Click here to switch to the map view.

The map label for this gene is ydiK [C]

Identifier: 157962115

GI number: 157962115

Start: 2781639

End: 2782721

Strand: Direct

Name: ydiK [C]

Synonym: Spea_2294

Alternate gene names: 157962115

Gene position: 2781639-2782721 (Clockwise)

Preceding gene: 157962114

Following gene: 157962116

Centisome position: 53.76

GC content: 44.41

Gene sequence:

>1083_bases
ATGAGTAGCCTTAAACTCAAACCGCACCACTTAGTCTTACTATTCGCCTTAGCGATAGCTTTCTATGCCTGTTATTTACT
CATCTCCCCTTATTTAGGCTCGATAGTACTGGGGTTTATCGTCTCTATATTATTTCTCCCGCTCCATACTCGAATTCAAC
AGCGCATGCCTAACAGCCCTAATATGGCCTCAGTATTTTCGTGTACATTAGTGACGGTGATGGTGTTGATCCCATTACTG
TTTGTGGCGATGGCGATTATGAATGAAGGCATCAACTTTATGACTAATGCCTACGGTTGGCTTACTGACGGCGGAGCAAA
AAGCTTTCTTGCTCACCCTTATATTCAAAGTGGCGTCGCCTTACTCAATAAGTGGCTGCCATTTGACACAATTAAGATAG
ATGAGCTGGTACAACAAGCAGCAGGAAAAGTAACCCAGCTGAGTAGCAGCTTATTAACTGCCAGTACGGGCATTGCAGGT
GATGTAGCTGATACCGTTTTAGATTTTGGACTGATGCTATTTGTGTTGTTTTTCTTTTTGCGTGATCAACAGAAAATCAT
CGATAACACTCGCCATATCATTCCATTATCTCGCTCGCAGCAAGGGCTTATCTTCAATGAAATCGGCGTTGTTGCCAAGT
CTGCTGTGTTAGGTGCATTTCTTACTGCATTAGCCCAGGGTGCACTTGGCGGAATAGCCATGTCGTTAGCCGGATTTTCG
GGGTTGTTTTGGGGCAGTATGATGGCGTTTGCGTCTTTTATCCCCTTTGTTGGCACCGCAATGATCTGGCTACCAGCCTC
GATTTATTTGTTCATCACCGGTGACTGGCAATGGGCGCTATTTTTGATTGTGTGGGGTGTGGTGGTTATTGGCTCGATTG
ATAACTTTCTTAGACCTTGGCTTATGCAAGGCAATACCGGCATGAGCACGCTACTGCTGTTTTTCTCGCTACTGGGTGGT
TTACAGTTGTTTGGCCTAATCGGCTTGATCTATGGGCCGATCATATTTGCCGTTACCTTGGTGTTAGCTCGGCTATATGA
AATTGAGTTTAAAGACTTTATTGAGCAACAAGATAAAGAGTAA

Upstream 100 bases:

>100_bases
CGAAGCCACTGTTAGCGTTGACTAAATACAGCTGTAGCCCATAATCACAAGTAAAATGCACTGCAATGCCTTATCTTGCT
TATATTTTGGAGCTTTTTTA

Downstream 100 bases:

>100_bases
TTACCGAGTTAACTCCTACGCTTCCGCTATCAAAACAGGCCGCTTAACGTTAAGCGGCCTGTTTTATGACCATTCAAGTT
TTCACTTCTAAACTTTCATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MSSLKLKPHHLVLLFALAIAFYACYLLISPYLGSIVLGFIVSILFLPLHTRIQQRMPNSPNMASVFSCTLVTVMVLIPLL
FVAMAIMNEGINFMTNAYGWLTDGGAKSFLAHPYIQSGVALLNKWLPFDTIKIDELVQQAAGKVTQLSSSLLTASTGIAG
DVADTVLDFGLMLFVLFFFLRDQQKIIDNTRHIIPLSRSQQGLIFNEIGVVAKSAVLGAFLTALAQGALGGIAMSLAGFS
GLFWGSMMAFASFIPFVGTAMIWLPASIYLFITGDWQWALFLIVWGVVVIGSIDNFLRPWLMQGNTGMSTLLLFFSLLGG
LQLFGLIGLIYGPIIFAVTLVLARLYEIEFKDFIEQQDKE

