| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157962934
Identifier: 157962934
GI number: 157962934
Start: 3818940
End: 3820439
Strand: Direct
Name: 157962934
Synonym: Spea_3117
Alternate gene names: NA
Gene position: 3818940-3820439 (Clockwise)
Preceding gene: 157962933
Following gene: 157962935
Centisome position: 73.8
GC content: 47.33
Gene sequence:
>1500_bases ATGCAAAGAGAGCAATGGAATTCTAGGACAGGCTTTATTCTAGCGGCAGTTGGCTCGGCAATCGGCCTCGGCAATATTTG GCGCTTTCCCTATATGGCATATGAGAATGGAGGTGGTGCGTTTTTCATTCCTTATCTATTTGCCATGCTCACAGCAGGCA TTCCATTTATGATCATGGAATTCAGTCTGGGCCATAAGTACCGCGGCGCAGCGCCAAAGATCTTCGCACAGCTCGGTAAA TCACTTGGTTTTCGGCTGGAGTGGCTAGGCTGGTTTCAAGTGTTTATCGCCGCGGTCATTGCTATCTATTATGTCGCGAT CATCGGCTGGGCCATCTCCTACTTTGTTTTCTCTATATCCCAGAGCTGGGGCACTGATACCAATGCCTTCTTCTTCAATG AATACCTACAACTAGGCGACAACTCGCCCACTAAGCTAGGCTCCATGCAATTCCATATTGCTATCCCCATGGCAATAGCT TGGAGTGTTACAACCCTTGCGGTATACAGTGGCGTAAAAGGCGGTATCGAGCGCGCCGGTAAAATCATGATGCCACTACT TTTCATCATGGTGCTGCTATTTATTGCCAGAATTGTGTTTCTCCCTGGCGCCTTAGAAGGACTCAACTACCTATTCAGGC CAGATTTCAGCATGATTTTAAATGCTAAAGTTTGGTCGGCGGCATACGGCCAGATTTTTTTCACCTTAAGTGTCGGCTTT GCCATCATGCTCGCTTACTCTAGCTACCTACCAGAGAAATCCGATATCAATAACAATGCCATTATGACGGTATTAATTAA CTGTGGCTTCTCTATCTTAGGCGGTATTATGATCTTTTCCGTACTAGGCTACATGGCCCAGGAGCAAGCCAAGCCCATTA CCGACGTGGTCACGTCGGGTGTAGGTCTGGCTTTTGTCACTATACCCGCGGCGATTAATTTGCTGCCAGCCCCCTATATC TTCGGGCCGCTATTCTTCTTGGCTTTAGTGGTTGCCGGGATCAGCTCACATATCTCCATTATTGAAGCAGTGGTCTCAGC GGTAATCGATAAACTGTCAATCTCACGAAAAAAGGCGGCGCTGCTGGTTTGTGGTACGGGCTTTGTTATCTCTATGGCGT TTTCGAGTAACGGCGGGCTATTACTACTCGATCTCGTCGATTACTTTATCAATAACATCGCCCTACTCTCTAGTTGCCTA ATCGAGCTGATTATCCTCGCCTGGTTATTTAAGATTGCCGATATCCGTGACTATGCCAACCGCTGCAGTGAATTTAGTAT CGGCAAGTGGATGGAGATCTGCCTACGCTTTATCGGCCCTATCATGCTCGCGATTATTCTAGTTAAAAATCTCATCAACA CGTTGACCGACGGCTATGGCGACTACCCGATTGCAGATCAGCTATTTCTCGGCTGGGGACTGGTGGCGAGTATGCTGTTT GCCGCCATCTTTATCAGTGTCATCTCAGGTAATAATATTTCGAAGGAACCAAAGCTATGA
Upstream 100 bases:
>100_bases GTAAAGTACAAACTTGAAGCAAGTTCTTTAATTGTGACTAGAATTAGTTCTGTTGGCCCAATTTACAATCTTGTAGTTGG AGAGAGTACAGGCGCGTTCA
Downstream 100 bases:
>100_bases GCACTGGTGCAATTATCATGATGGTATTAGCTTTGCTAATCACTTGGGGAGGGGCAGCCGTTTGCATCTCAATAGCGATG AAGGCTTCAAAAAAAGAGTG
Product: sodium:neurotransmitter symporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 499; Mature: 499
Protein sequence:
>499_residues MQREQWNSRTGFILAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMLTAGIPFMIMEFSLGHKYRGAAPKIFAQLGK SLGFRLEWLGWFQVFIAAVIAIYYVAIIGWAISYFVFSISQSWGTDTNAFFFNEYLQLGDNSPTKLGSMQFHIAIPMAIA WSVTTLAVYSGVKGGIERAGKIMMPLLFIMVLLFIARIVFLPGALEGLNYLFRPDFSMILNAKVWSAAYGQIFFTLSVGF AIMLAYSSYLPEKSDINNNAIMTVLINCGFSILGGIMIFSVLGYMAQEQAKPITDVVTSGVGLAFVTIPAAINLLPAPYI FGPLFFLALVVAGISSHISIIEAVVSAVIDKLSISRKKAALLVCGTGFVISMAFSSNGGLLLLDLVDYFINNIALLSSCL IELIILAWLFKIADIRDYANRCSEFSIGKWMEICLRFIGPIMLAIILVKNLINTLTDGYGDYPIADQLFLGWGLVASMLF AAIFISVISGNNISKEPKL
Sequences:
