| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157962648
Identifier: 157962648
GI number: 157962648
Start: 3452857
End: 3455424
Strand: Direct
Name: 157962648
Synonym: Spea_2828
Alternate gene names: NA
Gene position: 3452857-3455424 (Clockwise)
Preceding gene: 157962647
Following gene: 157962649
Centisome position: 66.73
GC content: 46.38
Gene sequence:
>2568_bases ATGCCTTGCCTGACTGTGAAATCCTTGAAGACCTTTAATAGCGATAGCGCAGCAATAGAATTTGAATATAAGAGCAATAA CATGAACAAGCAAAAAACGTTTCGCTTAGAAGATAAACACCTGCCACTGGATAATAGCGTTCATGCTGAAGTGACCGATC TTTTTTATGATTTAAATTACAGCCATCCGGATTGGGCGGAATTAGCGCACAAATTCCCGAATTTAACGAGGCTCGACCTC AATTATTATGGCCGTAAAGAACCCAATCGTATTCCTGATGCGCAGCTATTTATCAACTTCCCAAAATTAAAATGCTTAGA CGCTGTAGCGCAGCCGCTGGTGTTAACGCCAGAGCAAGCGCCTTTTCTGCAACATTTAGAAGAGGTGAATAATGTATTGA TCACCGATGCCATCAGCTTTGCAGTGTTAACTGGTTTGCCTGCCATCAAATCTTTAGACGTGCGCTTGGGTGGCAGCGCC GTAGATCTGACAGCTGCGGGAAAGTCCTTACAAAAAATAAGAATGGTTCTGATGGTGGCTGACTGTGTACAGCTGGATAT GAGCCAAAGCGATAAGCTAACGCACTTTAGCCTTATAATGTCTGACTGCTGCGCTGCTACCCGATTATCACTACCTGCTT CCGTCATTGTGTTGGATATAGTAGAAACCGCTGAGCTAAGCCTAGCGTCTGAGCTGCCAAATCTCGTCCATGCCAAGTTG AGCCCTTGCCTGCCTGAAGTGCTAAAGCATAGTAAGCAGCTTGAGTACCTTGAAGTGTGCCACTTTAGCGCAAGCTCACT ACCTCAGTGGCTACAAGAGCTGCCCAAGCTGAGTCATCTGTCGCTGTTAAATCCAGAACTCACTGAACTGGGTGATATGG GCGGACTGAGCGCGTTAACAGAACTCAGTTTAAAACTACATCACTACTACTTCGATCAAGCGTACACATTTAACGCGCCT AAGCTAACCGGACTGCTAAACGCACCAGCGCTAAATAAATTAAATGTGACCCTAAGTAAGCAAACGAAAGAGATCAGTAG CCTAAAAGCGCTTATTAGCTTACCTAAACGTATCGAGCTAAAACTTGATGTTTATAATCATATCGCTCGCAGTGATGAAC TGAACAAGCTACAGGGAATTTTGCAAAATGCAGAGCTGACTGCTGAGCAAAGAGGGCACTACTGGCTCCTGCTGCTTGGC ATAGATAAACCTAAAAAACTCCCAGCTGAAAAACTTGATGCCCGCTTCCATCTGACCTTTATGGAGGCTAAATACAGTCC GCTAAAATCCTTGGCGCAAGCTTGGCTGCGCAGCCGTGCTCAAGTGGATGCCGAGCGCAGCCCATTGGGTACTGATAGTG TGTTGTTCATCTGCGGAAAAAGCGGTTTTAAGGCGGCAGAACTCAAAGAAAAAGCGGCCGAGCTTGGCTTTAGCCTCAGT AAGAAGCTCGATAGCAAGGTGACCCATATTCTACTAGGCAGTAATCCAAAGCAGACCGCCGCCATCGATGTTGACCAGCA CTTGATTATTGACGATACGGTGCTCAGCCAATGGTTCAGCGCCGATGCTCCTAAGTTTTTGCAACAGACAAGCGCCGTGC CGATGCTGGACAATGTGCTGGATATGCTGCGCTCACCGGATGAAACTAGTCATCTAGTCGCGGTCACTATGCTTGAGCAA GGCGGCATTACATCCGAGATGCAGTTGCCGCTATTTTTAATTCTTAAAACCACCGATAACAAGGCACTGCGTAAGCAAAT TCAGACGTTACTTGCAGGTCTCGGCGACAATCTGTTCCAACTGGCGGTGCAAGATAGGGTGACATTTGATGGCAAGATGC GCGGATTGAATAAGCATGGTGACCCAATCGGTGAAGGCGCTGTCTACAAAAAACTCAAAGGCCTGAACAAGCGCTGGGGC AAAGCCCTATGTGACGAATTTTCATTACTGTATTTCAACCACTTCGGCGAGGGTTTATTGTGGCTGTTGAGTCAAAAAGA AGAGCTAGCTCTCCGACAACAAGCCATTGGTGCGCTAGTTGAAGGCGAACGCCTTAACTGGCACAAAGGCTGCGGCTTTG