Sequences:

>Translated_360_residues
MSSLKLKPHHLVLLFALAIAFYACYLLISPYLGSIVLGFIVSILFLPLHTRIQQRMPNSPNMASVFSCTLVTVMVLIPLL
FVAMAIMNEGINFMTNAYGWLTDGGAKSFLAHPYIQSGVALLNKWLPFDTIKIDELVQQAAGKVTQLSSSLLTASTGIAG
DVADTVLDFGLMLFVLFFFLRDQQKIIDNTRHIIPLSRSQQGLIFNEIGVVAKSAVLGAFLTALAQGALGGIAMSLAGFS
GLFWGSMMAFASFIPFVGTAMIWLPASIYLFITGDWQWALFLIVWGVVVIGSIDNFLRPWLMQGNTGMSTLLLFFSLLGG
LQLFGLIGLIYGPIIFAVTLVLARLYEIEFKDFIEQQDKE
>Mature_359_residues
SSLKLKPHHLVLLFALAIAFYACYLLISPYLGSIVLGFIVSILFLPLHTRIQQRMPNSPNMASVFSCTLVTVMVLIPLLF
VAMAIMNEGINFMTNAYGWLTDGGAKSFLAHPYIQSGVALLNKWLPFDTIKIDELVQQAAGKVTQLSSSLLTASTGIAGD
VADTVLDFGLMLFVLFFFLRDQQKIIDNTRHIIPLSRSQQGLIFNEIGVVAKSAVLGAFLTALAQGALGGIAMSLAGFSG
LFWGSMMAFASFIPFVGTAMIWLPASIYLFITGDWQWALFLIVWGVVVIGSIDNFLRPWLMQGNTGMSTLLLFFSLLGGL
QLFGLIGLIYGPIIFAVTLVLARLYEIEFKDFIEQQDKE

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1787979, Length=354, Percent_Identity=27.1186440677966, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 39503; Mature: 39371

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLKLKPHHLVLLFALAIAFYACYLLISPYLGSIVLGFIVSILFLPLHTRIQQRMPNSP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NMASVFSCTLVTVMVLIPLLFVAMAIMNEGINFMTNAYGWLTDGGAKSFLAHPYIQSGVA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
LLNKWLPFDTIKIDELVQQAAGKVTQLSSSLLTASTGIAGDVADTVLDFGLMLFVLFFFL
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
RDQQKIIDNTRHIIPLSRSQQGLIFNEIGVVAKSAVLGAFLTALAQGALGGIAMSLAGFS
HHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLFWGSMMAFASFIPFVGTAMIWLPASIYLFITGDWQWALFLIVWGVVVIGSIDNFLRPW
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
LMQGNTGMSTLLLFFSLLGGLQLFGLIGLIYGPIIFAVTLVLARLYEIEFKDFIEQQDKE
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSLKLKPHHLVLLFALAIAFYACYLLISPYLGSIVLGFIVSILFLPLHTRIQQRMPNSP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NMASVFSCTLVTVMVLIPLLFVAMAIMNEGINFMTNAYGWLTDGGAKSFLAHPYIQSGVA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
LLNKWLPFDTIKIDELVQQAAGKVTQLSSSLLTASTGIAGDVADTVLDFGLMLFVLFFFL
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
RDQQKIIDNTRHIIPLSRSQQGLIFNEIGVVAKSAVLGAFLTALAQGALGGIAMSLAGFS
HHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLFWGSMMAFASFIPFVGTAMIWLPASIYLFITGDWQWALFLIVWGVVVIGSIDNFLRPW
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
LMQGNTGMSTLLLFFSLLGGLQLFGLIGLIYGPIIFAVTLVLARLYEIEFKDFIEQQDKE
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]