>Translated_499_residues MQREQWNSRTGFILAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMLTAGIPFMIMEFSLGHKYRGAAPKIFAQLGK SLGFRLEWLGWFQVFIAAVIAIYYVAIIGWAISYFVFSISQSWGTDTNAFFFNEYLQLGDNSPTKLGSMQFHIAIPMAIA WSVTTLAVYSGVKGGIERAGKIMMPLLFIMVLLFIARIVFLPGALEGLNYLFRPDFSMILNAKVWSAAYGQIFFTLSVGF AIMLAYSSYLPEKSDINNNAIMTVLINCGFSILGGIMIFSVLGYMAQEQAKPITDVVTSGVGLAFVTIPAAINLLPAPYI FGPLFFLALVVAGISSHISIIEAVVSAVIDKLSISRKKAALLVCGTGFVISMAFSSNGGLLLLDLVDYFINNIALLSSCL IELIILAWLFKIADIRDYANRCSEFSIGKWMEICLRFIGPIMLAIILVKNLINTLTDGYGDYPIADQLFLGWGLVASMLF AAIFISVISGNNISKEPKL >Mature_499_residues MQREQWNSRTGFILAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMLTAGIPFMIMEFSLGHKYRGAAPKIFAQLGK SLGFRLEWLGWFQVFIAAVIAIYYVAIIGWAISYFVFSISQSWGTDTNAFFFNEYLQLGDNSPTKLGSMQFHIAIPMAIA WSVTTLAVYSGVKGGIERAGKIMMPLLFIMVLLFIARIVFLPGALEGLNYLFRPDFSMILNAKVWSAAYGQIFFTLSVGF AIMLAYSSYLPEKSDINNNAIMTVLINCGFSILGGIMIFSVLGYMAQEQAKPITDVVTSGVGLAFVTIPAAINLLPAPYI FGPLFFLALVVAGISSHISIIEAVVSAVIDKLSISRKKAALLVCGTGFVISMAFSSNGGLLLLDLVDYFINNIALLSSCL IELIILAWLFKIADIRDYANRCSEFSIGKWMEICLRFIGPIMLAIILVKNLINTLTDGYGDYPIADQLFLGWGLVASMLF AAIFISVISGNNISKEPKL
Specific function: Putative sodium-dependent transporter [H]
COG id: COG0733
COG function: function code R; Na+-dependent transporters of the SNF family
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]
Homologues:
Organism=Homo sapiens, GI289191351, Length=529, Percent_Identity=29.3005671077505, Blast_Score=230, Evalue=2e-60, Organism=Homo sapiens, GI4557046, Length=529, Percent_Identity=29.3005671077505, Blast_Score=230, Evalue=2e-60, Organism=Homo sapiens, GI289191377, Length=528, Percent_Identity=29.7348484848485, Blast_Score=230, Evalue=2e-60, Organism=Homo sapiens, GI4507043, Length=495, Percent_Identity=30.3030303030303, Blast_Score=223, Evalue=4e-58, Organism=Homo sapiens, GI4507041, Length=522, Percent_Identity=29.8850574712644, Blast_Score=223, Evalue=4e-58, Organism=Homo sapiens, GI21361581, Length=501, Percent_Identity=29.1417165668663, Blast_Score=221, Evalue=9e-58, Organism=Homo sapiens, GI188528618, Length=521, Percent_Identity=29.1746641074856, Blast_Score=218, Evalue=9e-57, Organism=Homo sapiens, GI7657587, Length=456, Percent_Identity=30.0438596491228, Blast_Score=210, Evalue=2e-54, Organism=Homo sapiens, GI5032097, Length=496, Percent_Identity=30.8467741935484, Blast_Score=209, Evalue=4e-54, Organism=Homo sapiens, GI171184408, Length=465, Percent_Identity=29.8924731182796, Blast_Score=204, Evalue=2e-52, Organism=Homo sapiens, GI171184406, Length=465, Percent_Identity=29.8924731182796, Blast_Score=204, Evalue=2e-52, Organism=Homo sapiens, GI171184404, Length=465, Percent_Identity=29.8924731182796, Blast_Score=204, Evalue=2e-52, Organism=Homo sapiens, GI134304856, Length=530, Percent_Identity=28.6792452830189, Blast_Score=204, Evalue=2e-52, Organism=Homo sapiens, GI218563756, Length=496, Percent_Identity=30.4435483870968, Blast_Score=198, Evalue=9e-51, Organism=Homo sapiens, GI197276623, Length=528, Percent_Identity=25.5681818181818, Blast_Score=196, Evalue=4e-50, Organism=Homo sapiens, GI54607094, Length=528, Percent_Identity=25.5681818181818, Blast_Score=196, Evalue=4e-50, Organism=Homo