AGCGCATGTTGACACTAGGCGATGATGATCGTCGAGTTAAATGTCATCTATATCCAAACATCTATCTACGTAGTGATGTG CTGCACAATATCAAAGCGCCATTGCCAATAAAACTACCCAGTAAAACACGCATTACAGAGCTGGATTTGCATAACTGCTT ACTCGGTGAGTTACCCACGAGTTTTGTGCATTATGTCGATGTCACTAAGCTCAACTTACACTTCAATCATTTAAGTTCGC TGCCAGCAACATTAGCCACTCTGAGTAAAATAGAAGACTTAGATCTCTCCTATAACCATTTCGATGAATTTCCGGCCGTG CTGTTCAAGCTAACGAATCTGAAACGGCTCGATCTGCGCCGCGCTCGCCAACCCGCTAGAGGTGTATTTAACTGCCACTA TGATGAAAACGAAGATTACCTGCCCATTCGCGCACCACAAGCATTTCGCGATGCCTTTCCAGAGTGCGAGATTTTAGAAG ATGAATAA
Upstream 100 bases:
>100_bases GATCTGCGCCGCGCTCGCCAACCCACTGGGCGTATATTTAACCACCACTATGACACAAGCCAAGGTTATCAGCCCATTAG TGCACCAAAAGCTTTTCGCG
Downstream 100 bases:
>100_bases ACGCAACGAATAGCAACTTAGGTTACAACAATAAACCGATATGGTGGTTCTTCAATGAGATCACCATACTGGAATTTTTT AATTCAAGAATAATGAAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 855; Mature: 854
Protein sequence:
>855_residues MPCLTVKSLKTFNSDSAAIEFEYKSNNMNKQKTFRLEDKHLPLDNSVHAEVTDLFYDLNYSHPDWAELAHKFPNLTRLDL NYYGRKEPNRIPDAQLFINFPKLKCLDAVAQPLVLTPEQAPFLQHLEEVNNVLITDAISFAVLTGLPAIKSLDVRLGGSA VDLTAAGKSLQKIRMVLMVADCVQLDMSQSDKLTHFSLIMSDCCAATRLSLPASVIVLDIVETAELSLASELPNLVHAKL SPCLPEVLKHSKQLEYLEVCHFSASSLPQWLQELPKLSHLSLLNPELTELGDMGGLSALTELSLKLHHYYFDQAYTFNAP KLTGLLNAPALNKLNVTLSKQTKEISSLKALISLPKRIELKLDVYNHIARSDELNKLQGILQNAELTAEQRGHYWLLLLG IDKPKKLPAEKLDARFHLTFMEAKYSPLKSLAQAWLRSRAQVDAERSPLGTDSVLFICGKSGFKAAELKEKAAELGFSLS KKLDSKVTHILLGSNPKQTAAIDVDQHLIIDDTVLSQWFSADAPKFLQQTSAVPMLDNVLDMLRSPDETSHLVAVTMLEQ GGITSEMQLPLFLILKTTDNKALRKQIQTLLAGLGDNLFQLAVQDRVTFDGKMRGLNKHGDPIGEGAVYKKLKGLNKRWG KALCDEFSLLYFNHFGEGLLWLLSQKEELALRQQAIGALVEGERLNWHKGCGFERMLTLGDDDRRVKCHLYPNIYLRSDV LHNIKAPLPIKLPSKTRITELDLHNCLLGELPTSFVHYVDVTKLNLHFNHLSSLPATLATLSKIEDLDLSYNHFDEFPAV LFKLTNLKRLDLRRARQPARGVFNCHYDENEDYLPIRAPQAFRDAFPECEILEDE
Sequences:
>Translated_855_residues MPCLTVKSLKTFNSDSAAIEFEYKSNNMNKQKTFRLEDKHLPLDNSVHAEVTDLFYDLNYSHPDWAELAHKFPNLTRLDL NYYGRKEPNRIPDAQLFINFPKLKCLDAVAQPLVLTPEQAPFLQHLEEVNNVLITDAISFAVLTGLPAIKSLDVRLGGSA VDLTAAGKSLQKIRMVLMVADCVQLDMSQSDKLTHFSLIMSDCCAATRLSLPASVIVLDIVETAELSLASELPNLVHAKL SPCLPEVLKHSKQLEYLEVCHFSASSLPQWLQELPKLSHLSLLNPELTELGDMGGLSALTELSLKLHHYYFDQAYTFNAP KLTGLLNAPALNKLNVTLSKQTKEISSLKALISLPKRIELKLDVYNHIARSDELNKLQGILQNAELTAEQRGHYWLLLLG IDKPKKLPAEKLDARFHLTFMEAKYSPLKSLAQAWLRSRAQVDAERSPLGTDSVLFICGKSGFKAAELKEKAAELGFSLS KKLDSKVTHILLGSNPKQTAAIDVDQHLIIDDTVLSQWFSADAPKFLQQTSAVPMLDNVLDMLRSPDETSHLVAVTMLEQ GGITSEMQLPLFLILKTTDNKALRKQIQTLLAGLGDNLFQLAVQDRVTFDGKMRGLNKHGDPIGEGAVYKKLKGLNKRWG KALCDEFSLLYFNHFGEGLLWLLSQKEELALRQQAIGALVEGERLNWHKGCGFERMLTLGDDDRRVKCHLYPNIYLRSDV LHNIKAPLPIKLPSKTRITELDLHNCLLGELPTSFVHYVDVTKLNLHFNHLSSLPATLATLSKIEDLDLSYNHFDEFPAV LFKLTNLKRLDLRRARQPARGVFNCHYDENEDYLPIRAPQAFRDAFPECEILEDE >Mature_854_residues PCLTVKSLKTFNSDSAAIEFEYKSNNMNKQKTFRLEDKHLPLDNSVHAEVTDLFYDLNYSHPDWAELAHKFPNLTRLDLN YYGRKEPNRIPDAQLFINFPKLKCLDAVAQPLVLTPEQAPFLQHLEEVNNVLITDAISFAVLTGLPAIKSLDVRLGGSAV DLTAAGKSLQKIRMVLMVADCVQLDMSQSDKLTHFSLIMSDCCAATRLSLPASVIVLDIVETAELSLASELPNLVHAKLS PCLPEVLKHSKQLEYLEVCHFSASSLPQWLQELPKLSHLSLLNPELTELGDMGGLSALTELSLKLHHYYFDQAYTFNAPK LTGLLNAPALNKLNVTLSKQTKEISSLKALISLPKRIELKLDVYNHIARSDELNKLQGILQNAELTAEQRGHYWLLLLGI DKPKKLPAEKLDARFHLTFMEAKYSPLKSLAQAWLRSRAQVDAERSPLGTDSVLFICGKSGFKAAELKEKAAELGFSLSK KLDSKVTHILLGSNPKQTAAIDVDQHLIIDDTVLSQWFSADAPKFLQQTSAVPMLDNVLDMLRSPDETSHLVAVTMLEQG GITSEMQLPLFLILKTTDNKALRKQIQTLLAGLGDNLFQLAVQDRVTFDGKMRGLNKHGDPIGEGAVYKKLKGLNKRWGK ALCDEFSLLYFNHFGEGLLWLLSQKEELALRQQAIGALVEGERLNWHKGCGFERMLTLGDDDRRVKCHLYPNIYLRSDVL HNIKAPLPIKLPSKTRITELDLHNCLLGELPTSFVHYVDVTKLNLHFNHLSSLPATLATLSKIEDLDLSYNHFDEFPAVL FKLTNLKRLDLRRARQPARGVFNCHYDENEDYLPIRAPQAFRDAFPECEILEDE
Specific function: Unknown
COG id: COG4886
COG function: function code S; Leucine-rich repeat (LRR) protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 96096; Mature: 95965
Theoretical pI: Translated: 6.77; Mature: 6.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPCLTVKSLKTFNSDSAAIEFEYKSNNMNKQKTFRLEDKHLPLDNSVHAEVTDLFYDLNY CCCCCHHHHHHCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHEECCC SHPDWAELAHKFPNLTRLDLNYYGRKEPNRIPDAQLFINFPKLKCLDAVAQPLVLTPEQA CCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCEEECCCCC PFLQHLEEVNNVLITDAISFAVLTGLPAIKSLDVRLGGSAVDLTAAGKSLQKIRMVLMVA HHHHHHHHHCCEEHHHHHHHHHHHCCCCHHEEEEEECCCEEEEHHHHHHHHHHHHHHHHH DCVQLDMSQSDKLTHFSLIMSDCCAATRLSLPASVIVLDIVETAELSLASELPNLVHAKL HHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHEEEEEHHHHHHHHHHHHCHHHHHHHH SPCLPEVLKHSKQLEYLEVCHFSASSLPQWLQELPKLSHLSLLNPELTELGDMGGLSALT HHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHCCCCHHHHCCCCHHHHHCCCCCHHHHH ELSLKLHHYYFDQAYTFNAPKLTGLLNAPALNKLNVTLSKQTKEISSLKALISLPKRIEL HHHHHHHHEEECCEEECCCCCHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCEEE KLDVYNHIARSDELNKLQGILQNAELTAEQRGHYWLLLLGIDKPKKLPAEKLDARFHLTF EEHHHHHHHCCCHHHHHHHHHHCCHHHHHCCCCEEEEEEECCCCCCCCHHHHCCEEEEEE MEAKYSPLKSLAQAWLRSRAQVDAERSPLGTDSVLFICGKSGFKAAELKEKAAELGFSLS ECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCHHH KKLDSKVTHILLGSNPKQTAAIDVDQHLIIDDTVLSQWFSADAPKFLQQTSAVPMLDNVL HHHHHHEEEEEECCCCCCCEEEECCCEEEECHHHHHHHHCCCCHHHHHHHCCCCHHHHHH DMLRSPDETSHLVAVTMLEQGGITSEMQLPLFLILKTTDNKALRKQIQTLLAGLGDNLFQ HHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHH LAVQDRVTFDGKMRGLNKHGDPIGEGAVYKKLKGLNKRWGKALCDEFSLLYFNHFGEGLL HHHHHCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH WLLSQKEELALRQQAIGALVEGERLNWHKGCGFERMLTLGDDDRRVKCHLYPNIYLRSDV HHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEECCCCCEEEEEECCCEEECHHH LHNIKAPLPIKLPSKTRITELDLHNCLLGELPTSFVHYVDVTKLNLHFNHLSSLPATLAT HHHCCCCCCEECCCCCCEEEECHHHHHHHHCCHHHHHHEEEEEEEEEHHHHHHHHHHHHH LSKIEDLDLSYNHFDEFPAVLFKLTNLKRLDLRRARQPARGVFNCHYDENEDYLPIRAPQ HHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEECCCCCCEEEEECCH AFRDAFPECEILEDE HHHHCCCCCEEECCC >Mature Secondary Structure PCLTVKSLKTFNSDSAAIEFEYKSNNMNKQKTFRLEDKHLPLDNSVHAEVTDLFYDLNY CCCCHHHHHHCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHEECCC SHPDWAELAHKFPNLTRLDLNYYGRKEPNRIPDAQLFINFPKLKCLDAVAQPLVLTPEQA CCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCEEECCCCC PFLQHLEEVNNVLITDAISFAVLTGLPAIKSLDVRLGGSAVDLTAAGKSLQKIRMVLMVA HHHHHHHHHCCEEHHHHHHHHHHHCCCCHHEEEEEECCCEEEEHHHHHHHHHHHHHHHHH DCVQLDMSQSDKLTHFSLIMSDCCAATRLSLPASVIVLDIVETAELSLASELPNLVHAKL HHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHEEEEEHHHHHHHHHHHHCHHHHHHHH SPCLPEVLKHSKQLEYLEVCHFSASSLPQWLQELPKLSHLSLLNPELTELGDMGGLSALT HHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHCCCCHHHHCCCCHHHHHCCCCCHHHHH ELSLKLHHYYFDQAYTFNAPKLTGLLNAPALNKLNVTLSKQTKEISSLKALISLPKRIEL HHHHHHHHEEECCEEECCCCCHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCEEE KLDVYNHIARSDELNKLQGILQNAELTAEQRGHYWLLLLGIDKPKKLPAEKLDARFHLTF EEHHHHHHHCCCHHHHHHHHHHCCHHHHHCCCCEEEEEEECCCCCCCCHHHHCCEEEEEE MEAKYSPLKSLAQAWLRSRAQVDAERSPLGTDSVLFICGKSGFKAAELKEKAAELGFSLS ECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCHHH KKLDSKVTHILLGSNPKQTAAIDVDQHLIIDDTVLSQWFSADAPKFLQQTSAVPMLDNVL HHHHHHEEEEEECCCCCCCEEEECCCEEEECHHHHHHHHCCCCHHHHHHHCCCCHHHHHH DMLRSPDETSHLVAVTMLEQGGITSEMQLPLFLILKTTDNKALRKQIQTLLAGLGDNLFQ HHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHH LAVQDRVTFDGKMRGLNKHGDPIGEGAVYKKLKGLNKRWGKALCDEFSLLYFNHFGEGLL HHHHHCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH WLLSQKEELALRQQAIGALVEGERLNWHKGCGFERMLTLGDDDRRVKCHLYPNIYLRSDV HHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEECCCCCEEEEEECCCEEECHHH LHNIKAPLPIKLPSKTRITELDLHNCLLGELPTSFVHYVDVTKLNLHFNHLSSLPATLAT HHHCCCCCCEECCCCCCEEEECHHHHHHHHCCHHHHHHEEEEEEEEEHHHHHHHHHHHHH LSKIEDLDLSYNHFDEFPAVLFKLTNLKRLDLRRARQPARGVFNCHYDENEDYLPIRAPQ HHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEECCCCCCEEEEECCH AFRDAFPECEILEDE HHHHCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA