Click here to switch to the map view.

The map label for this gene is cmoA [H]

Identifier: 157962189

GI number: 157962189

Start: 2888514

End: 2889245

Strand: Direct

Name: cmoA [H]

Synonym: Spea_2368

Alternate gene names: 157962189

Gene position: 2888514-2889245 (Clockwise)

Preceding gene: 157962181

Following gene: 157962190

Centisome position: 55.82

GC content: 40.85

Gene sequence:

>732_bases
ATGAACTCTTCACAAGACAATCTCTTTGCCAAGCCGTACGAACATGTCAGCGATTTTCAATTCGATGACAAAGTAGCAGG
TGTATTTAACGATATGATCAGACGCTCTGTTCCTGGTTATGGTCAAATCATCAATACCATAGGTGATTTAGCACAAAAAT
ATGCTACCCCTAACAGTAAAATTTATGATTTGGGTTGCTCATTAGGCGCCGCCACATTGAGTATTCGCCGCCGTGTCGAA
GGCCGTAACTGCCAAATCATCGCTATAGATAACAGCGAGTCTATGATTGAGCGCTGTAATGAAAACTTATCGGCTTATGT
TAGTGAAACGCCTGTAGAGCTAGTCTGTGGTGATATTCGCGATATCAAAATAGAGAATGCCTCTCTAGTCGTACTTAACT
TTACGATGCAATTTCTCGCTCCTAGCGATCGTGAAAGTCTGCTTAAAAATATTTACCAAGGTCTTGTGCCTGGTGGTTTA
CTCGTACTGTCTGAAAAGCTCTACTTTAAAGAAGATAATATCCAGACAACATTGGATGATTTACACCTCGATTTCAAAAG
AGCAAATGGTTACAGTGAGTTAGAGATCAGTCAAAAACGCAGTTCGTTAGAGAATGTAATGAAGCCTGATACGCTCGTCG
AGCACGAAAATAGGATCAGAGCACAAGGGTTTAGCCAGTTCAGCGTTTGGTTCCAATGTTTTAATTTTGCATCAATGGTG
GCAATTAAGTGA

Upstream 100 bases:

>100_bases
GCTATTAGACAAAATTTTATGAGGAAATTCCAGTGCTAGTCTTGCCGCTTATAGACATGTTTAGCTAGAATGAGGTGTTG
AACTCCCACAATTTGATCAC

Downstream 100 bases:

>100_bases
TTAGCTTTAGCTCGTTTTACAAACAAATTTCAGACTCCAGCCTACAACACTGGTTAGAGACGCTTCCATCCATTCTTGGT
CAGTGGCAACGTGATCACAA

Product: putative methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MNSSQDNLFAKPYEHVSDFQFDDKVAGVFNDMIRRSVPGYGQIINTIGDLAQKYATPNSKIYDLGCSLGAATLSIRRRVE
GRNCQIIAIDNSESMIERCNENLSAYVSETPVELVCGDIRDIKIENASLVVLNFTMQFLAPSDRESLLKNIYQGLVPGGL
LVLSEKLYFKEDNIQTTLDDLHLDFKRANGYSELEISQKRSSLENVMKPDTLVEHENRIRAQGFSQFSVWFQCFNFASMV
AIK

Sequences:

>Translated_243_residues
MNSSQDNLFAKPYEHVSDFQFDDKVAGVFNDMIRRSVPGYGQIINTIGDLAQKYATPNSKIYDLGCSLGAATLSIRRRVE
GRNCQIIAIDNSESMIERCNENLSAYVSETPVELVCGDIRDIKIENASLVVLNFTMQFLAPSDRESLLKNIYQGLVPGGL
LVLSEKLYFKEDNIQTTLDDLHLDFKRANGYSELEISQKRSSLENVMKPDTLVEHENRIRAQGFSQFSVWFQCFNFASMV
AIK
>Mature_243_residues
MNSSQDNLFAKPYEHVSDFQFDDKVAGVFNDMIRRSVPGYGQIINTIGDLAQKYATPNSKIYDLGCSLGAATLSIRRRVE
GRNCQIIAIDNSESMIERCNENLSAYVSETPVELVCGDIRDIKIENASLVVLNFTMQFLAPSDRESLLKNIYQGLVPGGL
LVLSEKLYFKEDNIQTTLDDLHLDFKRANGYSELEISQKRSSLENVMKPDTLVEHENRIRAQGFSQFSVWFQCFNFASMV
AIK

Specific function: Catalyzes the conversion of 5-methoxyuridine (mo5U) to uridine-5-oxyacetic acid (cmo5U) at position 34 in tRNA. May also participate in the methylation of uridine-5-oxyacetic acid (cmo5U) to uridine-5-oxyacetic acid methyl ester (mcmo5U) [H]

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. CmoA family [H]

Homologues:

Organism=Escherichia coli, GI1788177, Length=241, Percent_Identity=59.3360995850622, Blast_Score=307, Evalue=3e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013216
- InterPro:   IPR005271 [H]

Pfam domain/function: PF08241 Methyltransf_11 [H]

EC number: NA

Molecular weight: Translated: 27457; Mature: 27457

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSSQDNLFAKPYEHVSDFQFDDKVAGVFNDMIRRSVPGYGQIINTIGDLAQKYATPNSK
CCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCE
IYDLGCSLGAATLSIRRRVEGRNCQIIAIDNSESMIERCNENLSAYVSETPVELVCGDIR
EEECCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHCCCCC
DIKIENASLVVLNFTMQFLAPSDRESLLKNIYQGLVPGGLLVLSEKLYFKEDNIQTTLDD
EEEECCCCEEEEEEHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEHHHHEECCCCHHHHHH
LHLDFKRANGYSELEISQKRSSLENVMKPDTLVEHENRIRAQGFSQFSVWFQCFNFASMV
HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
AIK
CCC
>Mature Secondary Structure
MNSSQDNLFAKPYEHVSDFQFDDKVAGVFNDMIRRSVPGYGQIINTIGDLAQKYATPNSK
CCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCE
IYDLGCSLGAATLSIRRRVEGRNCQIIAIDNSESMIERCNENLSAYVSETPVELVCGDIR
EEECCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHCCCCC
DIKIENASLVVLNFTMQFLAPSDRESLLKNIYQGLVPGGLLVLSEKLYFKEDNIQTTLDD
EEEECCCCEEEEEEHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEHHHHEECCCCHHHHHH
LHLDFKRANGYSELEISQKRSSLENVMKPDTLVEHENRIRAQGFSQFSVWFQCFNFASMV
HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
AIK
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA