Click here to switch to the map view.

The map label for this gene is agmR [H]

Identifier: 157962375

GI number: 157962375

Start: 3107611

End: 3108270

Strand: Direct

Name: agmR [H]

Synonym: Spea_2554

Alternate gene names: 157962375

Gene position: 3107611-3108270 (Clockwise)

Preceding gene: 157962374

Following gene: 157962377

Centisome position: 60.06

GC content: 43.48

Gene sequence:

>660_bases
ATGAAGCCTGAAAATTTAAATATTATTATCGCCGACGACCATCCATTATTTCGAAATGCGCTTAGGCAAGCTTTATCGTC
TGAGTTTAAAAATACACAATGGTTTGAAGCAGATAGCGCCGATGCGCTACAAGTTCTACTCGAAAATAGCGACATTGAAT
ATGATGTAGTGTTATTAGATCTACAGATGCCTGGCTCCCATGGCTATTCGACGCTGATCCACCTAAGAACTCATTTTCAA
GACTTACCTGTAGTCGTTATCTCTGCCCATGAAGATAGCCTCACTATCAGTCGTGCCATCCACTATGGTAGCTCAGGCTT
CATTCCAAAGTCTTCTTCGATGGAAACCTTAGCCGAAGCTCTAGAAGCTGTGTTATTTGGCGACGTTTGGTTACCCCAAG
GTGTTGAACTCCAAGAGATCGATGAAGATGATACCAACCAGATGGCCAGCAAACTTGCCGATCTCACCCCACAGCAATAT
AAAGTCTTGCAAATGTTTGCCGAAGGCCTGCTCAATAAGCAGATCGCTTATGATCTAGGGGTGTCTGAAGCAACCATTAA
AGCTCACGCAACGGCAATATTTAGAAAGCTAGGAGTAAGAAACCGAACTCAAGCAGTGATTGCGTTGCAACAGCTAGAGA
TGGAAAAGGTCGATATCTAA

Upstream 100 bases:

>100_bases
ACAAATAGTCACTTTTCCAGGCTAAAGCCATAGAATCCCTTGTCATTTATCTGTTACATTGAATCATCTTCACGCGCAAC
CAAAACAACCTTATAAAGCC

Downstream 100 bases:

>100_bases
ATCATTCACTCTATCAAAAAGCACGACCAAAAAAATCCGCTATCGAAGCGGATTTTTTATAAGCTCAGTTTCCCAAACCT
GTATTAGCGGAAGTTTTCCA

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MKPENLNIIIADDHPLFRNALRQALSSEFKNTQWFEADSADALQVLLENSDIEYDVVLLDLQMPGSHGYSTLIHLRTHFQ
DLPVVVISAHEDSLTISRAIHYGSSGFIPKSSSMETLAEALEAVLFGDVWLPQGVELQEIDEDDTNQMASKLADLTPQQY
KVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVIALQQLEMEKVDI

Sequences:

>Translated_219_residues
MKPENLNIIIADDHPLFRNALRQALSSEFKNTQWFEADSADALQVLLENSDIEYDVVLLDLQMPGSHGYSTLIHLRTHFQ
DLPVVVISAHEDSLTISRAIHYGSSGFIPKSSSMETLAEALEAVLFGDVWLPQGVELQEIDEDDTNQMASKLADLTPQQY
KVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVIALQQLEMEKVDI
>Mature_219_residues
MKPENLNIIIADDHPLFRNALRQALSSEFKNTQWFEADSADALQVLLENSDIEYDVVLLDLQMPGSHGYSTLIHLRTHFQ
DLPVVVISAHEDSLTISRAIHYGSSGFIPKSSSMETLAEALEAVLFGDVWLPQGVELQEIDEDDTNQMASKLADLTPQQY
KVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVIALQQLEMEKVDI

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=204, Percent_Identity=32.3529411764706, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786747, Length=209, Percent_Identity=27.2727272727273, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788546, Length=206, Percent_Identity=28.1553398058252, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789937, Length=204, Percent_Identity=27.4509803921569, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787473, Length=217, Percent_Identity=28.110599078341, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788222, Length=200, Percent_Identity=23, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788712, Length=195, Percent_Identity=25.6410256410256, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1790102, Length=197, Percent_Identity=26.3959390862944, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24464; Mature: 24464

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPENLNIIIADDHPLFRNALRQALSSEFKNTQWFEADSADALQVLLENSDIEYDVVLLD
CCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEE
LQMPGSHGYSTLIHLRTHFQDLPVVVISAHEDSLTISRAIHYGSSGFIPKSSSMETLAEA
EECCCCCCHHHHHHHHHHCCCCCEEEEECCCCCEEHHHHHCCCCCCCCCCCCCHHHHHHH
LEAVLFGDVWLPQGVELQEIDEDDTNQMASKLADLTPQQYKVLQMFAEGLLNKQIAYDLG
HHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHCC
VSEATIKAHATAIFRKLGVRNRTQAVIALQQLEMEKVDI
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKPENLNIIIADDHPLFRNALRQALSSEFKNTQWFEADSADALQVLLENSDIEYDVVLLD
CCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEE
LQMPGSHGYSTLIHLRTHFQDLPVVVISAHEDSLTISRAIHYGSSGFIPKSSSMETLAEA
EECCCCCCHHHHHHHHHHCCCCCEEEEECCCCCEEHHHHHCCCCCCCCCCCCCHHHHHHH
LEAVLFGDVWLPQGVELQEIDEDDTNQMASKLADLTPQQYKVLQMFAEGLLNKQIAYDLG
HHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHCC
VSEATIKAHATAIFRKLGVRNRTQAVIALQQLEMEKVDI
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]