Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
---|---|
Accession | NC_009901 |
Length | 5,174,581 |
Click here to switch to the map view.
The map label for this gene is 157962300
Identifier: 157962300
GI number: 157962300
Start: 3023823
End: 3024743
Strand: Reverse
Name: 157962300
Synonym: Spea_2479
Alternate gene names: NA
Gene position: 3024743-3023823 (Counterclockwise)
Preceding gene: 157962301
Following gene: 157962299
Centisome position: 58.45
GC content: 40.17
Gene sequence:
>921_bases ATGTTTTTTGAAGGGTCGGAGAAGAAAATAGAGCTACACATGAGTCGTAGTGCTGTTTCATTACGATCTTTGCCTAAAGA CTTTTGGCAGCAAGCACTTGCAGAGGCCGGAGCCGAGATCTTATCGGTGCTTTCAAATCAACACTGTGATGCCTATGTGC TGAGTGAATCGAGTTTATTCGTCTGGGAACGTAAACTGCTATTAATCACATGTGGAAACACCCGCTTAGTCGATGCTGCC ACTTATATGATTACACAGCTTGGTACAAAGTTTATCTCAAGCTTAAGCTATCAACGTAAGAGTGAATTTTTGTCTTATCT CCAAGCAAGCCGCTTCGAGGATGATATAGAGCAACTTAAGGGCCACATACCGGGCATTGCATATCGAGTAGGGCATTTAG ATAACCACCACCATTACCTATTTTGTAGTCAACCGACCCAAGATAGGAATAGTGGTGCGAGTTTGTTGATGTATCACATC AAAGGTGAAGTAGCTGAGTATTTACGCAGCGATAAACAATCAAGCGAACAGATCCGCTGTTTATTGCAATTAGAGCGGTT ATTACCTCAGTTTCAGTTTGATGATTACCTATTTAAACCATGTGGTTATTCAGTCAATGGCATGTTTGAAGATAGGTTTA TAACCATACATATCACACCTCAAGAGCGAAGCTCTTACGTGAGTATTGAAACAAACTTGAATTTTTCGCAATATCCGTTC AATATTTTCTCCGAGTTGTTGAAAATATTGAGCCCCAGCAGTTGGGACATCATTGGGATGAATACGCAGATTAACAATCA AGACTTCCCTTCTCATCGAAGGCTAGCGAGTTGTAATCTACAGTTAAATCAACTTAATGAATTTAATTACAATCACTATA TTCAAGCGGACAGTGAAATCCTGTGTGCAGAAGTATTGTGA
Upstream 100 bases:
>100_bases AAGCTTGTATAGGAACTTTAATGGTGGTTTTGCGTTCAAACAACTTACGTTAGATGAGAGCTTTCATTAGCTGGCTGATA TTTGAAGGAATTACGATAAG
Downstream 100 bases:
>100_bases CTCTAGACACTTTATGGAGTATTTATGACCACTATTGCAGATAAGCCTGATTATTCGCTTTATTCAAATGCATTTGGTTA CTTAAGACAGCCGCTAGACT
Product: adenosylmethionine decarboxylase
Products: NA
Alternate protein names: S-Adenosylmethionine Decarboxylase; S-Adenosylmethionine Decarboxylase Pro
Number of amino acids: Translated: 306; Mature: 306
Protein sequence:
>306_residues MFFEGSEKKIELHMSRSAVSLRSLPKDFWQQALAEAGAEILSVLSNQHCDAYVLSESSLFVWERKLLLITCGNTRLVDAA TYMITQLGTKFISSLSYQRKSEFLSYLQASRFEDDIEQLKGHIPGIAYRVGHLDNHHHYLFCSQPTQDRNSGASLLMYHI KGEVAEYLRSDKQSSEQIRCLLQLERLLPQFQFDDYLFKPCGYSVNGMFEDRFITIHITPQERSSYVSIETNLNFSQYPF NIFSELLKILSPSSWDIIGMNTQINNQDFPSHRRLASCNLQLNQLNEFNYNHYIQADSEILCAEVL
Sequences:
