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The map label for this gene is sdsB [H]

Identifier: 157962663

GI number: 157962663

Start: 3470230

End: 3471213

Strand: Direct

Name: sdsB [H]

Synonym: Spea_2844

Alternate gene names: 157962663

Gene position: 3470230-3471213 (Clockwise)

Preceding gene: 157962657

Following gene: 157962666

Centisome position: 67.06

GC content: 38.62

Gene sequence:

>984_bases
ATGAGTTATATTGAGCTACCCATGCAAAACATGAATAGATATGTTAATTCTATGCTAACAGTAAAACAGCTCCAACATGT
TGTAGCGATCAAAAAAGCCGGATCAATTCAAGCTGCCACTGAGTTAGCATGTATTAGTCAATCAGCGTTAACTCGAAGCC
TTATGAGTTTGGAAGAGAACTTAGGGGTGGTGTTATTTGAGCGGCACAAAACAGGGGTAATACCAACACCGTTTTGCAAA
AAAATCATTGAACAATGCCAGCAAGTTCTGTACGGATTAGATGACATTAAGCATAATGCAGATATATACAGGAAGTTAGA
AGAAGGCGAATTAAAGATTGGAATAGGTAGAGCGGTCAGTGGTCTAGTTTGTCAGAATATTCTACCAATATTTGTTGCTG
CATATCCAAAGGTAAAGCTTTCAATTATCGAAGGAACCCCAGAAGAGCTTACCCTGCGACTACAACAACGTGAATTCGAT
TTTATCATTGCGGGTTTTGGTAGTTACGCTAATATTGAACAAATAAAAGTATCCCGACTAAAATCAATCCCTCTGTCTAT
CATTGTCAATAATAACCATCCTGTGAATAAGCTTGCAACCGTCACTTGGCAAGATTTACTGCCCTACTCACTCATCGGTG
CCACTAAGCTTTCTCTCTCAAATCCCTTGTATCAGCTATTTGAAAAGTTCACTAAAACCTCCCCTTCCCTGCCATCGGTT
ATGTGCTCCGACTATCAAGCATTGAAAAATATAGTGTTAAGTTCGAACGCTTGGCTTATCGCGCCAGCACCAATCTTTGA
GCGTGAAGTAGTAGATAAAGAATTAACTGAAATTAATTTATCAGTCAAAGAAATGGCAATCGATTTATCCGTAATTGAGC
TGAGTAAGCGACAACGCTCGCCGATGGCGGAGAAATTTATCAGCTTATGTGAAGAATATTTTTTCAACGAAAGTCAAAAT
AAAATAAGCAAATGTACAATGTGA

Upstream 100 bases:

>100_bases
TAGCCGTAACAATTGGTTTGATTTTATACATTATTATTAACCCCAATTTGAATAATTTTCGTTCTGTTTTGAACCTACCC
TCTTTCACTCATGATTAATA

Downstream 100 bases:

>100_bases
ATGCCATCGTTCAAATTAAATTAATAACCACCCATATTAAATCAGTCATGGCCGCATTTACACTTAGTTAGAAAAGCGCA
ACCTTTGCGTTAAGAGCTGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MSYIELPMQNMNRYVNSMLTVKQLQHVVAIKKAGSIQAATELACISQSALTRSLMSLEENLGVVLFERHKTGVIPTPFCK
KIIEQCQQVLYGLDDIKHNADIYRKLEEGELKIGIGRAVSGLVCQNILPIFVAAYPKVKLSIIEGTPEELTLRLQQREFD
FIIAGFGSYANIEQIKVSRLKSIPLSIIVNNNHPVNKLATVTWQDLLPYSLIGATKLSLSNPLYQLFEKFTKTSPSLPSV
MCSDYQALKNIVLSSNAWLIAPAPIFEREVVDKELTEINLSVKEMAIDLSVIELSKRQRSPMAEKFISLCEEYFFNESQN
KISKCTM

Sequences:

>Translated_327_residues
MSYIELPMQNMNRYVNSMLTVKQLQHVVAIKKAGSIQAATELACISQSALTRSLMSLEENLGVVLFERHKTGVIPTPFCK
KIIEQCQQVLYGLDDIKHNADIYRKLEEGELKIGIGRAVSGLVCQNILPIFVAAYPKVKLSIIEGTPEELTLRLQQREFD
FIIAGFGSYANIEQIKVSRLKSIPLSIIVNNNHPVNKLATVTWQDLLPYSLIGATKLSLSNPLYQLFEKFTKTSPSLPSV
MCSDYQALKNIVLSSNAWLIAPAPIFEREVVDKELTEINLSVKEMAIDLSVIELSKRQRSPMAEKFISLCEEYFFNESQN
KISKCTM
>Mature_326_residues
SYIELPMQNMNRYVNSMLTVKQLQHVVAIKKAGSIQAATELACISQSALTRSLMSLEENLGVVLFERHKTGVIPTPFCKK
IIEQCQQVLYGLDDIKHNADIYRKLEEGELKIGIGRAVSGLVCQNILPIFVAAYPKVKLSIIEGTPEELTLRLQQREFDF
IIAGFGSYANIEQIKVSRLKSIPLSIIVNNNHPVNKLATVTWQDLLPYSLIGATKLSLSNPLYQLFEKFTKTSPSLPSVM
CSDYQALKNIVLSSNAWLIAPAPIFEREVVDKELTEINLSVKEMAIDLSVIELSKRQRSPMAEKFISLCEEYFFNESQNK
ISKCTM

Specific function: Activates the transcription of the sdsA gene for sodium dodecyl sulfate (SDS) degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=237, Percent_Identity=25.3164556962025, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1789204, Length=121, Percent_Identity=34.7107438016529, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787530, Length=203, Percent_Identity=24.6305418719212, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36794; Mature: 36662

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYIELPMQNMNRYVNSMLTVKQLQHVVAIKKAGSIQAATELACISQSALTRSLMSLEEN
CCCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
LGVVLFERHKTGVIPTPFCKKIIEQCQQVLYGLDDIKHNADIYRKLEEGELKIGIGRAVS
CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEHHHHHH
GLVCQNILPIFVAAYPKVKLSIIEGTPEELTLRLQQREFDFIIAGFGSYANIEQIKVSRL
HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH
KSIPLSIIVNNNHPVNKLATVTWQDLLPYSLIGATKLSLSNPLYQLFEKFTKTSPSLPSV
HCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHH
MCSDYQALKNIVLSSNAWLIAPAPIFEREVVDKELTEINLSVKEMAIDLSVIELSKRQRS
HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
PMAEKFISLCEEYFFNESQNKISKCTM
HHHHHHHHHHHHHHCCCCCHHHHHCCC
>Mature Secondary Structure 
SYIELPMQNMNRYVNSMLTVKQLQHVVAIKKAGSIQAATELACISQSALTRSLMSLEEN
CCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
LGVVLFERHKTGVIPTPFCKKIIEQCQQVLYGLDDIKHNADIYRKLEEGELKIGIGRAVS
CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEHHHHHH
GLVCQNILPIFVAAYPKVKLSIIEGTPEELTLRLQQREFDFIIAGFGSYANIEQIKVSRL
HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH
KSIPLSIIVNNNHPVNKLATVTWQDLLPYSLIGATKLSLSNPLYQLFEKFTKTSPSLPSV
HCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHH
MCSDYQALKNIVLSSNAWLIAPAPIFEREVVDKELTEINLSVKEMAIDLSVIELSKRQRS
HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
PMAEKFISLCEEYFFNESQNKISKCTM
HHHHHHHHHHHHHHCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1587481 [H]