sapiens, GI92859670, Length=542, Percent_Identity=27.3062730627306, Blast_Score=193, Evalue=4e-49, Organism=Homo sapiens, GI6005715, Length=554, Percent_Identity=28.3393501805054, Blast_Score=192, Evalue=8e-49, Organism=Homo sapiens, GI67782317, Length=537, Percent_Identity=27.7467411545624, Blast_Score=183, Evalue=3e-46, Organism=Homo sapiens, GI33354281, Length=588, Percent_Identity=25.1700680272109, Blast_Score=182, Evalue=5e-46, Organism=Homo sapiens, GI67782313, Length=537, Percent_Identity=27.7467411545624, Blast_Score=182, Evalue=7e-46, Organism=Homo sapiens, GI67782315, Length=537, Percent_Identity=27.7467411545624, Blast_Score=182, Evalue=7e-46, Organism=Homo sapiens, GI194018524, Length=570, Percent_Identity=25.9649122807018, Blast_Score=174, Evalue=2e-43, Organism=Homo sapiens, GI51468073, Length=558, Percent_Identity=25.089605734767, Blast_Score=173, Evalue=3e-43, Organism=Homo sapiens, GI58219014, Length=345, Percent_Identity=31.0144927536232, Blast_Score=166, Evalue=5e-41, Organism=Homo sapiens, GI289191353, Length=335, Percent_Identity=30.7462686567164, Blast_Score=162, Evalue=7e-40, Organism=Homo sapiens, GI11181770, Length=545, Percent_Identity=23.6697247706422, Blast_Score=149, Evalue=5e-36, Organism=Homo sapiens, GI300360519, Length=348, Percent_Identity=28.1609195402299, Blast_Score=143, Evalue=4e-34, Organism=Homo sapiens, GI218563758, Length=408, Percent_Identity=28.6764705882353, Blast_Score=141, Evalue=1e-33, Organism=Homo sapiens, GI12408638, Length=526, Percent_Identity=23.0038022813688, Blast_Score=122, Evalue=6e-28, Organism=Homo sapiens, GI226437581, Length=524, Percent_Identity=22.7099236641221, Blast_Score=119, Evalue=7e-27, Organism=Homo sapiens, GI21361693, Length=226, Percent_Identity=29.2035398230088, Blast_Score=103, Evalue=3e-22, Organism=Homo sapiens, GI55749589, Length=310, Percent_Identity=25.1612903225806, Blast_Score=88, Evalue=2e-17, Organism=Homo sapiens, GI197276625, Length=121, Percent_Identity=34.7107438016529, Blast_Score=87, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17555248, Length=513, Percent_Identity=30.4093567251462, Blast_Score=231, Evalue=8e-61, Organism=Caenorhabditis elegans, GI133952791, Length=587, Percent_Identity=27.93867120954, Blast_Score=208, Evalue=6e-54, Organism=Caenorhabditis elegans, GI71995588, Length=497, Percent_Identity=29.5774647887324, Blast_Score=203, Evalue=1e-52, Organism=Caenorhabditis elegans, GI25146584, Length=491, Percent_Identity=29.5315682281059, Blast_Score=186, Evalue=2e-47, Organism=Caenorhabditis elegans, GI17535731, Length=483, Percent_Identity=27.1221532091097, Blast_Score=186, Evalue=3e-47, Organism=Caenorhabditis elegans, GI17554804, Length=468, Percent_Identity=28.6324786324786, Blast_Score=179, Evalue=3e-45, Organism=Caenorhabditis elegans, GI17569475, Length=559, Percent_Identity=25.4025044722719, Blast_Score=177, Evalue=2e-44, Organism=Caenorhabditis elegans, GI212642127, Length=483, Percent_Identity=27.3291925465839, Blast_Score=160, Evalue=1e-39, Organism=Caenorhabditis