>Translated_306_residues MFFEGSEKKIELHMSRSAVSLRSLPKDFWQQALAEAGAEILSVLSNQHCDAYVLSESSLFVWERKLLLITCGNTRLVDAA TYMITQLGTKFISSLSYQRKSEFLSYLQASRFEDDIEQLKGHIPGIAYRVGHLDNHHHYLFCSQPTQDRNSGASLLMYHI KGEVAEYLRSDKQSSEQIRCLLQLERLLPQFQFDDYLFKPCGYSVNGMFEDRFITIHITPQERSSYVSIETNLNFSQYPF NIFSELLKILSPSSWDIIGMNTQINNQDFPSHRRLASCNLQLNQLNEFNYNHYIQADSEILCAEVL >Mature_306_residues MFFEGSEKKIELHMSRSAVSLRSLPKDFWQQALAEAGAEILSVLSNQHCDAYVLSESSLFVWERKLLLITCGNTRLVDAA TYMITQLGTKFISSLSYQRKSEFLSYLQASRFEDDIEQLKGHIPGIAYRVGHLDNHHHYLFCSQPTQDRNSGASLLMYHI KGEVAEYLRSDKQSSEQIRCLLQLERLLPQFQFDDYLFKPCGYSVNGMFEDRFITIHITPQERSSYVSIETNLNFSQYPF NIFSELLKILSPSSWDIIGMNTQINNQDFPSHRRLASCNLQLNQLNEFNYNHYIQADSEILCAEVL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI74275346, Length=280, Percent_Identity=32.1428571428571, Blast_Score=117, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17508719, Length=341, Percent_Identity=29.6187683284457, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI24583360, Length=265, Percent_Identity=29.4339622641509, Blast_Score=110, Evalue=1e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35384; Mature: 35384
Theoretical pI: Translated: 5.95; Mature: 5.95
Prosite motif: PS01336 ADOMETDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFFEGSEKKIELHMSRSAVSLRSLPKDFWQQALAEAGAEILSVLSNQHCDAYVLSESSLF CCCCCCCCEEEEEECHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEE VWERKLLLITCGNTRLVDAATYMITQLGTKFISSLSYQRKSEFLSYLQASRFEDDIEQLK EEEEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH GHIPGIAYRVGHLDNHHHYLFCSQPTQDRNSGASLLMYHIKGEVAEYLRSDKQSSEQIRC CCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCHHHHHHH LLQLERLLPQFQFDDYLFKPCGYSVNGMFEDRFITIHITPQERSSYVSIETNLNFSQYPF HHHHHHHCCCCCCCCEEECCCCCCCCCEEECEEEEEEEECCCCCCEEEEEECCCCCCCCH NIFSELLKILSPSSWDIIGMNTQINNQDFPSHRRLASCNLQLNQLNEFNYNHYIQADSEI HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHEECCEEEEHHCCCCCCEEEECCCCE LCAEVL EEEECC >Mature Secondary Structure MFFEGSEKKIELHMSRSAVSLRSLPKDFWQQALAEAGAEILSVLSNQHCDAYVLSESSLF CCCCCCCCEEEEEECHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEE VWERKLLLITCGNTRLVDAATYMITQLGTKFISSLSYQRKSEFLSYLQASRFEDDIEQLK EEEEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH GHIPGIAYRVGHLDNHHHYLFCSQPTQDRNSGASLLMYHIKGEVAEYLRSDKQSSEQIRC CCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCHHHHHHH LLQLERLLPQFQFDDYLFKPCGYSVNGMFEDRFITIHITPQERSSYVSIETNLNFSQYPF HHHHHHHCCCCCCCCEEECCCCCCCCCEEECEEEEEEEECCCCCCEEEEEECCCCCCCCH NIFSELLKILSPSSWDIIGMNTQINNQDFPSHRRLASCNLQLNQLNEFNYNHYIQADSEI HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHEECCEEEEHHCCCCCCEEEECCCCE LCAEVL EEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA