| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
Click here to switch to the map view.
The map label for this gene is irgA [H]
Identifier: 157962747
GI number: 157962747
Start: 3584266
End: 3586533
Strand: Direct
Name: irgA [H]
Synonym: Spea_2929
Alternate gene names: 157962747
Gene position: 3584266-3586533 (Clockwise)
Preceding gene: 157962745
Following gene: 157962751
Centisome position: 69.27
GC content: 46.56
Gene sequence:
>2268_bases ATGAACAAGCTTAAAGTTAGTGTGCTCGCTATCGCGGTAAGCACAGTGCTCCATGCCCAGGCTCAAGAGGCCTCTATCGA TTCTCAATCTCCGCAAGCACCCAATGCTAAAATGCACGAAGTGATTGTTATTTCTGGTTCGCGTATGGAACAGGAAATTG AACAGGTTGCTGGCTCGATTATGGTCATCGATGAAGAAGCCATTGAAAAAAGCATGAGTAATGACTTTGGTAGCTTGTTC AGAAATGAGTCCGCTATTGCCGTTAAAGGCGGGGCTGGTAAACCAACCTCTGTGACCATTCGTGGTATCGGTGGTAACCG TGTAATGATGGTTAAAGACGGTGTACGCGTTAACAACCAATATGCTTCACCGCTAGGTCCTGGCGCTGAAGGCACAGGCC GTGGTCTTACCGAAGTGCAAAGCCTAAAGCAAGTAGAAGTCGTTAAAGCCGCCGCATCGACCATGTATGGCTCTGATGCA TTGGGTGGCGTGGTCGTGATGCGTACCAAAGACGCCAGCGACTACCTAATGGGTGACGACTATTATGTGTCGGTAAATGC TGGCTATGCAGGCGTCAACGACGAATATGCAGCGGGCTTTACCAGTGCGGCAGCCTATGGCGGATTTGAAAACCTGTTGA CCTACCAGCACCGTACAGGTGAAGAACAGCCTAATTACTATGACACTCAGCCAGACAGTGATCTTGTGCAAGACAGTGTA CTGTTCAAGAGTAAATACCATTTCAATGACTACACCTCGGTGCAGCTGACCCTAGATTATCTAGAACAGACCCTAAAGCG CTGGCAATACGAATTCGATAAGGTCGGTGAACTGGACGAAAATATCGATACCGACCGTGACACTCAAGTCAATAACGGCG CGCTACAGCTAGTATCAAGCAAGCCAACTCAAATGCACGACACCCTAACGGTGACTGCTTACTTTGGCCAAACCGAACAG TTAGAGCATAGAGACTATTTCGAATGGAATAAGGCGAACACTGTTTACGGTTTAAGCGAAGTCCGAGATTACAGCTTCGA AGACCAACGTATCGGGCTTAATAGTACTTTTAGCAAATATGTTGGTGGCGACAACTATGGTCATCAGATCACCTATGGTC TGGACTATGAGTTTTCCACCATGTCACGTCACCGTACGGTAAATAACTCTCTTACAGGCGAAACGACGACACCGTTTACC TTTGCCACGACCGACAGCCAACGCCTAGGTGTGTTTGTGCAGGACGATGTCACTCTACTTGATGGTGATTTAAATCTAAT CGCGGGTCTACGTTACGACTATTTCGATAACACGCCAGATCAACAACAAGCTATAGATGCAGGTAAAGATCCGGCAGATT TTCAGAGCATGAGTGATAACTTCTGGTCACCTAAGCTGGGCCTTGTTTATCAGTTATCAGACTCTGTAAGTGTCTATGGT CAGTACGCTTATGGCTACAAGATGCCAACCCCGGATCAGAAATGGGGTGAACTTGAAGTCGATGCAGGTTCGATGACAGA TGTGCTTATTCAGGCTAACTATGATCTAGAGTCTGAGCAATCTCATACCTGGGAAATCGGCGTTCGTGGCAATCATAGCG ACACAAATTATGAACTAACTGCCTTTTATACTCAGGCCAAAGACTTTATTGACTGGCAGTATGTGAGCTATAAGCCTCCT GTATTTTTCCCAGTGATGAAGCCTATGGAGTTTAAGTACCAGTACTACAACCGCGATGAAGTGATCTTGTACGGCGCTGA AGCTCAGGTTAACCATTGGCTAACCGATAGCATTGAGTTATGGGGTAACATCTCTTACACCTATGGTGAAGATGAAAATG GCGATTACCTTAACAGTGTCAGCCCACTCAAGGGTAACGCGGGTATTAACTGGTATACCGACATCGCCGATATGGAAGCA