Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
---|---|
Accession | NC_009901 |
Length | 5,174,581 |
Click here to switch to the map view.
The map label for this gene is 157962336
Identifier: 157962336
GI number: 157962336
Start: 3064166
End: 3064855
Strand: Reverse
Name: 157962336
Synonym: Spea_2515
Alternate gene names: NA
Gene position: 3064855-3064166 (Counterclockwise)
Preceding gene: 157962337
Following gene: 157962332
Centisome position: 59.23
GC content: 44.93
Gene sequence:
>690_bases ATGGCAAATCAAACAGAGCAGGTCGTTAAATCAAATAAAGATGCAGAGGGTTCTAAAAAGCTCTGCAGAGACTTTAATCG GTATTTTCCATGGCTATTAGTTGCTACGGGGATAGCGTTAATTATTCAAGGTGGATATATGCAAGTGAAAGCACATTTTG CCCAGTTTCTTATTCAGCAGGCTTGGCAAAGAACACTCGAAGATCGCAAACCCCATAAACCTTGGTCATGGGCAGATACT CATCCCGTTGCCAAATTGGAGTTTTTGCCAAGCGCAGAGGTTCAAGACCATATTGAAAGCCAAAATACTCTAGATACACA TGATAGTGGCCAAGGTGATAGCCTTTACGTGCTATCAGGGGCATCGGGTCGAAATCTGGCCTTTGGGCCGGCACTGATGC TATCGAGTTCAGAATTTGATGAGCAAGGTAATACGGTTATCGCAGGTCATAGAGACACGCATTTTGCTCGATTAAATGGG GTTAAAGTGGGGCAGTTGATAAAGGTTCAAAGTGCTTCAGGTAAGCGCCGTCTGTATCGAGTGTTCGCAACCCTAGTGAC CCATGAGTCTGATATGAGTGTGACTCAAGACAGCCATGATAAGCTGTTAACCTTAGTGACCTGCTACCCATTTGGTGCAA GCTTTGCAGGTGGACCACTACGGTTTGTGGTTAAAGCTGAGCCAATTTAG
Upstream 100 bases:
>100_bases CAGTGTTATTGCTCTTAGCGATTCTTTACCGTCTGTCTTTTAGTCGACTGGGAATTAGTCGAGTGGGAATTAGTCTAGGT GCTTTCAGGGAACTAGAGTG
Downstream 100 bases:
>100_bases AGTACCGAGTTATTTTGATATAAAACAGCTCGGTACTTTTGTGAAAACAGTGAGGAGATAGCTAGGTAATGGTGTCATGG CCTAAAGGTTTGACTATGAC
Product: sortase family protein
Products: NA
Alternate protein names: Peptidase; Sortase-Like Protein; LPXTG-Site Transpeptidase Family Protein; Sortase; Sortase Family Protein Peptidase C; Transpeptidase Protein; Sortase Family; Sortase-Like
Number of amino acids: Translated: 229; Mature: 228
Protein sequence:
>229_residues MANQTEQVVKSNKDAEGSKKLCRDFNRYFPWLLVATGIALIIQGGYMQVKAHFAQFLIQQAWQRTLEDRKPHKPWSWADT HPVAKLEFLPSAEVQDHIESQNTLDTHDSGQGDSLYVLSGASGRNLAFGPALMLSSSEFDEQGNTVIAGHRDTHFARLNG VKVGQLIKVQSASGKRRLYRVFATLVTHESDMSVTQDSHDKLLTLVTCYPFGASFAGGPLRFVVKAEPI
Sequences:
>Translated_229_residues MANQTEQVVKSNKDAEGSKKLCRDFNRYFPWLLVATGIALIIQGGYMQVKAHFAQFLIQQAWQRTLEDRKPHKPWSWADT HPVAKLEFLPSAEVQDHIESQNTLDTHDSGQGDSLYVLSGASGRNLAFGPALMLSSSEFDEQGNTVIAGHRDTHFARLNG VKVGQLIKVQSASGKRRLYRVFATLVTHESDMSVTQDSHDKLLTLVTCYPFGASFAGGPLRFVVKAEPI >Mature_228_residues ANQTEQVVKSNKDAEGSKKLCRDFNRYFPWLLVATGIALIIQGGYMQVKAHFAQFLIQQAWQRTLEDRKPHKPWSWADTH PVAKLEFLPSAEVQDHIESQNTLDTHDSGQGDSLYVLSGASGRNLAFGPALMLSSSEFDEQGNTVIAGHRDTHFARLNGV KVGQLIKVQSASGKRRLYRVFATLVTHESDMSVTQDSHDKLLTLVTCYPFGASFAGGPLRFVVKAEPI
Specific function: Unknown
COG id: COG3764
COG function: function code M; Sortase (surface protein transpeptidase)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25430; Mature: 25299
Theoretical pI: Translated: 8.26; Mature: 8.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANQTEQVVKSNKDAEGSKKLCRDFNRYFPWLLVATGIALIIQGGYMQVKAHFAQFLIQQ CCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH AWQRTLEDRKPHKPWSWADTHPVAKLEFLPSAEVQDHIESQNTLDTHDSGQGDSLYVLSG HHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEC ASGRNLAFGPALMLSSSEFDEQGNTVIAGHRDTHFARLNGVKVGQLIKVQSASGKRRLYR CCCCCCCCCCHHEECCCCCCCCCCEEEECCCCCEEEEECCCEECCEEEEECCCCHHHHHH VFATLVTHESDMSVTQDSHDKLLTLVTCYPFGASFAGGPLRFVVKAEPI HHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCC >Mature Secondary Structure ANQTEQVVKSNKDAEGSKKLCRDFNRYFPWLLVATGIALIIQGGYMQVKAHFAQFLIQQ CCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH AWQRTLEDRKPHKPWSWADTHPVAKLEFLPSAEVQDHIESQNTLDTHDSGQGDSLYVLSG HHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEC ASGRNLAFGPALMLSSSEFDEQGNTVIAGHRDTHFARLNGVKVGQLIKVQSASGKRRLYR CCCCCCCCCCHHEECCCCCCCCCCEEEECCCCCEEEEECCCEECCEEEEECCCCHHHHHH VFATLVTHESDMSVTQDSHDKLLTLVTCYPFGASFAGGPLRFVVKAEPI HHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA