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The map label for this gene is rlpA [C]

Identifier: 157962969

GI number: 157962969

Start: 3857653

End: 3858435

Strand: Direct

Name: rlpA [C]

Synonym: Spea_3152

Alternate gene names: 157962969

Gene position: 3857653-3858435 (Clockwise)

Preceding gene: 157962968

Following gene: 157962970

Centisome position: 74.55

GC content: 47.38

Gene sequence:

>783_bases
ATGCCACGCAATAATACTCTCGCCATCTTGCTTTTAACTGCCACCCTAGCCGCATGTTCTAGTGGTGGTCGCTACGAACT
TGATGACGATAAAGCGCCGACTTCAGCCCCTGATGTAACAAAAGTTGAAGATGCTCATCCCAAATATGAGCCCTACAGTC
GTGGCGGCAACAAAAAAAATTACACCGTATTAGGCAAAAGCTATCAAGTTATGGATACAGGTGAAGGTTATGCCGACAAG
GGCATCGCCTCATGGTATGGGGCTAAGTTTCATGGCCACCTGACCTCTAACGGTGAAACCTATGACATGTACTCCATGTC
TGCAGCCCATAAGACACTGCCGCTACCTAGCTATGTAAAGGTGACTAACCTAAAGAACAACAAGACGGTTATCGTTCGCG
TAAATGACAGAGGCCCGTTCCATGCCGATAGAATTATTGACCTCTCTTACGCTGCGGCTCACCGTCTAGACATGCTAAAA
ACGGGTACAGCAAATGTCAGTTTAGAAGTCATCTATATTGCCGATCCTGAGTCTAGCGCGCTTGCCGAATTAAAAGGCAC
AGAGCTGCACTATATTCAGGTGGTTGCCTCATCTAGCAAAGAACGCTTAGACAGCCTAGCGAGTGCTTTAGAGCAAAAAT
ATCAGGTTAAAAGCCGGGTGCAGAGTGCCAATAACCTCTACAGACTTCAGCTCGGTCCAATAGGCCAGCAGCAGCTTGCA
ACTAAGCTAACCGAGAAGCTGAAACAAGAGGGGTACCCGCAAAGTTACCTGCTTACAGAATGA

Upstream 100 bases:

>100_bases
TGGCTAGGCCTTAAAAACTTTTATGTTATCACCCGTTACAACCGCAGCCCTCTGTATGCCATGGCCGTGTACCAGTTTAG
CCAGGAATTAAAGAAAGCCT

Downstream 100 bases:

>100_bases
ACCAAGATTAATGAACCAACGCTGAATTCCCTTGTCGACTAATGTTATACTCGTGGGAATTACACTTTCTTCATACATCA
ACTTATTAAGACGTGCATTA

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MPRNNTLAILLLTATLAACSSGGRYELDDDKAPTSAPDVTKVEDAHPKYEPYSRGGNKKNYTVLGKSYQVMDTGEGYADK
GIASWYGAKFHGHLTSNGETYDMYSMSAAHKTLPLPSYVKVTNLKNNKTVIVRVNDRGPFHADRIIDLSYAAAHRLDMLK
TGTANVSLEVIYIADPESSALAELKGTELHYIQVVASSSKERLDSLASALEQKYQVKSRVQSANNLYRLQLGPIGQQQLA
TKLTEKLKQEGYPQSYLLTE

Sequences:

>Translated_260_residues
MPRNNTLAILLLTATLAACSSGGRYELDDDKAPTSAPDVTKVEDAHPKYEPYSRGGNKKNYTVLGKSYQVMDTGEGYADK
GIASWYGAKFHGHLTSNGETYDMYSMSAAHKTLPLPSYVKVTNLKNNKTVIVRVNDRGPFHADRIIDLSYAAAHRLDMLK
TGTANVSLEVIYIADPESSALAELKGTELHYIQVVASSSKERLDSLASALEQKYQVKSRVQSANNLYRLQLGPIGQQQLA
TKLTEKLKQEGYPQSYLLTE
>Mature_259_residues
PRNNTLAILLLTATLAACSSGGRYELDDDKAPTSAPDVTKVEDAHPKYEPYSRGGNKKNYTVLGKSYQVMDTGEGYADKG
IASWYGAKFHGHLTSNGETYDMYSMSAAHKTLPLPSYVKVTNLKNNKTVIVRVNDRGPFHADRIIDLSYAAAHRLDMLKT
GTANVSLEVIYIADPESSALAELKGTELHYIQVVASSSKERLDSLASALEQKYQVKSRVQSANNLYRLQLGPIGQQQLAT
KLTEKLKQEGYPQSYLLTE

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=174, Percent_Identity=35.0574712643678, Blast_Score=119, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 28653; Mature: 28521

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRNNTLAILLLTATLAACSSGGRYELDDDKAPTSAPDVTKVEDAHPKYEPYSRGGNKKN
CCCCCEEEEEEEHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCC
YTVLGKSYQVMDTGEGYADKGIASWYGAKFHGHLTSNGETYDMYSMSAAHKTLPLPSYVK
EEEECCEEEEEECCCCCCCCCHHHHHCCEEEEEECCCCCEEEEEEHHHHHHCCCCCCEEE
VTNLKNNKTVIVRVNDRGPFHADRIIDLSYAAAHRLDMLKTGTANVSLEVIYIADPESSA
EEECCCCCEEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHH
LAELKGTELHYIQVVASSSKERLDSLASALEQKYQVKSRVQSANNLYRLQLGPIGQQQLA
HHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHH
TKLTEKLKQEGYPQSYLLTE
HHHHHHHHHCCCCCCEECCC
>Mature Secondary Structure 
PRNNTLAILLLTATLAACSSGGRYELDDDKAPTSAPDVTKVEDAHPKYEPYSRGGNKKN
CCCCEEEEEEEHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCC
YTVLGKSYQVMDTGEGYADKGIASWYGAKFHGHLTSNGETYDMYSMSAAHKTLPLPSYVK
EEEECCEEEEEECCCCCCCCCHHHHHCCEEEEEECCCCCEEEEEEHHHHHHCCCCCCEEE
VTNLKNNKTVIVRVNDRGPFHADRIIDLSYAAAHRLDMLKTGTANVSLEVIYIADPESSA
EEECCCCCEEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHH
LAELKGTELHYIQVVASSSKERLDSLASALEQKYQVKSRVQSANNLYRLQLGPIGQQQLA
HHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHH
TKLTEKLKQEGYPQSYLLTE
HHHHHHHHHCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]