQLDLS HNPLLFKVKADYNQIDELMLNPSAPMQEIELNSNRITSLDVSSFNKLKKLIAFNNPLQQLIVDEEHLPQLISIEGTPVDL ANKAQHEKQALSNLVSPRVSIIEAGTISQKGNQYDVTASQLVMPTLGQYLGYRYAVTLPKNAKGQIDPILANQNQFPITV RMTHPEIIDPKSGKGFTSSSWTDTMFKHDRNLAMWYFGEPHELVTGRWTLEILYRDSVVAKKSFMLVNMDEKTALKGQKN KVAEQGLTLEKLITQGEYYLCEQDKYQQCLGFNDAKSCAINMQPFKSQCLKDALVMIKQHSAIPMNDQLKEFFSHFMACM GSHYIQTTELNPKQVGQCLSQ
Sequences:
>Translated_581_residues MKSSKLTIALLGSSLLALSGCALIQAPKLVSEVQFNDPLFARCVEQTGIKELAQISELSCNSKAITNVDEIRYMPELTAL VLLDNQIKSIDVSSLEGLDRLIIGDNQLTHIDLSNNPQLIALNISGNQMTEVDVSATPKLKSLYAYKLPLTHIDVSHQPK LRDLGLSRHQLTEIDLSNNSELQTLNLSVGTLKKIDLSHNPKLNHLYLPSNQLTELNLEHHPDLRVVSVRNNQLKQLDLS HNPLLFKVKADYNQIDELMLNPSAPMQEIELNSNRITSLDVSSFNKLKKLIAFNNPLQQLIVDEEHLPQLISIEGTPVDL ANKAQHEKQALSNLVSPRVSIIEAGTISQKGNQYDVTASQLVMPTLGQYLGYRYAVTLPKNAKGQIDPILANQNQFPITV RMTHPEIIDPKSGKGFTSSSWTDTMFKHDRNLAMWYFGEPHELVTGRWTLEILYRDSVVAKKSFMLVNMDEKTALKGQKN KVAEQGLTLEKLITQGEYYLCEQDKYQQCLGFNDAKSCAINMQPFKSQCLKDALVMIKQHSAIPMNDQLKEFFSHFMACM GSHYIQTTELNPKQVGQCLSQ >Mature_581_residues MKSSKLTIALLGSSLLALSGCALIQAPKLVSEVQFNDPLFARCVEQTGIKELAQISELSCNSKAITNVDEIRYMPELTAL VLLDNQIKSIDVSSLEGLDRLIIGDNQLTHIDLSNNPQLIALNISGNQMTEVDVSATPKLKSLYAYKLPLTHIDVSHQPK LRDLGLSRHQLTEIDLSNNSELQTLNLSVGTLKKIDLSHNPKLNHLYLPSNQLTELNLEHHPDLRVVSVRNNQLKQLDLS HNPLLFKVKADYNQIDELMLNPSAPMQEIELNSNRITSLDVSSFNKLKKLIAFNNPLQQLIVDEEHLPQLISIEGTPVDL ANKAQHEKQALSNLVSPRVSIIEAGTISQKGNQYDVTASQLVMPTLGQYLGYRYAVTLPKNAKGQIDPILANQNQFPITV RMTHPEIIDPKSGKGFTSSSWTDTMFKHDRNLAMWYFGEPHELVTGRWTLEILYRDSVVAKKSFMLVNMDEKTALKGQKN KVAEQGLTLEKLITQGEYYLCEQDKYQQCLGFNDAKSCAINMQPFKSQCLKDALVMIKQHSAIPMNDQLKEFFSHFMACM GSHYIQTTELNPKQVGQCLSQ
Specific function: Involved in several steps of L.monocytogenes infection [H]
COG id: COG4886
COG function: function code S; Leucine-rich repeat (LRR) protein
Gene ontology:
Cell location: Secreted, cell wall; Peptidoglycan-anchor (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 4 MucBP domains [H]
Homologues:
Organism=Drosophila melanogaster, GI24667524, Length=276, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014755 - InterPro: IPR009459 - InterPro: IPR019931 - InterPro: IPR001899 [H]
Pfam domain/function: PF06458 MucBP [H]
EC number: NA
Molecular weight: Translated: 65168; Mature: 65168
Theoretical pI: Translated: 6.75; Mature: 6.75
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSSKLTIALLGSSLLALSGCALIQAPKLVSEVQFNDPLFARCVEQTGIKELAQISELSC CCCCCEEEEEECCHHHHHCCCHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC NSKAITNVDEIRYMPELTALVLLDNQIKSIDVSSLEGLDRLIIGDNQLTHIDLSNNPQLI CCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCHHHCCCCEEEECCCEEEEEEECCCCEEE ALNISGNQMTEVDVSATPKLKSLYAYKLPLTHIDVSHQPKLRDLGLSRHQLTEIDLSNNS EEEECCCEEEEEECCCCCCHHHEEEEECCEEEECCCCCCCHHHCCCCCHHEEEEECCCCC ELQTLNLSVGTLKKIDLSHNPKLNHLYLPSNQLTELNLEHHPDLRVVSVRNNQLKQLDLS CEEEEEEECCCEEEECCCCCCCCCEEECCCCCCEEECCCCCCCEEEEEECCCCEEEEECC HNPLLFKVKADYNQIDELMLNPSAPMQEIELNSNRITSLDVSSFNKLKKLIAFNNPLQQL CCCEEEEEECCHHHHHHHHCCCCCCHHEEECCCCEEEEEEHHHHHHHHHHHHCCCCHHHH IVDEEHLPQLISIEGTPVDLANKAQHEKQALSNLVSPRVSIIEAGTISQKGNQYDVTASQ HCCHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCHHH LVMPTLGQYLGYRYAVTLPKNAKGQIDPILANQNQFPITVRMTHPEIIDPKSGKGFTSSS HHHHHHHHHCCEEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCCEECCCCCCCCCCCC WTDTMFKHDRNLAMWYFGEPHELVTGRWTLEILYRDSVVAKKSFMLVNMDEKTALKGQKN CHHHHHHCCCCEEEEEECCCCEEEECEEEEEEEECCCEEEECEEEEEECCHHHHCCCCHH KVAEQGLTLEKLITQGEYYLCEQDKYQQCLGFNDAKSCAINMQPFKSQCLKDALVMIKQH HHHHHCCCHHHHHCCCCEEEECCHHHHHHCCCCCHHCEEEECCHHHHHHHHHHHHHHHCC SAIPMNDQLKEFFSHFMACMGSHYIQTTELNPKQVGQCLSQ CCCCCCHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCC >Mature Secondary Structure MKSSKLTIALLGSSLLALSGCALIQAPKLVSEVQFNDPLFARCVEQTGIKELAQISELSC CCCCCEEEEEECCHHHHHCCCHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC NSKAITNVDEIRYMPELTALVLLDNQIKSIDVSSLEGLDRLIIGDNQLTHIDLSNNPQLI CCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCHHHCCCCEEEECCCEEEEEEECCCCEEE ALNISGNQMTEVDVSATPKLKSLYAYKLPLTHIDVSHQPKLRDLGLSRHQLTEIDLSNNS EEEECCCEEEEEECCCCCCHHHEEEEECCEEEECCCCCCCHHHCCCCCHHEEEEECCCCC ELQTLNLSVGTLKKIDLSHNPKLNHLYLPSNQLTELNLEHHPDLRVVSVRNNQLKQLDLS CEEEEEEECCCEEEECCCCCCCCCEEECCCCCCEEECCCCCCCEEEEEECCCCEEEEECC HNPLLFKVKADYNQIDELMLNPSAPMQEIELNSNRITSLDVSSFNKLKKLIAFNNPLQQL CCCEEEEEECCHHHHHHHHCCCCCCHHEEECCCCEEEEEEHHHHHHHHHHHHCCCCHHHH IVDEEHLPQLISIEGTPVDLANKAQHEKQALSNLVSPRVSIIEAGTISQKGNQYDVTASQ HCCHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCHHH LVMPTLGQYLGYRYAVTLPKNAKGQIDPILANQNQFPITVRMTHPEIIDPKSGKGFTSSS HHHHHHHHHCCEEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCCEECCCCCCCCCCCC WTDTMFKHDRNLAMWYFGEPHELVTGRWTLEILYRDSVVAKKSFMLVNMDEKTALKGQKN CHHHHHHCCCCEEEEEECCCCEEEECEEEEEEEECCCEEEECEEEEEECCHHHHCCCCHH KVAEQGLTLEKLITQGEYYLCEQDKYQQCLGFNDAKSCAINMQPFKSQCLKDALVMIKQH HHHHHCCCHHHHHCCCCEEEECCHHHHHHCCCCCHHCEEEECCHHHHHHHHHHHHHHHCC SAIPMNDQLKEFFSHFMACMGSHYIQTTELNPKQVGQCLSQ CCCCCCHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11679669 [H]