GACTTTGCCGCAGTAGTGCGCTGGGCGGATGATATGAGCCGGACTAATGACATTGAATTAGCCGAGGATGATATTTGTGC CATGGGGATCTGTATTCCTAAAGAGCAGTTTAATGAGGTATACGGAACAGCGGGTTATGCGGTTATGGATCTGACCTTTG GCTTACGTATTGATGATAACTGGAAACTACGCGCGGGTGTTTATAACCTGTTCGATAAAGAGTATATCGATTATGCCGAT GTGGCTGGCCAATCAGTATTCTTACTAGGTGCGAGTATGGACTTAGAAAAAGAAGACTTTACCCAGCCGGGTCGCTACTT CAACGTGAGCGTGAACTATCAGTTCTAG
Upstream 100 bases:
>100_bases TTAGCCCTATCTAAACGAGACCCTACCTCAATTAGGGTATAAGATATCGCGCGTCAAAAAAGAGAATAATTCTCATTTGG TTAATCAGTTAAGGTGCGTA
Downstream 100 bases:
>100_bases CACTTAGCTTGATGATATAGCACGAATAAAAAATGCAGCCTAGGCTGCATTTTTTATTCGGCTAAAATCACGCTTAATCT GGATCTATAAACGATAGGTC
Product: TonB-dependent heme/hemoglobin receptor family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 755; Mature: 755
Protein sequence:
>755_residues MNKLKVSVLAIAVSTVLHAQAQEASIDSQSPQAPNAKMHEVIVISGSRMEQEIEQVAGSIMVIDEEAIEKSMSNDFGSLF RNESAIAVKGGAGKPTSVTIRGIGGNRVMMVKDGVRVNNQYASPLGPGAEGTGRGLTEVQSLKQVEVVKAAASTMYGSDA LGGVVVMRTKDASDYLMGDDYYVSVNAGYAGVNDEYAAGFTSAAAYGGFENLLTYQHRTGEEQPNYYDTQPDSDLVQDSV LFKSKYHFNDYTSVQLTLDYLEQTLKRWQYEFDKVGELDENIDTDRDTQVNNGALQLVSSKPTQMHDTLTVTAYFGQTEQ LEHRDYFEWNKANTVYGLSEVRDYSFEDQRIGLNSTFSKYVGGDNYGHQITYGLDYEFSTMSRHRTVNNSLTGETTTPFT FATTDSQRLGVFVQDDVTLLDGDLNLIAGLRYDYFDNTPDQQQAIDAGKDPADFQSMSDNFWSPKLGLVYQLSDSVSVYG QYAYGYKMPTPDQKWGELEVDAGSMTDVLIQANYDLESEQSHTWEIGVRGNHSDTNYELTAFYTQAKDFIDWQYVSYKPP VFFPVMKPMEFKYQYYNRDEVILYGAEAQVNHWLTDSIELWGNISYTYGEDENGDYLNSVSPLKGNAGINWYTDIADMEA DFAAVVRWADDMSRTNDIELAEDDICAMGICIPKEQFNEVYGTAGYAVMDLTFGLRIDDNWKLRAGVYNLFDKEYIDYAD VAGQSVFLLGASMDLEKEDFTQPGRYFNVSVNYQF
Sequences:
>Translated_755_residues MNKLKVSVLAIAVSTVLHAQAQEASIDSQSPQAPNAKMHEVIVISGSRMEQEIEQVAGSIMVIDEEAIEKSMSNDFGSLF RNESAIAVKGGAGKPTSVTIRGIGGNRVMMVKDGVRVNNQYASPLGPGAEGTGRGLTEVQSLKQVEVVKAAASTMYGSDA LGGVVVMRTKDASDYLMGDDYYVSVNAGYAGVNDEYAAGFTSAAAYGGFENLLTYQHRTGEEQPNYYDTQPDSDLVQDSV LFKSKYHFNDYTSVQLTLDYLEQTLKRWQYEFDKVGELDENIDTDRDTQVNNGALQLVSSKPTQMHDTLTVTAYFGQTEQ LEHRDYFEWNKANTVYGLSEVRDYSFEDQRIGLNSTFSKYVGGDNYGHQITYGLDYEFSTMSRHRTVNNSLTGETTTPFT FATTDSQRLGVFVQDDVTLLDGDLNLIAGLRYDYFDNTPDQQQAIDAGKDPADFQSMSDNFWSPKLGLVYQLSDSVSVYG QYAYGYKMPTPDQKWGELEVDAGSMTDVLIQANYDLESEQSHTWEIGVRGNHSDTNYELTAFYTQAKDFIDWQYVSYKPP VFFPVMKPMEFKYQYYNRDEVILYGAEAQVNHWLTDSIELWGNISYTYGEDENGDYLNSVSPLKGNAGINWYTDIADMEA DFAAVVRWADDMSRTNDIELAEDDICAMGICIPKEQFNEVYGTAGYAVMDLTFGLRIDDNWKLRAGVYNLFDKEYIDYAD VAGQSVFLLGASMDLEKEDFTQPGRYFNVSVNYQF >Mature_755_residues MNKLKVSVLAIAVSTVLHAQAQEASIDSQSPQAPNAKMHEVIVISGSRMEQEIEQVAGSIMVIDEEAIEKSMSNDFGSLF RNESAIAVKGGAGKPTSVTIRGIGGNRVMMVKDGVRVNNQYASPLGPGAEGTGRGLTEVQSLKQVEVVKAAASTMYGSDA LGGVVVMRTKDASDYLMGDDYYVSVNAGYAGVNDEYAAGFTSAAAYGGFENLLTYQHRTGEEQPNYYDTQPDSDLVQDSV LFKSKYHFNDYTSVQLTLDYLEQTLKRWQYEFDKVGELDENIDTDRDTQVNNGALQLVSSKPTQMHDTLTVTAYFGQTEQ LEHRDYFEWNKANTVYGLSEVRDYSFEDQRIGLNSTFSKYVGGDNYGHQITYGLDYEFSTMSRHRTVNNSLTGETTTPFT FATTDSQRLGVFVQDDVTLLDGDLNLIAGLRYDYFDNTPDQQQAIDAGKDPADFQSMSDNFWSPKLGLVYQLSDSVSVYG QYAYGYKMPTPDQKWGELEVDAGSMTDVLIQANYDLESEQSHTWEIGVRGNHSDTNYELTAFYTQAKDFIDWQYVSYKPP VFFPVMKPMEFKYQYYNRDEVILYGAEAQVNHWLTDSIELWGNISYTYGEDENGDYLNSVSPLKGNAGINWYTDIADMEA DFAAVVRWADDMSRTNDIELAEDDICAMGICIPKEQFNEVYGTAGYAVMDLTFGLRIDDNWKLRAGVYNLFDKEYIDYAD VAGQSVFLLGASMDLEKEDFTQPGRYFNVSVNYQF
Specific function: Involved in the initial step of iron uptake by binding ferric vibriobactin, an iron chelatin siderophore that allows V.cholerae to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=172, Percent_Identity=27.906976744186, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1788478, Length=131, Percent_Identity=29.0076335877863, Blast_Score=65, Evalue=2e-11,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 84676; Mature: 84676
Theoretical pI: Translated: 4.11; Mature: 4.11
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKLKVSVLAIAVSTVLHAQAQEASIDSQSPQAPNAKMHEVIVISGSRMEQEIEQVAGSI CCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHCCEE MVIDEEAIEKSMSNDFGSLFRNESAIAVKGGAGKPTSVTIRGIGGNRVMMVKDGVRVNNQ EEEEHHHHHHHHCCHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCEEEEEECCEEECCC YASPLGPGAEGTGRGLTEVQSLKQVEVVKAAASTMYGSDALGGVVVMRTKDASDYLMGDD CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEECCC YYVSVNAGYAGVNDEYAAGFTSAAAYGGFENLLTYQHRTGEEQPNYYDTQPDSDLVQDSV EEEEEECCCCCCCCCHHCCCHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH LFKSKYHFNDYTSVQLTLDYLEQTLKRWQYEFDKVGELDENIDTDRDTQVNNGALQLVSS HHEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEC KPTQMHDTLTVTAYFGQTEQLEHRDYFEWNKANTVYGLSEVRDYSFEDQRIGLNSTFSKY CCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEHHHHHCCCCCCCCCCCCCHHHHH VGGDNYGHQITYGLDYEFSTMSRHRTVNNSLTGETTTPFTFATTDSQRLGVFVQDDVTLL CCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEEEECCEEEE DGDLNLIAGLRYDYFDNTPDQQQAIDAGKDPADFQSMSDNFWSPKLGLVYQLSDSVSVYG ECCEEEEEEEEECCCCCCCCHHHHHHCCCCCHHHHHHCCCCCCCCCCEEEEECCCEEEEE