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The map label for this gene is ybeY [C]

Identifier: 157962956

GI number: 157962956

Start: 3844090

End: 3844560

Strand: Direct

Name: ybeY [C]

Synonym: Spea_3139

Alternate gene names: 157962956

Gene position: 3844090-3844560 (Clockwise)

Preceding gene: 157962955

Following gene: 157962957

Centisome position: 74.29

GC content: 43.1

Gene sequence:

>471_bases
ATGAGTGATAGTCAGATGGTTATCGATCTTGATGTACAAGTTGCCGTAGAAGGATTTGAGCTGCCGTCACAAGCAGAACT
TGAACTTTGGGTAAAAACCGCACTCAGAGATACTATGAGTGAGGCAGAATTAACGATTCGCATCGTCGACGTTGAAGAAA
GCCAAGAATTAAACATGACTTACCGTGGCAAAGACAAACCTACCAATGTTTTGTCTTTCCCGTTTGAAGCACCACCAGGC
ATTGAGCTACCGCTATTAGGCGATTTAGTGATTTGTGCTGCGGTAGTAGAGCAAGAAGCAATTGATCAAAACAAACCCCT
ACTCGCACATTGGGCACACATGGTTGTACATGGTTGCCTCCATCTGCTAGGGTATGATCATATTGAAGATGTTGAGGCTG
AAGAGATGGAGTCATTAGAGACCCAACTGATTGAAAGCCTTGGTTATATTAATCCTTACAAGGAGCAATAA

Upstream 100 bases:

>100_bases
GTGGCACGCATTGTCGAGGCCTATGAAGCGTTCGAGTTAAAAGCACAATCGAGTAAAGGCAATAAAGATAGCCAATACCA
ATTACAGGAAATAGCCCCCC

Downstream 100 bases:

>100_bases
TTGGCTCAATAGAGCCAGGAAAACACTATGAGTGACGATATCCCACCGAGTACTAACGCCTCTAAGAAGGGCTGGTTAGA
CAAAGTAAGTCAGTTGTTCC

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MSDSQMVIDLDVQVAVEGFELPSQAELELWVKTALRDTMSEAELTIRIVDVEESQELNMTYRGKDKPTNVLSFPFEAPPG
IELPLLGDLVICAAVVEQEAIDQNKPLLAHWAHMVVHGCLHLLGYDHIEDVEAEEMESLETQLIESLGYINPYKEQ

Sequences:

>Translated_156_residues
MSDSQMVIDLDVQVAVEGFELPSQAELELWVKTALRDTMSEAELTIRIVDVEESQELNMTYRGKDKPTNVLSFPFEAPPG
IELPLLGDLVICAAVVEQEAIDQNKPLLAHWAHMVVHGCLHLLGYDHIEDVEAEEMESLETQLIESLGYINPYKEQ
>Mature_155_residues
SDSQMVIDLDVQVAVEGFELPSQAELELWVKTALRDTMSEAELTIRIVDVEESQELNMTYRGKDKPTNVLSFPFEAPPGI
ELPLLGDLVICAAVVEQEAIDQNKPLLAHWAHMVVHGCLHLLGYDHIEDVEAEEMESLETQLIESLGYINPYKEQ

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=151, Percent_Identity=62.2516556291391, Blast_Score=175, Evalue=1e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 17548; Mature: 17417

Theoretical pI: Translated: 3.91; Mature: 3.91

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSQMVIDLDVQVAVEGFELPSQAELELWVKTALRDTMSEAELTIRIVDVEESQELNMT
CCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCEE
YRGKDKPTNVLSFPFEAPPGIELPLLGDLVICAAVVEQEAIDQNKPLLAHWAHMVVHGCL
ECCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
HLLGYDHIEDVEAEEMESLETQLIESLGYINPYKEQ
HHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SDSQMVIDLDVQVAVEGFELPSQAELELWVKTALRDTMSEAELTIRIVDVEESQELNMT
CCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCEE
YRGKDKPTNVLSFPFEAPPGIELPLLGDLVICAAVVEQEAIDQNKPLLAHWAHMVVHGCL
ECCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
HLLGYDHIEDVEAEEMESLETQLIESLGYINPYKEQ
HHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA