| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is trxB [H]
Identifier: 157962079
GI number: 157962079
Start: 2737834
End: 2738784
Strand: Direct
Name: trxB [H]
Synonym: Spea_2258
Alternate gene names: 157962079
Gene position: 2737834-2738784 (Clockwise)
Preceding gene: 157962075
Following gene: 157962085
Centisome position: 52.91
GC content: 46.37
Gene sequence:
>951_bases ATGACCCAAGCTAGACATTGTGACTTACTTATTCTGGGTTCTGGCCCAGCAGGCTATACGGCCGCAGTTTATGCCGCTCG CGCAAATTTAAAGCCTGTATTGATCACTGGTATTCAACAAGGTGGACAATTAACCACCACGACTGAAGTAGAAAACTGGC CAGGAGATGCTGAAGACTTAACAGGTCCAGCATTGATGGAGCGTATGCAGAAGCACGCTGAAAAGTTTGAAACTGAGATT ATTTTCGATCACATCAACGAAGTGAACCTAAATGTTCGCCCTTTCCAACTGAAAGGCGACAACGGTGAATTCACTTGTGA CTCACTCATCATCTCGACTGGTGCATCAGCCATCTACCTTGGCCTAGAGTCTGAAGAAGCGTTTAAAGGCCGCGGCGTAT CAGCCTGTGCGACCTGTGACGGTTTCTTCTATCGTAACCAGAAAGTTGCCGTGATCGGTGGCGGTAACACTGCCGTTGAA GAAGCACTTTACTTAAGCAACATCGCGTCTGAGGTTCATCTTATTCACCGTCGTGATAGCTTCCGCAGTGAGAAGATCTT AACTAAGCGCCTGATGGACAAAGTAGCCAATGGCAACATCATCCTTCACCTTGATAACACACTCGATGAAGTAGTTGGCG ATCAAATGGGTGTAACGGGTCTTAAGATGAAGAGCACTAAAGACGGTAGCATTAAGGATCTTGAAGTTGCTGGCGTATTC GTTGCTATTGGCCATAAGCCAAACACATCTATGTTTGAAGGCCAGTTAGAAATGAACAATGGCTATATCAAAGTGCAAAG TGGCCTTGATGGTAACGCGACTCAAACTAGCATCGAAGGTGTGTTTGCAGCAGGTGATGTGATGGATCAACATTACCGCC AAGCAATTACATCAGCAGGTACTGGCTGTATGGCGGCATTAGACGCAGAACGTTACCTAGACGCAAAATAG
Upstream 100 bases:
>100_bases TACCCCTTACCTGAAATTCCATACAATCGCTGCAATTCGTAAAACAAGAGGGATACTATTCCCCTTGCAGTACCGTATTC GTTAAAGAACGGAGAGACTA
Downstream 100 bases:
>100_bases GAATAACTAAATAAGAGCGCTTAAATAAGCACTCTATTGTTAAACTAAAAAGCCAACACTCAGTGTTGGCTTTTTATTTT CTACTATTTTATTTTTAGTT
Product: thioredoxin reductase
Products: NA
Alternate protein names: TRXR [H]
Number of amino acids: Translated: 316; Mature: 315
Protein sequence:
>316_residues MTQARHCDLLILGSGPAGYTAAVYAARANLKPVLITGIQQGGQLTTTTEVENWPGDAEDLTGPALMERMQKHAEKFETEI IFDHINEVNLNVRPFQLKGDNGEFTCDSLIISTGASAIYLGLESEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVE EALYLSNIASEVHLIHRRDSFRSEKILTKRLMDKVANGNIILHLDNTLDEVVGDQMGVTGLKMKSTKDGSIKDLEVAGVF VAIGHKPNTSMFEGQLEMNNGYIKVQSGLDGNATQTSIEGVFAAGDVMDQHYRQAITSAGTGCMAALDAERYLDAK
Sequences:
>Translated_316_residues MTQARHCDLLILGSGPAGYTAAVYAARANLKPVLITGIQQGGQLTTTTEVENWPGDAEDLTGPALMERMQKHAEKFETEI IFDHINEVNLNVRPFQLKGDNGEFTCDSLIISTGASAIYLGLESEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVE EALYLSNIASEVHLIHRRDSFRSEKILTKRLMDKVANGNIILHLDNTLDEVVGDQMGVTGLKMKSTKDGSIKDLEVAGVF VAIGHKPNTSMFEGQLEMNNGYIKVQSGLDGNATQTSIEGVFAAGDVMDQHYRQAITSAGTGCMAALDAERYLDAK >Mature_315_residues TQARHCDLLILGSGPAGYTAAVYAARANLKPVLITGIQQGGQLTTTTEVENWPGDAEDLTGPALMERMQKHAEKFETEII FDHINEVNLNVRPFQLKGDNGEFTCDSLIISTGASAIYLGLESEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEE ALYLSNIASEVHLIHRRDSFRSEKILTKRLMDKVANGNIILHLDNTLDEVVGDQMGVTGLKMKSTKDGSIKDLEVAGVFV AIGHKPNTSMFEGQLEMNNGYIKVQSGLDGNATQTSIEGVFAAGDVMDQHYRQAITSAGTGCMAALDAERYLDAK