elegans, GI71998244, Length=406, Percent_Identity=28.5714285714286, Blast_Score=154, Evalue=1e-37, Organism=Caenorhabditis elegans, GI115534083, Length=516, Percent_Identity=21.7054263565891, Blast_Score=131, Evalue=7e-31, Organism=Caenorhabditis elegans, GI17542050, Length=342, Percent_Identity=25.1461988304094, Blast_Score=106, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17542048, Length=457, Percent_Identity=22.7571115973742, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24639514, Length=511, Percent_Identity=29.7455968688845, Blast_Score=226, Evalue=2e-59, Organism=Drosophila melanogaster, GI221329674, Length=510, Percent_Identity=29.8039215686275, Blast_Score=226, Evalue=2e-59, Organism=Drosophila melanogaster, GI45550877, Length=545, Percent_Identity=28.0733944954128, Blast_Score=223, Evalue=3e-58, Organism=Drosophila melanogaster, GI24639516, Length=531, Percent_Identity=28.6252354048964, Blast_Score=219, Evalue=4e-57, Organism=Drosophila melanogaster, GI24582567, Length=452, Percent_Identity=31.6371681415929, Blast_Score=218, Evalue=6e-57, Organism=Drosophila melanogaster, GI24762620, Length=478, Percent_Identity=30.3347280334728, Blast_Score=213, Evalue=2e-55, Organism=Drosophila melanogaster, GI281363702, Length=497, Percent_Identity=29.5774647887324, Blast_Score=211, Evalue=1e-54, Organism=Drosophila melanogaster, GI19921936, Length=527, Percent_Identity=28.6527514231499, Blast_Score=208, Evalue=6e-54, Organism=Drosophila melanogaster, GI17136952, Length=514, Percent_Identity=28.7937743190661, Blast_Score=207, Evalue=1e-53, Organism=Drosophila melanogaster, GI281364394, Length=514, Percent_Identity=28.7937743190661, Blast_Score=204, Evalue=1e-52, Organism=Drosophila melanogaster, GI28574704, Length=514, Percent_Identity=28.7937743190661, Blast_Score=204, Evalue=1e-52, Organism=Drosophila melanogaster, GI17136950, Length=514, Percent_Identity=28.7937743190661, Blast_Score=204, Evalue=1e-52, Organism=Drosophila melanogaster, GI28574702, Length=514, Percent_Identity=28.7937743190661, Blast_Score=204, Evalue=1e-52, Organism=Drosophila melanogaster, GI45551183, Length=426, Percent_Identity=30.7511737089202, Blast_Score=204, Evalue=1e-52, Organism=Drosophila melanogaster, GI281365034, Length=493, Percent_Identity=28.6004056795132, Blast_Score=200, Evalue=2e-51, Organism=Drosophila melanogaster, GI281364136, Length=531, Percent_Identity=28.6252354048964, Blast_Score=198, Evalue=8e-51, Organism=Drosophila melanogaster, GI24661428, Length=508, Percent_Identity=27.1653543307087, Blast_Score=197, Evalue=2e-50, Organism=Drosophila melanogaster, GI19921352, Length=499, Percent_Identity=28.0561122244489, Blast_Score=195, Evalue=7e-50, Organism=Drosophila melanogaster, GI24584353, Length=499, Percent_Identity=28.0561122244489, Blast_Score=195, Evalue=7e-50, Organism=Drosophila melanogaster, GI24652942, Length=492, Percent_Identity=28.4552845528455, Blast_Score=195, Evalue=8e-50, Organism=Drosophila melanogaster, GI45551088, Length=487, Percent_Identity=28.5420944558522, Blast_Score=194, Evalue=8e-50, Organism=Drosophila melanogaster, GI24639853, Length=530, Percent_Identity=26.0377358490566, Blast_Score=181, Evalue=8e-46, Organism=Drosophila melanogaster, GI24654186, Length=356, Percent_Identity=32.5842696629214, Blast_Score=174, Evalue=1e-43, Organism=Drosophila melanogaster, GI24655079, Length=526, Percent_Identity=24.5247148288973, Blast_Score=170, Evalue=2e-42, Organism=Drosophila melanogaster, GI24582569, Length=479, Percent_Identity=28.39248434238, Blast_Score=167, Evalue=2e-41, Organism=Drosophila melanogaster, GI281363700, Length=334, Percent_Identity=32.0359281437126, Blast_Score=164, Evalue=1e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000175 [H]
Pfam domain/function: PF00209 SNF [H]
EC number: NA
Molecular weight: Translated: 54687; Mature: 54687
Theoretical pI: Translated: 8.15; Mature: 8.15
Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQREQWNSRTGFILAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMLTAGIPFMIME CCCCCCCCCCCCHHHHHHHHHCCCCHHHCCEEEEECCCCEEHHHHHHHHHHCCCCCEEHH FSLGHKYRGAAPKIFAQLGKSLGFRLEWLGWFQVFIAAVIAIYYVAIIGWAISYFVFSIS HHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QSWGTDTNAFFFNEYLQLGDNSPTKLGSMQFHIAIPMAIAWSVTTLAVYSGVKGGIERAG HHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCHHHHHHH KIMMPLLFIMVLLFIARIVFLPGALEGLNYLFRPDFSMILNAKVWSAAYGQIFFTLSVGF HHHHHHHHHHHHHHHHHHHHCCCHHHHCHHHHCCCHHHHHCHHHHHHHHHHHHHHHHHHH AIMLAYSSYLPEKSDINNNAIMTVLINCGFSILGGIMIFSVLGYMAQEQAKPITDVVTSG HHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCC VGLAFVTIPAAINLLPAPYIFGPLFFLALVVAGISSHISIIEAVVSAVIDKLSISRKKAA CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE LLVCGTGFVISMAFSSNGGLLLLDLVDYFINNIALLSSCLIELIILAWLFKIADIRDYAN EEEECCCEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RCSEFSIGKWMEICLRFIGPIMLAIILVKNLINTLTDGYGDYPIADQLFLGWGLVASMLF HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH AAIFISVISGNNISKEPKL HHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MQREQWNSRTGFILAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMLTAGIPFMIME CCCCCCCCCCCCHHHHHHHHHCCCCHHHCCEEEEECCCCEEHHHHHHHHHHCCCCCEEHH FSLGHKYRGAAPKIFAQLGKSLGFRLEWLGWFQVFIAAVIAIYYVAIIGWAISYFVFSIS HHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QSWGTDTNAFFFNEYLQLGDNSPTKLGSMQFHIAIPMAIAWSVTTLAVYSGVKGGIERAG HHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCHHHHHHH KIMMPLLFIMVLLFIARIVFLPGALEGLNYLFRPDFSMILNAKVWSAAYGQIFFTLSVGF HHHHHHHHHHHHHHHHHHHHCCCHHHHCHHHHCCCHHHHHCHHHHHHHHHHHHHHHHHHH AIMLAYSSYLPEKSDINNNAIMTVLINCGFSILGGIMIFSVLGYMAQEQAKPITDVVTSG HHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCC VGLAFVTIPAAINLLPAPYIFGPLFFLALVVAGISSHISIIEAVVSAVIDKLSISRKKAA CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE LLVCGTGFVISMAFSSNGGLLLLDLVDYFINNIALLSSCLIELIILAWLFKIADIRDYAN EEEECCCEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RCSEFSIGKWMEICLRFIGPIMLAIILVKNLINTLTDGYGDYPIADQLFLGWGLVASMLF HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH AAIFISVISGNNISKEPKL HHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]