QYAYGYKMPTPDQKWGELEVDAGSMTDVLIQANYDLESEQSHTWEIGVRGNHSDTNYELT EEEECCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCEEEE AFYTQAKDFIDWQYVSYKPPVFFPVMKPMEFKYQYYNRDEVILYGAEAQVNHWLTDSIEL EEEECCCCCCCEEEEEECCCEEEECCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCEEE WGNISYTYGEDENGDYLNSVSPLKGNAGINWYTDIADMEADFAAVVRWADDMSRTNDIEL EEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEE AEDDICAMGICIPKEQFNEVYGTAGYAVMDLTFGLRIDDNWKLRAGVYNLFDKEYIDYAD CCCCEEEEEEECCHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEHHHHHHHHHHHCCHHH VAGQSVFLLGASMDLEKEDFTQPGRYFNVSVNYQF HCCCEEEEEECCCCCCHHHCCCCCCEEEEEEEEEC >Mature Secondary Structure MNKLKVSVLAIAVSTVLHAQAQEASIDSQSPQAPNAKMHEVIVISGSRMEQEIEQVAGSI CCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHCCEE MVIDEEAIEKSMSNDFGSLFRNESAIAVKGGAGKPTSVTIRGIGGNRVMMVKDGVRVNNQ EEEEHHHHHHHHCCHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCEEEEEECCEEECCC YASPLGPGAEGTGRGLTEVQSLKQVEVVKAAASTMYGSDALGGVVVMRTKDASDYLMGDD CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEECCC YYVSVNAGYAGVNDEYAAGFTSAAAYGGFENLLTYQHRTGEEQPNYYDTQPDSDLVQDSV EEEEEECCCCCCCCCHHCCCHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH LFKSKYHFNDYTSVQLTLDYLEQTLKRWQYEFDKVGELDENIDTDRDTQVNNGALQLVSS HHEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEC KPTQMHDTLTVTAYFGQTEQLEHRDYFEWNKANTVYGLSEVRDYSFEDQRIGLNSTFSKY CCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEHHHHHCCCCCCCCCCCCCHHHHH VGGDNYGHQITYGLDYEFSTMSRHRTVNNSLTGETTTPFTFATTDSQRLGVFVQDDVTLL CCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEEEECCEEEE DGDLNLIAGLRYDYFDNTPDQQQAIDAGKDPADFQSMSDNFWSPKLGLVYQLSDSVSVYG ECCEEEEEEEEECCCCCCCCHHHHHHCCCCCHHHHHHCCCCCCCCCCEEEEECCCEEEEE QYAYGYKMPTPDQKWGELEVDAGSMTDVLIQANYDLESEQSHTWEIGVRGNHSDTNYELT EEEECCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCEEEE AFYTQAKDFIDWQYVSYKPPVFFPVMKPMEFKYQYYNRDEVILYGAEAQVNHWLTDSIEL EEEECCCCCCCEEEEEECCCEEEECCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCEEE WGNISYTYGEDENGDYLNSVSPLKGNAGINWYTDIADMEADFAAVVRWADDMSRTNDIEL EEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEE AEDDICAMGICIPKEQFNEVYGTAGYAVMDLTFGLRIDDNWKLRAGVYNLFDKEYIDYAD CCCCEEEEEEECCHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEHHHHHHHHHHHCCHHH VAGQSVFLLGASMDLEKEDFTQPGRYFNVSVNYQF HCCCEEEEEECCCCCCHHHCCCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1406279; 2174861 [H]