Specific function: Unknown
COG id: COG0492
COG function: function code O; Thioredoxin reductase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787114, Length=315, Percent_Identity=80.9523809523809, Blast_Score=533, Evalue=1e-153, Organism=Escherichia coli, GI87081763, Length=315, Percent_Identity=33.3333333333333, Blast_Score=141, Evalue=5e-35, Organism=Saccharomyces cerevisiae, GI6321898, Length=328, Percent_Identity=46.6463414634146, Blast_Score=282, Evalue=4e-77, Organism=Saccharomyces cerevisiae, GI6320560, Length=320, Percent_Identity=46.25, Blast_Score=271, Evalue=1e-73,
Paralogues:
None
Copy number: 808 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013027 - InterPro: IPR008255 - InterPro: IPR001327 - InterPro: IPR000103 - InterPro: IPR005982 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]
EC number: =1.8.1.9 [H]
Molecular weight: Translated: 34085; Mature: 33954
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: PS00573 PYRIDINE_REDOX_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQARHCDLLILGSGPAGYTAAVYAARANLKPVLITGIQQGGQLTTTTEVENWPGDAEDL CCCCCCCCEEEECCCCCCCCEEEEEHHCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHC TGPALMERMQKHAEKFETEIIFDHINEVNLNVRPFQLKGDNGEFTCDSLIISTGASAIYL CCHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEEEECCCCCEEEHEEEEECCCCEEEE GLESEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDS EECCCHHHCCCCCEEEEECCCEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHEEHHCCC FRSEKILTKRLMDKVANGNIILHLDNTLDEVVGDQMGVTGLKMKSTKDGSIKDLEVAGVF HHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEEEE VAIGHKPNTSMFEGQLEMNNGYIKVQSGLDGNATQTSIEGVFAAGDVMDQHYRQAITSAG EEECCCCCCCEEEEEEEECCCEEEEECCCCCCCCHHHHCEEEEHHHHHHHHHHHHHHHCC TGCMAALDAERYLDAK CCCEEEECHHHHCCCC >Mature Secondary Structure TQARHCDLLILGSGPAGYTAAVYAARANLKPVLITGIQQGGQLTTTTEVENWPGDAEDL CCCCCCCEEEECCCCCCCCEEEEEHHCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHC TGPALMERMQKHAEKFETEIIFDHINEVNLNVRPFQLKGDNGEFTCDSLIISTGASAIYL CCHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEEEECCCCCEEEHEEEEECCCCEEEE GLESEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDS EECCCHHHCCCCCEEEEECCCEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHEEHHCCC FRSEKILTKRLMDKVANGNIILHLDNTLDEVVGDQMGVTGLKMKSTKDGSIKDLEVAGVF HHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEEEE VAIGHKPNTSMFEGQLEMNNGYIKVQSGLDGNATQTSIEGVFAAGDVMDQHYRQAITSAG EEECCCCCCCEEEEEEEECCCEEEEECCCCCCCCHHHHCEEEEHHHHHHHHHHHHHHHCC TGCMAALDAERYLDAK CCCEEEECHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]